Wall clock time and date at job start Tue Mar 31 2020 15:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46778 * 2 1 4 4 H 1.08989 * 109.47508 * 305.00130 * 3 2 1 5 5 C 1.53001 * 109.47027 * 184.99904 * 3 2 1 6 6 O 1.42902 * 109.46898 * 65.00383 * 3 2 1 7 7 C 1.42900 * 113.99815 * 209.99646 * 6 3 2 8 8 C 1.50701 * 109.47028 * 179.97438 * 7 6 3 9 9 O 1.21278 * 120.00021 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99914 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00031 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47211 * 180.02562 * 11 10 8 13 13 H 1.09009 * 110.36731 * 57.81957 * 12 11 10 14 14 C 1.54554 * 110.32347 * 180.02562 * 12 11 10 15 15 C 1.54764 * 104.07718 * 142.49191 * 14 12 11 16 16 C 1.53351 * 103.67363 * 359.13808 * 15 14 12 17 17 C 1.52309 * 116.12516 * 108.91406 * 16 15 14 18 18 N 1.47283 * 87.68829 * 91.18323 * 17 16 15 19 19 C 1.36939 * 135.92487 * 206.12362 * 18 17 16 20 20 H 1.07996 * 119.99885 * 7.80043 * 19 18 17 21 21 C 1.38809 * 119.99898 * 187.79262 * 19 18 17 22 22 N 1.31617 * 120.00402 * 195.40118 * 21 19 18 23 23 Si 1.86800 * 119.99807 * 15.40559 * 21 19 18 24 24 H 1.48503 * 109.47067 * 269.99657 * 23 21 19 25 25 H 1.48498 * 109.47303 * 29.99611 * 23 21 19 26 26 H 1.48501 * 109.47329 * 149.99776 * 23 21 19 27 27 C 1.47285 * 88.14337 * 26.37639 * 18 17 16 28 28 O 1.43097 * 106.44379 * 337.45019 * 16 15 14 29 29 H 1.09000 * 109.47353 * 299.99601 * 1 2 3 30 30 H 1.08998 * 109.47271 * 60.00124 * 1 2 3 31 31 H 1.09005 * 109.46839 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47353 * 240.00399 * 2 1 3 33 33 H 1.08998 * 109.47008 * 120.00358 * 2 1 3 34 34 H 1.09002 * 109.47092 * 59.99971 * 5 3 2 35 35 H 1.08993 * 109.47445 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47021 * 300.00399 * 5 3 2 37 37 H 1.09001 * 109.46916 * 60.00374 * 7 6 3 38 38 H 1.09000 * 109.47142 * 299.99741 * 7 6 3 39 39 H 0.96998 * 119.99765 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.47025 * 59.99950 * 11 10 8 41 41 H 1.09000 * 109.47025 * 300.00213 * 11 10 8 42 42 H 1.09002 * 110.51015 * 23.84044 * 14 12 11 43 43 H 1.09004 * 110.62508 * 261.19607 * 14 12 11 44 44 H 1.08997 * 110.58448 * 240.58760 * 15 14 12 45 45 H 1.09000 * 110.71220 * 117.74392 * 15 14 12 46 46 H 1.09002 * 113.51861 * 336.47282 * 17 16 15 47 47 H 1.09007 * 113.57613 * 205.89569 * 17 16 15 48 48 H 0.97002 * 119.99818 * 354.91741 * 22 21 19 49 49 H 1.08997 * 113.51348 * 88.32384 * 27 18 17 50 50 H 1.09000 * 113.51515 * 218.91328 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1257 6 8 1.6619 2.0814 1.2211 7 6 1.4558 3.4903 1.1004 8 6 1.0626 4.0570 2.4403 9 8 0.9685 3.3264 3.4037 10 7 0.8164 5.3759 2.5681 11 6 0.4346 5.9270 3.8707 12 6 0.2139 7.4354 3.7415 13 1 -0.5516 7.6442 2.9940 14 6 -0.1896 8.0378 5.1064 15 6 0.5248 9.4103 5.1381 16 6 1.2835 9.4549 3.8062 17 6 0.7462 10.4232 2.7604 18 7 1.6613 11.4357 3.3143 19 6 1.6936 12.8032 3.3772 20 1 0.8384 13.3789 3.0552 21 6 2.8253 13.4495 3.8549 22 7 2.7619 14.7175 4.2020 23 14 4.4385 12.5197 4.0049 24 1 4.5286 11.8987 5.3509 25 1 4.4976 11.4602 2.9661 26 1 5.5717 13.4608 3.8171 27 6 2.5296 10.3348 3.7654 28 8 1.4519 8.0962 3.3902 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8532 0.9571 -1.0571 35 1 3.9281 2.4720 -0.1252 36 1 3.9994 0.9054 0.7161 37 1 0.6617 3.6807 0.3785 38 1 2.3768 3.9644 0.7611 39 1 0.8920 5.9603 1.7976 40 1 1.2286 5.7361 4.5927 41 1 -0.4865 5.4531 4.2098 42 1 0.1617 7.4054 5.9218 43 1 -1.2703 8.1683 5.1641 44 1 1.2193 9.4616 5.9767 45 1 -0.2011 10.2216 5.1930 46 1 -0.3072 10.6686 2.8954 47 1 0.9846 10.1353 1.7365 48 1 1.9454 15.2202 4.0554 49 1 3.2586 10.0218 3.0180 50 1 2.9755 10.5061 4.7452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755054019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:16 Heat of formation + Delta-G solvation = -99.349616 kcal Electronic energy + Delta-G solvation = -28057.069934 eV Core-core repulsion = 24085.337171 eV Total energy + Delta-G solvation = -3971.732762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70462 -40.78875 -39.20042 -38.34721 -35.71964 -34.71762 -34.47552 -33.16377 -31.28486 -30.74246 -29.44499 -27.99772 -27.16031 -24.95827 -24.42512 -23.29802 -22.31136 -21.95968 -21.48917 -20.73075 -19.47798 -18.35039 -18.14274 -17.60212 -17.35979 -17.10643 -16.60586 -16.29002 -16.26533 -15.66759 -15.48422 -15.33281 -15.05276 -14.76085 -14.64513 -14.41962 -14.27465 -14.03931 -13.70084 -13.55096 -13.35744 -13.19195 -12.94331 -12.72030 -12.67349 -12.56093 -12.42999 -12.25335 -12.23625 -12.14541 -11.90823 -11.66832 -11.46665 -11.45910 -11.30177 -10.87775 -10.85160 -10.58725 -10.50876 -10.13887 -9.28852 -8.64085 -5.49492 1.39107 1.49142 1.56362 1.63941 1.82103 2.50453 2.57334 2.99983 3.06366 3.17199 3.39663 3.59501 3.68170 3.74547 3.93217 3.97016 4.07079 4.11389 4.20388 4.22371 4.30598 4.37793 4.43952 4.45279 4.49457 4.58960 4.62729 4.67884 4.70045 4.73454 4.81230 4.83207 4.84465 4.95584 5.01270 5.06815 5.11509 5.11921 5.14705 5.22363 5.23059 5.29890 5.37172 5.44400 5.92445 5.96824 6.17513 6.53640 6.66704 7.20460 7.29684 8.22926 8.87555 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.002216 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.419281 B =12631.390021 C =13383.029989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.082 0.918 5 C -0.176 4.176 6 O -0.387 6.387 7 C 0.045 3.955 8 C 0.510 3.490 9 O -0.575 6.575 10 N -0.713 5.713 11 C 0.134 3.866 12 C 0.065 3.935 13 H 0.096 0.904 14 C -0.136 4.136 15 C -0.117 4.117 16 C 0.084 3.916 17 C 0.106 3.894 18 N -0.644 5.644 19 C -0.288 4.288 20 H 0.055 0.945 21 C -0.079 4.079 22 N -0.965 5.965 23 Si 1.096 2.904 24 H -0.278 1.278 25 H -0.258 1.258 26 H -0.300 1.300 27 C 0.105 3.895 28 O -0.361 6.361 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.417 0.583 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.249 0.751 49 H 0.056 0.944 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -29.023 -9.559 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.100 0.900 5 C -0.234 4.234 6 O -0.306 6.306 7 C -0.035 4.035 8 C 0.297 3.703 9 O -0.454 6.454 10 N -0.367 5.367 11 C 0.010 3.990 12 C 0.007 3.993 13 H 0.114 0.886 14 C -0.174 4.174 15 C -0.155 4.155 16 C 0.044 3.956 17 C -0.019 4.019 18 N -0.374 5.374 19 C -0.416 4.416 20 H 0.073 0.927 21 C -0.272 4.272 22 N -0.610 5.610 23 Si 0.921 3.079 24 H -0.204 1.204 25 H -0.182 1.182 26 H -0.228 1.228 27 C -0.020 4.020 28 O -0.279 6.279 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.254 0.746 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.122 0.878 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.073 0.927 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.328 -29.387 -8.296 30.841 hybrid contribution -1.536 1.286 -0.912 2.201 sum -5.865 -28.101 -9.208 30.147 Atomic orbital electron populations 1.21721 0.95458 1.01987 1.01633 1.21670 0.96579 0.94537 1.03052 1.22444 0.94892 0.94392 0.86237 0.90006 1.22314 0.95476 1.02634 1.02927 1.88026 1.89775 1.18804 1.34028 1.22339 1.03491 0.83669 0.93978 1.20831 0.76403 0.82149 0.90929 1.90706 1.52803 1.59903 1.41988 1.45755 1.70013 1.07832 1.13119 1.21431 1.01533 0.90695 0.85350 1.23406 0.87115 0.91218 0.97529 0.88644 1.22943 1.02475 0.94797 0.97146 1.22342 0.99362 0.98549 0.95273 1.23081 0.96427 0.81372 0.94767 1.22878 0.95404 0.87159 0.96470 1.45955 1.25410 0.99801 1.66267 1.19923 1.00503 0.79722 1.41417 0.92692 1.26954 1.04285 0.97416 0.98556 1.71009 1.30870 1.10091 1.49030 0.83373 0.72580 0.74076 0.77851 1.20431 1.18228 1.22826 1.22755 0.94484 0.86206 0.98511 1.88923 1.36436 1.20230 1.82344 0.94105 0.91843 0.92061 0.88504 0.92507 0.89623 0.92299 0.93062 0.87344 0.88302 0.74627 0.92035 0.88897 0.89175 0.87819 0.90804 0.90646 0.92456 0.92936 0.94211 0.92664 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.81 71.98 0.71 -1.16 16 2 C -0.12 -1.45 5.64 30.60 0.17 -1.28 16 3 C 0.08 1.00 2.72 30.60 0.08 1.08 16 4 H 0.08 0.71 7.79 -2.39 -0.02 0.69 16 5 C -0.18 -2.03 9.53 71.98 0.69 -1.34 16 6 O -0.39 -7.77 9.06 -129.94 -1.18 -8.95 16 7 C 0.04 0.67 6.23 71.24 0.44 1.12 16 8 C 0.51 11.20 7.91 87.66 0.69 11.89 16 9 O -0.58 -18.39 16.50 16.01 0.26 -18.12 16 10 N -0.71 -12.60 5.51 -463.06 -2.55 -15.15 16 11 C 0.13 2.52 5.28 86.38 0.46 2.98 16 12 C 0.06 1.25 3.35 31.12 0.10 1.35 16 13 H 0.10 1.52 8.14 -2.38 -0.02 1.51 16 14 C -0.14 -2.56 6.65 31.72 0.21 -2.34 16 15 C -0.12 -3.26 6.50 31.31 0.20 -3.05 16 16 C 0.08 2.72 1.39 -11.04 -0.02 2.71 16 17 C 0.11 3.89 8.18 83.49 0.68 4.57 16 18 N -0.64 -30.59 3.61 -740.30 -2.67 -33.26 16 19 C -0.29 -16.52 11.03 84.03 0.93 -15.59 16 20 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 22 N -0.97 -61.86 13.70 21.65 0.30 -61.57 16 23 Si 1.10 53.41 25.51 68.60 1.75 55.16 16 24 H -0.28 -12.76 6.97 99.48 0.69 -12.07 16 25 H -0.26 -11.41 5.64 99.48 0.56 -10.84 16 26 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 27 C 0.11 4.31 5.19 83.58 0.43 4.74 16 28 O -0.36 -9.77 11.12 -148.98 -1.66 -11.43 16 29 H 0.04 0.69 7.82 -2.39 -0.02 0.68 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.66 7.87 -2.39 -0.02 0.64 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 0.96 8.09 -2.39 -0.02 0.94 16 38 H 0.10 1.10 7.87 -2.39 -0.02 1.08 16 39 H 0.42 5.47 8.47 -92.71 -0.79 4.69 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 1.53 7.87 -2.39 -0.02 1.51 16 43 H 0.10 1.50 8.14 -2.38 -0.02 1.49 16 44 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 45 H 0.07 2.25 7.92 -2.39 -0.02 2.23 16 46 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 47 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.25 15.93 8.73 -92.71 -0.81 15.12 16 49 H 0.06 2.25 6.97 -2.39 -0.02 2.23 16 50 H 0.05 2.16 6.28 -2.39 -0.01 2.15 16 Total: -1.00 -78.18 399.12 0.43 -77.75 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.07 Total: 14.15 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 6.25 Total: 1.41 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -4.93 Total: -109.98 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -2.57 Total: -38.49 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 1.75 Total: 55.16 kcal Total: -78.18 0.43 -77.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.601 kcal (2) G-P(sol) polarization free energy of solvation -78.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds