Wall clock time and date at job start Tue Mar 31 2020 15:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47301 * 2 1 4 4 H 1.09003 * 109.48803 * 54.97887 * 3 2 1 5 5 C 1.53091 * 109.47996 * 175.00152 * 3 2 1 6 6 C 1.53182 * 109.16676 * 177.59204 * 5 3 2 7 7 H 1.08996 * 109.54630 * 183.06247 * 6 5 3 8 8 C 1.50702 * 109.54049 * 62.88534 * 6 5 3 9 9 O 1.21282 * 119.99965 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00067 * 180.02562 * 8 6 5 11 11 C 1.46495 * 120.00296 * 185.00869 * 10 8 6 12 12 C 1.53007 * 113.41174 * 282.15768 * 11 10 8 13 13 C 1.52995 * 109.47133 * 312.32946 * 12 11 10 14 14 O 1.42905 * 109.47066 * 175.06153 * 13 12 11 15 15 C 1.53497 * 114.20629 * 55.35367 * 11 10 8 16 16 N 1.47070 * 87.98077 * 87.52276 * 15 11 10 17 17 C 1.36939 * 136.05335 * 207.08545 * 16 15 11 18 18 H 1.08000 * 120.00628 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99808 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00007 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99983 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46782 * 60.00636 * 21 19 17 23 23 H 1.48499 * 109.47178 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47403 * 300.00252 * 21 19 17 25 25 C 1.47067 * 87.88852 * 27.12156 * 16 15 11 26 26 C 1.53181 * 109.03238 * 303.02315 * 6 5 3 27 27 C 1.53086 * 109.16438 * 56.97898 * 26 6 5 28 28 O 1.42904 * 109.48089 * 294.94554 * 3 2 1 29 29 H 1.08999 * 109.47552 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46544 * 299.99757 * 1 2 3 31 31 H 1.08996 * 109.47377 * 59.99367 * 1 2 3 32 32 H 1.09004 * 109.46830 * 240.00616 * 2 1 3 33 33 H 1.08996 * 109.47377 * 120.00633 * 2 1 3 34 34 H 1.09002 * 109.52347 * 57.69112 * 5 3 2 35 35 H 1.09000 * 109.57595 * 297.52897 * 5 3 2 36 36 H 0.96998 * 119.99935 * 5.01589 * 10 8 6 37 37 H 1.08996 * 109.46954 * 72.33450 * 12 11 10 38 38 H 1.09008 * 109.46546 * 192.32884 * 12 11 10 39 39 H 1.09004 * 109.46810 * 295.05491 * 13 12 11 40 40 H 1.08994 * 109.47159 * 55.05667 * 13 12 11 41 41 H 0.96695 * 114.00130 * 180.02562 * 14 13 12 42 42 H 1.08999 * 113.46832 * 332.74219 * 15 11 10 43 43 H 1.08997 * 113.46790 * 202.30186 * 15 11 10 44 44 H 0.97000 * 120.00408 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.46347 * 87.65386 * 25 16 15 46 46 H 1.08995 * 113.46882 * 218.04179 * 25 16 15 47 47 H 1.09005 * 109.51956 * 176.88056 * 26 6 5 48 48 H 1.08991 * 109.52380 * 297.06900 * 26 6 5 49 49 H 1.09003 * 109.48125 * 182.40986 * 27 26 6 50 50 H 1.09001 * 109.48326 * 62.37134 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9819 0.8415 5 6 3.5657 1.4445 0.1258 6 6 4.0735 2.8884 0.0645 7 1 5.1629 2.8936 0.0988 8 6 3.5285 3.6645 1.2357 9 8 2.8053 3.1180 2.0416 10 7 3.8447 4.9657 1.3877 11 6 3.4062 5.6915 2.5823 12 6 1.9336 6.1043 2.5364 13 6 1.6278 6.7535 1.1852 14 8 0.2294 7.0346 1.0974 15 6 3.8374 5.0442 3.9056 16 7 5.0930 5.8038 3.8080 17 6 6.3787 5.6447 4.2517 18 1 6.6463 4.7729 4.8303 19 6 7.3383 6.6034 3.9569 20 7 7.0123 7.6656 3.2514 21 14 9.0919 6.3868 4.5628 22 1 9.6564 5.1312 4.0059 23 1 9.9152 7.5400 4.1184 24 1 9.0982 6.3172 6.0461 25 6 4.3599 6.8099 3.0248 26 6 3.5970 3.5305 -1.2420 27 6 2.0701 3.4479 -1.3149 28 8 1.6632 2.0812 -1.2215 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9995 0.8709 -0.6934 35 1 3.8544 0.9969 1.0768 36 1 4.3626 5.4218 0.7060 37 1 1.3051 5.2235 2.6670 38 1 1.7311 6.8169 3.3361 39 1 2.1915 7.6818 1.0923 40 1 1.9129 6.0734 0.3826 41 1 -0.0372 7.4477 0.2648 42 1 3.9763 3.9653 3.8362 43 1 3.2182 5.3363 4.7538 44 1 7.6827 8.3358 3.0457 45 1 3.8798 7.5722 3.6385 46 1 4.9433 7.2330 2.2071 47 1 3.9069 4.5752 -1.2687 48 1 4.0313 2.9990 -2.0887 49 1 1.7282 3.8650 -2.2622 50 1 1.6357 4.0136 -0.4906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755337692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:34 Heat of formation + Delta-G solvation = -110.648915 kcal Electronic energy + Delta-G solvation = -30524.557089 eV Core-core repulsion = 26552.334352 eV Total energy + Delta-G solvation = -3972.222737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99304 -40.53984 -38.70560 -37.72136 -35.39580 -34.92252 -34.58320 -33.58242 -32.02209 -30.69504 -29.01605 -26.86117 -26.62404 -25.30440 -24.59811 -23.51101 -22.77723 -22.11320 -20.71601 -20.18528 -18.84588 -18.30932 -17.74527 -17.33426 -17.21104 -16.93851 -16.44336 -16.39469 -15.88581 -15.59802 -15.50696 -15.22453 -14.95114 -14.75448 -14.57524 -14.38669 -14.29782 -14.05934 -13.51353 -13.28878 -13.11334 -13.09342 -12.84277 -12.78352 -12.71595 -12.64321 -12.51620 -12.22050 -12.07898 -11.93252 -11.81761 -11.68010 -11.58986 -11.32715 -11.11676 -11.01743 -10.82214 -10.58403 -10.18831 -9.90750 -8.94461 -7.93554 -5.26140 1.45031 1.47197 1.53377 1.70996 2.20579 2.44473 2.89560 3.16694 3.28459 3.39651 3.56998 3.59620 3.74206 3.83209 3.96301 4.08577 4.13427 4.28118 4.29956 4.33315 4.41450 4.46029 4.51286 4.59717 4.63270 4.69302 4.73457 4.75000 4.85046 4.88113 4.91337 4.93910 4.96875 5.03812 5.09618 5.11720 5.13856 5.14253 5.18335 5.24688 5.33557 5.42286 5.45498 5.76798 5.88109 6.35382 6.64779 6.88632 6.93268 7.35320 7.55425 8.55309 9.23082 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.004058 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.226904 B = 6898.057168 C = 7926.971670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.082 3.918 4 H 0.056 0.944 5 C -0.124 4.124 6 C -0.111 4.111 7 H 0.108 0.892 8 C 0.518 3.482 9 O -0.566 6.566 10 N -0.684 5.684 11 C 0.149 3.851 12 C -0.103 4.103 13 C 0.089 3.911 14 O -0.591 6.591 15 C 0.118 3.882 16 N -0.629 5.629 17 C -0.232 4.232 18 H 0.074 0.926 19 C -0.053 4.053 20 N -0.944 5.944 21 Si 0.975 3.025 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.163 3.837 26 C -0.139 4.139 27 C 0.057 3.943 28 O -0.388 6.388 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.408 0.592 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.396 0.604 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.031 0.969 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.117 0.883 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.273 -7.848 -13.677 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C 0.024 3.976 4 H 0.074 0.926 5 C -0.162 4.162 6 C -0.133 4.133 7 H 0.126 0.874 8 C 0.306 3.694 9 O -0.446 6.446 10 N -0.335 5.335 11 C 0.061 3.939 12 C -0.142 4.142 13 C 0.012 3.988 14 O -0.399 6.399 15 C -0.009 4.009 16 N -0.355 5.355 17 C -0.360 4.360 18 H 0.091 0.909 19 C -0.247 4.247 20 N -0.592 5.592 21 Si 0.804 3.196 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.037 3.963 26 C -0.176 4.176 27 C -0.020 4.020 28 O -0.307 6.307 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.244 0.756 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.246 0.754 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.110 0.890 48 H 0.119 0.881 49 H 0.135 0.865 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.497 -8.515 -12.590 18.471 hybrid contribution 1.561 0.870 0.414 1.835 sum -8.936 -7.645 -12.175 16.927 Atomic orbital electron populations 1.21673 0.95219 1.01962 1.01415 1.21528 0.96833 0.93721 1.02907 1.22330 0.93639 0.94773 0.86829 0.92577 1.21961 0.96624 0.94488 1.03087 1.21484 1.02485 0.95873 0.93424 0.87390 1.20988 0.79721 0.81629 0.87052 1.90609 1.38183 1.69486 1.46284 1.45380 1.55820 1.10635 1.21632 1.21479 0.92243 0.94359 0.85864 1.21494 0.93731 1.00575 0.98449 1.21978 0.81624 0.98730 0.96494 1.86429 1.24497 1.84513 1.44482 1.22723 0.86987 0.96250 0.94894 1.45748 1.03345 1.23269 1.63141 1.19132 0.83698 1.04921 1.28263 0.90860 1.25462 1.01578 0.96478 1.01153 1.69929 1.34007 1.11617 1.43678 0.85211 0.79675 0.76915 0.77838 1.20365 1.21515 1.20967 1.22305 0.89234 0.90665 0.94068 1.22194 0.96868 1.02651 0.95931 1.22684 0.93852 0.82963 1.02470 1.87849 1.79060 1.24976 1.38862 0.91357 0.93993 0.92694 0.90494 0.90464 0.88861 0.91626 0.75610 0.92159 0.90732 0.92678 0.92906 0.75393 0.94305 0.93940 0.93974 0.95105 0.92275 0.88950 0.88099 0.86528 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.81 71.98 0.71 -2.25 16 2 C -0.11 -2.38 5.64 30.59 0.17 -2.21 16 3 C 0.08 2.06 2.35 30.62 0.07 2.14 16 4 H 0.06 1.79 5.80 -2.39 -0.01 1.78 16 5 C -0.12 -2.93 4.56 30.69 0.14 -2.79 16 6 C -0.11 -2.67 3.05 -11.42 -0.03 -2.71 16 7 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 8 C 0.52 16.32 5.40 87.66 0.47 16.80 16 9 O -0.57 -21.38 12.08 -3.04 -0.04 -21.41 16 10 N -0.68 -21.74 4.08 -422.36 -1.72 -23.46 16 11 C 0.15 5.45 0.75 4.08 0.00 5.46 16 12 C -0.10 -3.31 5.22 30.59 0.16 -3.15 16 13 C 0.09 2.30 6.88 71.98 0.50 2.80 16 14 O -0.59 -14.51 13.66 -148.98 -2.04 -16.54 16 15 C 0.12 5.19 7.55 83.19 0.63 5.82 16 16 N -0.63 -32.05 3.78 -738.29 -2.79 -34.84 16 17 C -0.23 -12.98 10.75 84.03 0.90 -12.08 16 18 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 20 N -0.94 -53.72 11.51 21.65 0.25 -53.47 16 21 Si 0.98 44.66 29.55 68.60 2.03 46.68 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.16 7.26 6.77 83.19 0.56 7.82 16 26 C -0.14 -2.49 5.57 30.68 0.17 -2.32 16 27 C 0.06 1.16 6.62 72.01 0.48 1.64 16 28 O -0.39 -9.45 9.94 -148.98 -1.48 -10.93 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 32 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.73 8.03 -2.39 -0.02 1.71 16 36 H 0.41 11.54 8.08 -92.71 -0.75 10.80 16 37 H 0.06 2.13 7.90 -2.39 -0.02 2.11 16 38 H 0.07 2.43 7.91 -2.38 -0.02 2.41 16 39 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.05 1.24 6.81 -2.39 -0.02 1.23 16 41 H 0.40 5.53 9.12 -74.06 -0.68 4.85 16 42 H 0.04 1.82 6.68 -2.39 -0.02 1.80 16 43 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 44 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.03 1.42 7.94 -2.39 -0.02 1.40 16 46 H 0.06 2.81 7.12 -2.39 -0.02 2.79 16 47 H 0.09 1.40 7.42 -2.38 -0.02 1.38 16 48 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 49 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.03 0.77 6.83 -2.39 -0.02 0.75 16 Total: -1.00 -69.72 387.31 -0.88 -70.60 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.48 Total: 30.86 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.40 Total: 12.52 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -4.26 Total: -111.77 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -3.55 Total: -48.89 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.72 -0.88 -70.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755337692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.051 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds