Wall clock time and date at job start Tue Mar 31 2020 15:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 H 1.08998 * 109.48352 * 305.01916 * 3 2 1 5 5 C 1.53098 * 109.47980 * 185.00006 * 3 2 1 6 6 C 1.53176 * 109.16416 * 182.40973 * 5 3 2 7 7 H 1.08997 * 109.53957 * 176.84977 * 6 5 3 8 8 C 1.50698 * 109.54280 * 297.11335 * 6 5 3 9 9 O 1.21284 * 120.00114 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00068 * 179.97438 * 8 6 5 11 11 C 1.46498 * 119.99994 * 175.02930 * 10 8 6 12 12 C 1.52994 * 112.94791 * 293.04685 * 11 10 8 13 13 C 1.53000 * 109.47047 * 304.09092 * 12 11 10 14 14 O 1.42904 * 109.46976 * 175.18614 * 13 12 11 15 15 C 1.53954 * 113.74176 * 161.30977 * 11 10 8 16 16 N 1.47579 * 86.11726 * 222.05256 * 15 11 10 17 17 C 1.36936 * 134.48819 * 204.64768 * 16 15 11 18 18 H 1.08007 * 119.99781 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00368 * 359.97438 * 17 16 15 20 20 N 1.31621 * 119.99665 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47290 * 59.99845 * 21 19 17 23 23 H 1.48503 * 109.47393 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47043 * 300.00087 * 21 19 17 25 25 C 1.47576 * 91.01816 * 24.64004 * 16 15 11 26 26 C 1.53179 * 109.03613 * 56.97775 * 6 5 3 27 27 C 1.53092 * 109.16673 * 303.02135 * 26 6 5 28 28 O 1.42898 * 109.48222 * 65.06069 * 3 2 1 29 29 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47023 * 299.99895 * 1 2 3 31 31 H 1.08998 * 109.47581 * 59.99640 * 1 2 3 32 32 H 1.09000 * 109.46517 * 239.99953 * 2 1 3 33 33 H 1.08998 * 109.46867 * 120.00145 * 2 1 3 34 34 H 1.09001 * 109.51786 * 302.31681 * 5 3 2 35 35 H 1.09004 * 109.52247 * 62.49972 * 5 3 2 36 36 H 0.96998 * 119.99842 * 355.03570 * 10 8 6 37 37 H 1.08996 * 109.47520 * 64.09326 * 12 11 10 38 38 H 1.09008 * 109.47311 * 184.09076 * 12 11 10 39 39 H 1.08996 * 109.47184 * 295.18297 * 13 12 11 40 40 H 1.08997 * 109.47308 * 55.18946 * 13 12 11 41 41 H 0.96703 * 113.99975 * 180.02562 * 14 13 12 42 42 H 1.08994 * 113.76715 * 336.35401 * 15 11 10 43 43 H 1.08996 * 113.76494 * 107.74772 * 15 11 10 44 44 H 0.96998 * 119.99605 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.77032 * 221.05818 * 25 16 15 46 46 H 1.08995 * 113.87439 * 89.67535 * 25 16 15 47 47 H 1.08995 * 109.51887 * 183.11130 * 26 6 5 48 48 H 1.09000 * 109.56726 * 62.95847 * 26 6 5 49 49 H 1.08994 * 109.48023 * 297.62612 * 27 26 6 50 50 H 1.08991 * 109.48740 * 177.59434 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5658 1.4445 -0.1258 6 6 4.0734 2.8884 -0.0645 7 1 5.1629 2.8935 -0.0973 8 6 3.5284 3.6645 -1.2356 9 8 2.8053 3.1181 -2.0415 10 7 3.8446 4.9658 -1.3875 11 6 3.4053 5.6918 -2.5817 12 6 4.0762 5.1934 -3.8633 13 6 5.5961 5.2702 -3.7063 14 8 6.2232 4.7013 -4.8575 15 6 3.4309 7.2227 -2.4209 16 7 2.1339 7.2179 -3.1250 17 6 1.4460 8.1337 -3.8755 18 1 0.4839 7.8762 -4.2932 19 6 1.9848 9.3934 -4.0986 20 7 3.1571 9.7074 -3.5891 21 14 1.0460 10.6430 -5.1217 22 1 -0.2650 10.9216 -4.4823 23 1 1.8312 11.9003 -5.2104 24 1 0.8259 10.1002 -6.4863 25 6 1.8762 5.8296 -2.6958 26 6 3.5969 3.5305 1.2421 27 6 2.0700 3.4479 1.3150 28 8 1.6633 2.0811 1.2215 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9995 0.8708 0.6933 35 1 3.8534 0.9973 -1.0773 36 1 4.3631 5.4217 -0.7062 37 1 3.7819 4.1606 -4.0495 38 1 3.7656 5.8166 -4.7020 39 1 5.8988 6.3125 -3.6056 40 1 5.8980 4.7166 -2.8172 41 1 7.1897 4.7157 -4.8264 42 1 3.3672 7.5567 -1.3853 43 1 4.2314 7.7096 -2.9778 44 1 3.5337 10.5875 -3.7453 45 1 1.4355 5.2043 -3.4722 46 1 1.3557 5.7524 -1.7413 47 1 3.9070 4.5751 1.2687 48 1 4.0314 2.9998 2.0893 49 1 1.6356 4.0136 0.4909 50 1 1.7282 3.8649 2.2622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755337693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:40 Heat of formation + Delta-G solvation = -91.414443 kcal Electronic energy + Delta-G solvation = -30194.575459 eV Core-core repulsion = 26223.186791 eV Total energy + Delta-G solvation = -3971.388667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76015 -39.15877 -37.48360 -36.41910 -34.33392 -33.64734 -33.49700 -31.81542 -30.33801 -29.80485 -27.19427 -25.83583 -25.08489 -23.86835 -23.42260 -22.38260 -21.40343 -21.13541 -19.39040 -18.65486 -17.18880 -16.81387 -16.63400 -16.39400 -16.28547 -15.52635 -15.06897 -14.78968 -14.73558 -14.37607 -14.07679 -13.83354 -13.77764 -13.68041 -13.53720 -13.24337 -12.67612 -12.46218 -12.27780 -11.92767 -11.85358 -11.71448 -11.68919 -11.55830 -11.21360 -11.09660 -10.97186 -10.92858 -10.78297 -10.75921 -10.71998 -10.35220 -10.16055 -9.92936 -9.70662 -9.62679 -9.42363 -9.04392 -8.90591 -8.60167 -6.95387 -5.82942 -3.14791 2.84594 3.35911 3.40026 3.42872 3.45393 3.79031 4.42047 4.44733 4.47474 4.63747 4.67852 4.82870 4.96933 5.12056 5.16684 5.18533 5.23492 5.33280 5.39662 5.44431 5.48855 5.50168 5.54693 5.68490 5.69713 5.75621 5.78535 5.79253 5.87695 5.90659 5.92309 5.96810 6.05408 6.21576 6.30197 6.33107 6.45154 6.49433 6.62804 6.71382 6.81441 7.08156 7.28034 7.28758 7.45395 7.79864 7.85153 7.92104 8.51131 8.99291 9.65245 10.51453 11.34558 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.003609 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.739838 B = 7756.396566 C = 8595.904761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.078 3.922 4 H 0.088 0.912 5 C -0.126 4.126 6 C -0.114 4.114 7 H 0.097 0.903 8 C 0.515 3.485 9 O -0.531 6.531 10 N -0.715 5.715 11 C 0.123 3.877 12 C -0.094 4.094 13 C 0.082 3.918 14 O -0.575 6.575 15 C 0.167 3.833 16 N -0.604 5.604 17 C -0.221 4.221 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.131 3.869 26 C -0.146 4.146 27 C 0.059 3.941 28 O -0.381 6.381 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.395 0.605 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.372 0.628 42 H 0.029 0.971 43 H 0.081 0.919 44 H 0.255 0.745 45 H 0.051 0.949 46 H 0.034 0.966 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.053 0.947 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.749 -15.240 10.390 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.106 0.894 5 C -0.164 4.164 6 C -0.135 4.135 7 H 0.115 0.885 8 C 0.300 3.700 9 O -0.407 6.407 10 N -0.366 5.366 11 C 0.037 3.963 12 C -0.132 4.132 13 C 0.005 3.995 14 O -0.380 6.380 15 C 0.041 3.959 16 N -0.330 5.330 17 C -0.348 4.348 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.005 3.995 26 C -0.184 4.184 27 C -0.017 4.017 28 O -0.300 6.300 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.229 0.771 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.217 0.783 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.440 -15.483 9.581 18.741 hybrid contribution 0.646 1.372 0.020 1.517 sum 5.086 -14.110 9.601 17.809 Atomic orbital electron populations 1.21706 0.95403 1.01110 1.02438 1.21499 0.96684 0.94674 1.02112 1.22444 0.93300 0.94248 0.87933 0.89384 1.21971 0.97137 0.94382 1.02920 1.21453 1.01790 0.96284 0.94009 0.88456 1.20482 0.80735 0.82282 0.86474 1.90646 1.36144 1.69067 1.44864 1.46237 1.56472 1.10554 1.23338 1.22942 0.95912 0.93698 0.83792 1.21315 0.92065 1.02601 0.97250 1.22135 0.94130 0.96649 0.86625 1.86502 1.23435 1.84429 1.43587 1.22528 0.91110 0.86677 0.95621 1.45663 1.19613 1.10623 1.57149 1.18961 1.00845 0.91957 1.23051 0.90068 1.24758 0.97324 0.97329 1.00796 1.69773 1.17401 1.21185 1.48656 0.86177 0.78781 0.80631 0.80059 1.21160 1.21546 1.20973 1.22749 0.92265 0.87142 0.97384 1.22181 0.97882 1.01629 0.96695 1.22529 0.93123 0.83733 1.02363 1.87864 1.78791 1.24231 1.39102 0.93116 0.92117 0.92697 0.90796 0.91746 0.90969 0.90254 0.77078 0.91008 0.89197 0.93254 0.94620 0.78255 0.95295 0.90089 0.93555 0.93101 0.94875 0.90360 0.90128 0.92898 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.81 37.16 0.36 -1.22 16 2 C -0.11 -1.20 5.64 -26.73 -0.15 -1.35 16 3 C 0.08 0.97 2.35 -26.68 -0.06 0.91 16 4 H 0.09 1.36 5.80 -51.93 -0.30 1.06 16 5 C -0.13 -1.38 4.56 -26.59 -0.12 -1.50 16 6 C -0.11 -1.21 3.05 -91.59 -0.28 -1.49 16 7 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 8 C 0.51 7.28 5.49 -10.99 -0.06 7.22 16 9 O -0.53 -9.32 12.29 5.55 0.07 -9.25 16 10 N -0.71 -10.15 4.38 -49.06 -0.22 -10.36 16 11 C 0.12 2.25 0.67 -134.02 -0.09 2.16 16 12 C -0.09 -1.76 4.86 -26.73 -0.13 -1.89 16 13 C 0.08 1.29 6.86 37.16 0.25 1.55 16 14 O -0.58 -8.91 13.66 -35.23 -0.48 -9.39 16 15 C 0.17 3.66 6.72 -2.97 -0.02 3.64 16 16 N -0.60 -15.18 3.54 -177.70 -0.63 -15.81 16 17 C -0.22 -6.13 10.70 -15.06 -0.16 -6.29 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -26.41 11.38 55.49 0.63 -25.78 16 21 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 C 0.13 2.82 7.41 -2.97 -0.02 2.80 16 26 C -0.15 -1.37 5.57 -26.59 -0.15 -1.51 16 27 C 0.06 0.68 6.62 37.21 0.25 0.93 16 28 O -0.38 -4.93 9.94 -35.23 -0.35 -5.28 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 36 H 0.40 4.58 7.99 -40.82 -0.33 4.25 16 37 H 0.07 1.42 7.24 -51.93 -0.38 1.04 16 38 H 0.09 1.98 8.02 -51.92 -0.42 1.56 16 39 H 0.05 0.79 7.62 -51.93 -0.40 0.40 16 40 H 0.04 0.49 7.53 -51.93 -0.39 0.10 16 41 H 0.37 3.75 9.12 45.56 0.42 4.17 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.95 6.60 -51.93 -0.34 1.61 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 45 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.64 7.42 -51.93 -0.39 0.25 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.05 0.72 7.38 -51.93 -0.38 0.34 16 50 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -32.65 388.09 -8.55 -41.20 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.92 Total: 8.18 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.48 Total: 3.71 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.21 Total: -51.95 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.76 Total: -23.92 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.65 -8.55 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755337693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.214 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds