Wall clock time and date at job start Tue Mar 31 2020 15:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 H 1.08998 * 109.48352 * 305.01916 * 3 2 1 5 5 C 1.53098 * 109.47980 * 185.00006 * 3 2 1 6 6 C 1.53176 * 109.16416 * 182.40973 * 5 3 2 7 7 H 1.08997 * 109.53957 * 176.84977 * 6 5 3 8 8 C 1.50698 * 109.54280 * 297.11335 * 6 5 3 9 9 O 1.21284 * 120.00114 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00068 * 179.97438 * 8 6 5 11 11 C 1.46498 * 119.99994 * 175.02930 * 10 8 6 12 12 C 1.52994 * 112.94791 * 293.04685 * 11 10 8 13 13 C 1.53000 * 109.47047 * 304.09092 * 12 11 10 14 14 O 1.42904 * 109.46976 * 175.18614 * 13 12 11 15 15 C 1.53954 * 113.74176 * 161.30977 * 11 10 8 16 16 N 1.47579 * 86.11726 * 222.05256 * 15 11 10 17 17 C 1.36936 * 134.48819 * 204.64768 * 16 15 11 18 18 H 1.08007 * 119.99781 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00368 * 359.97438 * 17 16 15 20 20 N 1.31621 * 119.99665 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47290 * 59.99845 * 21 19 17 23 23 H 1.48503 * 109.47393 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47043 * 300.00087 * 21 19 17 25 25 C 1.47576 * 91.01816 * 24.64004 * 16 15 11 26 26 C 1.53179 * 109.03613 * 56.97775 * 6 5 3 27 27 C 1.53092 * 109.16673 * 303.02135 * 26 6 5 28 28 O 1.42898 * 109.48222 * 65.06069 * 3 2 1 29 29 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47023 * 299.99895 * 1 2 3 31 31 H 1.08998 * 109.47581 * 59.99640 * 1 2 3 32 32 H 1.09000 * 109.46517 * 239.99953 * 2 1 3 33 33 H 1.08998 * 109.46867 * 120.00145 * 2 1 3 34 34 H 1.09001 * 109.51786 * 302.31681 * 5 3 2 35 35 H 1.09004 * 109.52247 * 62.49972 * 5 3 2 36 36 H 0.96998 * 119.99842 * 355.03570 * 10 8 6 37 37 H 1.08996 * 109.47520 * 64.09326 * 12 11 10 38 38 H 1.09008 * 109.47311 * 184.09076 * 12 11 10 39 39 H 1.08996 * 109.47184 * 295.18297 * 13 12 11 40 40 H 1.08997 * 109.47308 * 55.18946 * 13 12 11 41 41 H 0.96703 * 113.99975 * 180.02562 * 14 13 12 42 42 H 1.08994 * 113.76715 * 336.35401 * 15 11 10 43 43 H 1.08996 * 113.76494 * 107.74772 * 15 11 10 44 44 H 0.96998 * 119.99605 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.77032 * 221.05818 * 25 16 15 46 46 H 1.08995 * 113.87439 * 89.67535 * 25 16 15 47 47 H 1.08995 * 109.51887 * 183.11130 * 26 6 5 48 48 H 1.09000 * 109.56726 * 62.95847 * 26 6 5 49 49 H 1.08994 * 109.48023 * 297.62612 * 27 26 6 50 50 H 1.08991 * 109.48740 * 177.59434 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5658 1.4445 -0.1258 6 6 4.0734 2.8884 -0.0645 7 1 5.1629 2.8935 -0.0973 8 6 3.5284 3.6645 -1.2356 9 8 2.8053 3.1181 -2.0415 10 7 3.8446 4.9658 -1.3875 11 6 3.4053 5.6918 -2.5817 12 6 4.0762 5.1934 -3.8633 13 6 5.5961 5.2702 -3.7063 14 8 6.2232 4.7013 -4.8575 15 6 3.4309 7.2227 -2.4209 16 7 2.1339 7.2179 -3.1250 17 6 1.4460 8.1337 -3.8755 18 1 0.4839 7.8762 -4.2932 19 6 1.9848 9.3934 -4.0986 20 7 3.1571 9.7074 -3.5891 21 14 1.0460 10.6430 -5.1217 22 1 -0.2650 10.9216 -4.4823 23 1 1.8312 11.9003 -5.2104 24 1 0.8259 10.1002 -6.4863 25 6 1.8762 5.8296 -2.6958 26 6 3.5969 3.5305 1.2421 27 6 2.0700 3.4479 1.3150 28 8 1.6633 2.0811 1.2215 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9995 0.8708 0.6933 35 1 3.8534 0.9973 -1.0773 36 1 4.3631 5.4217 -0.7062 37 1 3.7819 4.1606 -4.0495 38 1 3.7656 5.8166 -4.7020 39 1 5.8988 6.3125 -3.6056 40 1 5.8980 4.7166 -2.8172 41 1 7.1897 4.7157 -4.8264 42 1 3.3672 7.5567 -1.3853 43 1 4.2314 7.7096 -2.9778 44 1 3.5337 10.5875 -3.7453 45 1 1.4355 5.2043 -3.4722 46 1 1.3557 5.7524 -1.7413 47 1 3.9070 4.5751 1.2687 48 1 4.0314 2.9998 2.0893 49 1 1.6356 4.0136 0.4909 50 1 1.7282 3.8649 2.2622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755337693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:39 Heat of formation + Delta-G solvation = -115.930053 kcal Electronic energy + Delta-G solvation = -30195.638535 eV Core-core repulsion = 26223.186791 eV Total energy + Delta-G solvation = -3972.451744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93043 -40.51097 -38.76570 -37.71478 -35.45234 -34.93229 -34.57626 -33.59152 -31.82320 -30.67270 -29.05895 -26.89687 -26.85086 -25.18620 -24.52718 -23.58055 -22.96410 -22.10319 -20.54742 -20.13904 -18.79390 -18.42859 -17.76906 -17.33544 -17.20467 -17.08705 -16.67652 -16.19131 -15.98677 -15.67623 -15.44356 -15.23198 -15.02047 -14.64897 -14.52827 -14.40087 -14.11051 -13.90438 -13.38104 -13.34083 -13.27783 -13.02416 -12.87588 -12.79777 -12.69091 -12.60050 -12.50496 -12.26501 -12.10111 -12.04279 -11.82048 -11.74271 -11.57896 -11.38639 -11.28236 -10.95496 -10.86392 -10.60406 -10.16326 -9.98236 -8.98025 -7.95035 -5.28129 1.44684 1.47458 1.53341 1.71936 2.14330 2.48483 2.89942 3.13080 3.24833 3.36673 3.58935 3.61506 3.76219 3.85713 3.98514 4.09896 4.11909 4.24323 4.29456 4.32118 4.35908 4.46959 4.47938 4.55339 4.65494 4.69206 4.70047 4.74761 4.83156 4.88376 4.94345 4.96106 5.01687 5.05352 5.10213 5.11644 5.13467 5.15895 5.19749 5.22974 5.34622 5.44721 5.45520 5.72963 5.88270 6.36176 6.66531 6.88886 6.90914 7.37632 7.54710 8.48112 9.21385 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.003609 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.739838 B = 7756.396566 C = 8595.904761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.075 3.925 4 H 0.051 0.949 5 C -0.124 4.124 6 C -0.106 4.106 7 H 0.132 0.868 8 C 0.513 3.487 9 O -0.566 6.566 10 N -0.705 5.705 11 C 0.158 3.842 12 C -0.088 4.088 13 C 0.093 3.907 14 O -0.593 6.593 15 C 0.173 3.827 16 N -0.631 5.631 17 C -0.242 4.242 18 H 0.076 0.924 19 C -0.054 4.054 20 N -0.945 5.945 21 Si 0.976 3.024 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.280 1.280 25 C 0.130 3.870 26 C -0.139 4.139 27 C 0.052 3.948 28 O -0.391 6.391 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.034 0.966 43 H 0.059 0.941 44 H 0.252 0.748 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.094 0.906 48 H 0.106 0.894 49 H 0.021 0.979 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 -16.306 12.181 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C 0.018 3.982 4 H 0.069 0.931 5 C -0.161 4.161 6 C -0.127 4.127 7 H 0.150 0.850 8 C 0.301 3.699 9 O -0.445 6.445 10 N -0.358 5.358 11 C 0.070 3.930 12 C -0.127 4.127 13 C 0.015 3.985 14 O -0.402 6.402 15 C 0.047 3.953 16 N -0.358 5.358 17 C -0.370 4.370 18 H 0.094 0.906 19 C -0.248 4.248 20 N -0.593 5.593 21 Si 0.804 3.196 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.206 1.206 25 C 0.003 3.997 26 C -0.176 4.176 27 C -0.025 4.025 28 O -0.310 6.310 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.250 0.750 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.247 0.753 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.113 0.887 48 H 0.124 0.876 49 H 0.040 0.960 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.295 -16.572 11.408 21.081 hybrid contribution 0.010 1.637 -0.544 1.725 sum 6.305 -14.935 10.864 19.515 Atomic orbital electron populations 1.21692 0.95791 1.01899 1.01164 1.21523 0.96394 0.93812 1.03095 1.22403 0.94633 0.94611 0.86588 0.93120 1.21970 0.95713 0.94895 1.03565 1.21518 1.03500 0.95266 0.92431 0.85028 1.21241 0.79801 0.81825 0.87079 1.90657 1.37599 1.69728 1.46517 1.45986 1.56724 1.10761 1.22355 1.22128 0.93447 0.91987 0.85416 1.21168 0.94897 1.00731 0.95883 1.21952 0.91617 0.97073 0.87841 1.86440 1.25881 1.84277 1.43560 1.22413 0.89081 0.88852 0.94915 1.45948 1.20829 1.11482 1.57512 1.19259 1.01104 0.92944 1.23686 0.90592 1.25511 0.98309 0.98877 1.02095 1.69921 1.18434 1.21265 1.49662 0.85197 0.77668 0.78133 0.78581 1.20507 1.21392 1.20600 1.22789 0.94860 0.85404 0.96602 1.22193 0.95810 1.02978 0.96651 1.22663 0.95030 0.82837 1.01926 1.87851 1.79398 1.24808 1.38974 0.91280 0.93039 0.94297 0.90110 0.90281 0.88423 0.90908 0.74969 0.92093 0.93227 0.93568 0.91633 0.75325 0.94865 0.92284 0.93907 0.94767 0.94725 0.88719 0.87576 0.96046 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.81 71.98 0.71 -2.41 16 2 C -0.11 -2.24 5.64 30.59 0.17 -2.07 16 3 C 0.07 1.81 2.35 30.63 0.07 1.89 16 4 H 0.05 1.62 5.80 -2.39 -0.01 1.61 16 5 C -0.12 -2.37 4.56 30.69 0.14 -2.23 16 6 C -0.11 -1.90 3.05 -11.42 -0.03 -1.93 16 7 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 8 C 0.51 13.81 5.49 87.66 0.48 14.29 16 9 O -0.57 -20.07 12.29 -3.04 -0.04 -20.11 16 10 N -0.71 -19.04 4.38 -427.53 -1.87 -20.91 16 11 C 0.16 5.86 0.67 5.36 0.00 5.87 16 12 C -0.09 -3.37 4.86 30.59 0.15 -3.23 16 13 C 0.09 2.81 6.86 71.98 0.49 3.30 16 14 O -0.59 -17.52 13.66 -148.98 -2.04 -19.55 16 15 C 0.17 7.73 6.72 86.48 0.58 8.31 16 16 N -0.63 -32.85 3.54 -716.11 -2.54 -35.39 16 17 C -0.24 -13.85 10.70 84.03 0.90 -12.95 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 19 C -0.05 -3.05 5.50 84.86 0.47 -2.59 16 20 N -0.94 -54.95 11.38 21.65 0.25 -54.70 16 21 Si 0.98 45.76 29.55 68.60 2.03 47.78 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 C 0.13 5.81 7.41 86.48 0.64 6.45 16 26 C -0.14 -2.09 5.57 30.68 0.17 -1.92 16 27 C 0.05 1.12 6.62 72.01 0.48 1.60 16 28 O -0.39 -9.66 9.94 -148.98 -1.48 -11.14 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.51 8.03 -2.38 -0.02 1.49 16 36 H 0.41 8.43 7.99 -92.71 -0.74 7.69 16 37 H 0.06 2.47 7.24 -2.39 -0.02 2.45 16 38 H 0.05 2.29 8.02 -2.38 -0.02 2.27 16 39 H 0.05 1.44 7.62 -2.39 -0.02 1.42 16 40 H 0.07 1.60 7.53 -2.39 -0.02 1.59 16 41 H 0.40 7.06 9.12 -74.06 -0.68 6.39 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 2.91 6.60 -2.39 -0.02 2.90 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.03 1.62 8.10 -2.39 -0.02 1.60 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.09 1.15 7.42 -2.39 -0.02 1.13 16 48 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.02 0.59 7.38 -2.39 -0.02 0.57 16 50 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -73.84 388.09 -0.75 -74.59 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.48 Total: 27.05 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.42 Total: 12.38 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -4.16 Total: -111.01 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -3.55 Total: -50.80 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -73.84 -0.75 -74.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755337693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.338 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds