Wall clock time and date at job start Tue Mar 31 2020 15:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47301 * 2 1 4 4 H 1.09003 * 109.48803 * 54.97887 * 3 2 1 5 5 C 1.53091 * 109.47996 * 175.00152 * 3 2 1 6 6 C 1.53182 * 109.16676 * 177.59204 * 5 3 2 7 7 H 1.08996 * 109.54630 * 183.06247 * 6 5 3 8 8 C 1.50702 * 109.54049 * 62.88534 * 6 5 3 9 9 O 1.21282 * 119.99965 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00067 * 180.02562 * 8 6 5 11 11 C 1.46495 * 120.00296 * 185.00869 * 10 8 6 12 12 C 1.53007 * 113.41174 * 282.15768 * 11 10 8 13 13 C 1.52995 * 109.47133 * 312.32946 * 12 11 10 14 14 O 1.42905 * 109.47066 * 175.06153 * 13 12 11 15 15 C 1.53497 * 114.20629 * 55.35367 * 11 10 8 16 16 N 1.47070 * 87.98077 * 87.52276 * 15 11 10 17 17 C 1.36939 * 136.05335 * 207.08545 * 16 15 11 18 18 H 1.08000 * 120.00628 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99808 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00007 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99983 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46782 * 60.00636 * 21 19 17 23 23 H 1.48499 * 109.47178 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47403 * 300.00252 * 21 19 17 25 25 C 1.47067 * 87.88852 * 27.12156 * 16 15 11 26 26 C 1.53181 * 109.03238 * 303.02315 * 6 5 3 27 27 C 1.53086 * 109.16438 * 56.97898 * 26 6 5 28 28 O 1.42904 * 109.48089 * 294.94554 * 3 2 1 29 29 H 1.08999 * 109.47552 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46544 * 299.99757 * 1 2 3 31 31 H 1.08996 * 109.47377 * 59.99367 * 1 2 3 32 32 H 1.09004 * 109.46830 * 240.00616 * 2 1 3 33 33 H 1.08996 * 109.47377 * 120.00633 * 2 1 3 34 34 H 1.09002 * 109.52347 * 57.69112 * 5 3 2 35 35 H 1.09000 * 109.57595 * 297.52897 * 5 3 2 36 36 H 0.96998 * 119.99935 * 5.01589 * 10 8 6 37 37 H 1.08996 * 109.46954 * 72.33450 * 12 11 10 38 38 H 1.09008 * 109.46546 * 192.32884 * 12 11 10 39 39 H 1.09004 * 109.46810 * 295.05491 * 13 12 11 40 40 H 1.08994 * 109.47159 * 55.05667 * 13 12 11 41 41 H 0.96695 * 114.00130 * 180.02562 * 14 13 12 42 42 H 1.08999 * 113.46832 * 332.74219 * 15 11 10 43 43 H 1.08997 * 113.46790 * 202.30186 * 15 11 10 44 44 H 0.97000 * 120.00408 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.46347 * 87.65386 * 25 16 15 46 46 H 1.08995 * 113.46882 * 218.04179 * 25 16 15 47 47 H 1.09005 * 109.51956 * 176.88056 * 26 6 5 48 48 H 1.08991 * 109.52380 * 297.06900 * 26 6 5 49 49 H 1.09003 * 109.48125 * 182.40986 * 27 26 6 50 50 H 1.09001 * 109.48326 * 62.37134 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9819 0.8415 5 6 3.5657 1.4445 0.1258 6 6 4.0735 2.8884 0.0645 7 1 5.1629 2.8936 0.0988 8 6 3.5285 3.6645 1.2357 9 8 2.8053 3.1180 2.0416 10 7 3.8447 4.9657 1.3877 11 6 3.4062 5.6915 2.5823 12 6 1.9336 6.1043 2.5364 13 6 1.6278 6.7535 1.1852 14 8 0.2294 7.0346 1.0974 15 6 3.8374 5.0442 3.9056 16 7 5.0930 5.8038 3.8080 17 6 6.3787 5.6447 4.2517 18 1 6.6463 4.7729 4.8303 19 6 7.3383 6.6034 3.9569 20 7 7.0123 7.6656 3.2514 21 14 9.0919 6.3868 4.5628 22 1 9.6564 5.1312 4.0059 23 1 9.9152 7.5400 4.1184 24 1 9.0982 6.3172 6.0461 25 6 4.3599 6.8099 3.0248 26 6 3.5970 3.5305 -1.2420 27 6 2.0701 3.4479 -1.3149 28 8 1.6632 2.0812 -1.2215 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9995 0.8709 -0.6934 35 1 3.8544 0.9969 1.0768 36 1 4.3626 5.4218 0.7060 37 1 1.3051 5.2235 2.6670 38 1 1.7311 6.8169 3.3361 39 1 2.1915 7.6818 1.0923 40 1 1.9129 6.0734 0.3826 41 1 -0.0372 7.4477 0.2648 42 1 3.9763 3.9653 3.8362 43 1 3.2182 5.3363 4.7538 44 1 7.6827 8.3358 3.0457 45 1 3.8798 7.5722 3.6385 46 1 4.9433 7.2330 2.2071 47 1 3.9069 4.5752 -1.2687 48 1 4.0313 2.9990 -2.0887 49 1 1.7282 3.8650 -2.2622 50 1 1.6357 4.0136 -0.4906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755337692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:35 Heat of formation + Delta-G solvation = -87.133738 kcal Electronic energy + Delta-G solvation = -30523.537394 eV Core-core repulsion = 26552.334352 eV Total energy + Delta-G solvation = -3971.203042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.73067 -39.19926 -37.39027 -36.58906 -34.27014 -33.57725 -33.39877 -31.84267 -30.62423 -29.79130 -27.17993 -25.81555 -24.85961 -23.84797 -23.57820 -22.39585 -21.24844 -21.05176 -19.44317 -18.76887 -17.36838 -16.71291 -16.53987 -16.35730 -16.24516 -15.31172 -15.17996 -14.75701 -14.68223 -14.35617 -14.11394 -13.79834 -13.70553 -13.68664 -13.50719 -13.25548 -12.83857 -12.62286 -12.36964 -12.05189 -11.86723 -11.73869 -11.62994 -11.38677 -11.21685 -11.17109 -11.00645 -10.93660 -10.89725 -10.74809 -10.66067 -10.29619 -10.12400 -9.88283 -9.75465 -9.59392 -9.28961 -9.07273 -8.85474 -8.49332 -6.94419 -5.84388 -3.15541 2.97429 3.34901 3.39712 3.40272 3.50528 3.80993 4.30936 4.44029 4.55728 4.70566 4.78681 4.87691 4.99430 5.09362 5.18898 5.21496 5.22828 5.31563 5.38784 5.41552 5.47306 5.53259 5.56568 5.59757 5.70091 5.73874 5.83947 5.85749 5.92427 5.94234 5.97282 6.03346 6.09455 6.22495 6.22918 6.27650 6.36040 6.45644 6.53372 6.62517 6.84627 7.03760 7.29451 7.30597 7.41935 7.71612 7.88847 7.93782 8.63411 8.96978 9.63308 10.55981 11.33342 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.004058 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.226904 B = 6898.057168 C = 7926.971670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.079 3.921 4 H 0.088 0.912 5 C -0.126 4.126 6 C -0.114 4.114 7 H 0.102 0.898 8 C 0.521 3.479 9 O -0.538 6.538 10 N -0.686 5.686 11 C 0.117 3.883 12 C -0.108 4.108 13 C 0.081 3.919 14 O -0.576 6.576 15 C 0.123 3.877 16 N -0.606 5.606 17 C -0.213 4.213 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.159 3.841 26 C -0.146 4.146 27 C 0.061 3.939 28 O -0.381 6.381 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.399 0.601 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.373 0.627 42 H 0.054 0.946 43 H 0.041 0.959 44 H 0.254 0.746 45 H 0.039 0.961 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 -7.437 -11.715 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.022 3.978 4 H 0.106 0.894 5 C -0.164 4.164 6 C -0.135 4.135 7 H 0.120 0.880 8 C 0.307 3.693 9 O -0.416 6.416 10 N -0.335 5.335 11 C 0.029 3.971 12 C -0.148 4.148 13 C 0.003 3.997 14 O -0.381 6.381 15 C -0.004 4.004 16 N -0.331 5.331 17 C -0.340 4.340 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C 0.033 3.967 26 C -0.184 4.184 27 C -0.016 4.016 28 O -0.300 6.300 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.219 0.781 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.110 0.890 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.645 -8.103 -10.597 17.066 hybrid contribution 1.688 0.754 -0.238 1.864 sum -8.957 -7.349 -10.835 15.863 Atomic orbital electron populations 1.21702 0.95478 1.01070 1.02310 1.21506 0.96574 0.94755 1.02200 1.22442 0.93453 0.94146 0.87737 0.89412 1.21965 0.96871 0.94501 1.03041 1.21431 1.02342 0.96067 0.93701 0.88031 1.20365 0.80413 0.81980 0.86495 1.90610 1.36940 1.69040 1.44975 1.45405 1.55545 1.10294 1.22263 1.21969 0.91724 0.96963 0.86481 1.21613 0.95790 1.00976 0.96421 1.22157 0.80982 0.98382 0.98156 1.86494 1.25110 1.84088 1.42435 1.22619 0.87886 0.97252 0.92657 1.45486 1.03106 1.21786 1.62714 1.18871 0.82116 1.04844 1.28157 0.90255 1.24742 0.98133 0.96667 1.00796 1.69782 1.33175 1.11176 1.42896 0.86193 0.84126 0.76944 0.78472 1.21142 1.21542 1.21164 1.22378 0.89043 0.90327 0.94995 1.22185 0.97594 1.01657 0.96983 1.22529 0.93245 0.83886 1.01935 1.87856 1.78739 1.24148 1.39277 0.93137 0.92780 0.92169 0.91722 0.90748 0.90985 0.90176 0.76646 0.90833 0.90477 0.93524 0.94048 0.78116 0.92780 0.94183 0.93615 0.94373 0.90720 0.90468 0.90070 0.89028 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.81 37.16 0.36 -1.21 16 2 C -0.11 -1.25 5.64 -26.73 -0.15 -1.41 16 3 C 0.08 1.03 2.35 -26.68 -0.06 0.97 16 4 H 0.09 1.37 5.80 -51.93 -0.30 1.07 16 5 C -0.13 -1.56 4.56 -26.59 -0.12 -1.68 16 6 C -0.11 -1.45 3.05 -91.58 -0.28 -1.73 16 7 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 8 C 0.52 8.27 5.40 -10.99 -0.06 8.22 16 9 O -0.54 -9.94 12.08 5.56 0.07 -9.87 16 10 N -0.69 -11.03 4.08 -47.43 -0.19 -11.22 16 11 C 0.12 2.12 0.75 -131.70 -0.10 2.02 16 12 C -0.11 -1.75 5.22 -26.73 -0.14 -1.89 16 13 C 0.08 1.10 6.88 37.15 0.26 1.35 16 14 O -0.58 -7.61 13.66 -35.23 -0.48 -8.09 16 15 C 0.12 2.63 7.55 -8.49 -0.06 2.57 16 16 N -0.61 -15.11 3.78 -184.71 -0.70 -15.81 16 17 C -0.21 -5.86 10.75 -15.06 -0.16 -6.02 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -26.13 11.51 55.49 0.64 -25.49 16 21 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.16 3.48 6.77 -8.49 -0.06 3.43 16 26 C -0.15 -1.52 5.57 -26.59 -0.15 -1.66 16 27 C 0.06 0.69 6.62 37.20 0.25 0.93 16 28 O -0.38 -4.96 9.94 -35.23 -0.35 -5.31 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.06 8.03 -51.93 -0.42 0.65 16 36 H 0.40 5.86 8.08 -40.82 -0.33 5.53 16 37 H 0.07 1.29 7.90 -51.93 -0.41 0.88 16 38 H 0.08 1.26 7.91 -51.92 -0.41 0.85 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.53 6.81 -51.93 -0.35 0.17 16 41 H 0.37 3.06 9.12 45.56 0.42 3.48 16 42 H 0.05 1.22 6.68 -51.93 -0.35 0.88 16 43 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.04 0.86 7.94 -51.93 -0.41 0.45 16 46 H 0.07 1.76 7.12 -51.93 -0.37 1.39 16 47 H 0.08 0.71 7.42 -51.93 -0.39 0.32 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.05 0.65 6.83 -51.93 -0.35 0.29 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -32.17 387.31 -8.63 -40.80 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.85 Total: 8.87 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.57 Total: 3.59 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.25 Total: -52.52 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.76 Total: -23.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.17 -8.63 -40.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755337692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.336 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds