Wall clock time and date at job start Tue Mar 31 2020 14:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47198 * 2 1 4 4 N 1.46500 * 109.46844 * 179.97438 * 3 2 1 5 5 C 1.34785 * 119.99541 * 179.97438 * 4 3 2 6 6 O 1.21504 * 119.99877 * 359.97438 * 5 4 3 7 7 O 1.34635 * 119.99665 * 180.02562 * 5 4 3 8 8 C 1.45199 * 116.99935 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47306 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.70274 * 177.27019 * 9 8 7 11 11 C 1.52759 * 109.51122 * 57.15306 * 9 8 7 12 12 C 1.53037 * 109.38622 * 185.70814 * 11 9 8 13 13 C 1.53040 * 109.54024 * 61.23480 * 12 11 9 14 14 C 1.53188 * 109.31386 * 298.63837 * 13 12 11 15 15 N 1.46923 * 109.58691 * 297.62555 * 9 8 7 16 16 C 1.34780 * 120.63216 * 353.41625 * 15 9 8 17 17 O 1.21276 * 119.99693 * 354.02856 * 16 15 9 18 18 C 1.50692 * 120.00098 * 174.02494 * 16 15 9 19 19 C 1.53002 * 109.47226 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47551 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99894 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00212 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00053 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00006 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46867 * 269.99931 * 24 22 20 26 26 H 1.48496 * 109.46975 * 30.00303 * 24 22 20 27 27 H 1.48501 * 109.47009 * 149.99917 * 24 22 20 28 28 H 1.09007 * 109.46981 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47147 * 300.00408 * 1 2 3 30 30 H 1.08998 * 109.46969 * 60.00577 * 1 2 3 31 31 H 1.08996 * 109.47518 * 239.99201 * 2 1 3 32 32 H 1.09011 * 109.46610 * 119.99992 * 2 1 3 33 33 H 1.09002 * 109.47035 * 59.99685 * 3 2 1 34 34 H 1.08998 * 109.46690 * 299.99595 * 3 2 1 35 35 H 0.96996 * 120.00530 * 359.97438 * 4 3 2 36 36 H 1.09004 * 109.47169 * 59.99693 * 8 7 5 37 37 H 1.09001 * 109.46814 * 299.99806 * 8 7 5 38 38 H 1.09001 * 109.56578 * 65.67357 * 11 9 8 39 39 H 1.08997 * 109.38598 * 305.63396 * 11 9 8 40 40 H 1.09009 * 109.45772 * 301.21834 * 12 11 9 41 41 H 1.09001 * 109.45142 * 181.25654 * 12 11 9 42 42 H 1.08998 * 109.49729 * 178.68134 * 13 12 11 43 43 H 1.09009 * 109.51889 * 58.60561 * 13 12 11 44 44 H 1.08996 * 109.58547 * 294.84349 * 14 13 12 45 45 H 1.09007 * 109.58667 * 174.41986 * 14 13 12 46 46 H 1.08994 * 109.47574 * 60.00009 * 18 16 15 47 47 H 1.09004 * 109.47065 * 300.00121 * 18 16 15 48 48 H 1.09002 * 109.46955 * 59.99655 * 19 18 16 49 49 H 1.09004 * 109.46910 * 299.99864 * 19 18 16 50 50 H 0.96996 * 120.00064 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5714 3.6619 -0.0011 7 8 5.5253 2.6096 0.0003 8 6 6.1845 3.9033 0.0004 9 6 7.7012 3.7029 0.0011 10 1 8.1999 4.6709 -0.0477 11 6 8.1052 2.8616 -1.2083 12 6 9.6000 2.5429 -1.1290 13 6 9.8846 1.7359 0.1398 14 6 9.5021 2.5694 1.3669 15 7 8.1049 3.0022 1.2277 16 6 7.2093 2.7562 2.2045 17 8 6.0864 3.2073 2.1251 18 6 7.6033 1.9206 3.3950 19 6 6.4119 1.7950 4.3467 20 6 6.8056 0.9588 5.5370 21 1 7.8055 0.5567 5.6074 22 6 5.8894 0.7071 6.5360 23 7 6.2329 -0.0231 7.5746 24 14 4.1598 1.4020 6.4139 25 1 4.1180 2.7411 7.0545 26 1 3.7754 1.5246 4.9848 27 1 3.2110 0.4926 7.1053 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.9900 0.6024 0.0013 36 1 5.8916 4.4603 0.8904 37 1 5.8917 4.4604 -0.8896 38 1 7.8997 3.4163 -2.1239 39 1 7.5349 1.9328 -1.2098 40 1 10.1686 3.4726 -1.1032 41 1 9.8940 1.9616 -2.0028 42 1 10.9454 1.4893 0.1838 43 1 9.2978 0.8174 0.1266 44 1 10.1506 3.4430 1.4317 45 1 9.6093 1.9645 2.2674 46 1 8.4348 2.3969 3.9141 47 1 7.9053 0.9286 3.0587 48 1 5.5806 1.3184 3.8272 49 1 6.1095 2.7868 4.6830 50 1 5.5882 -0.2005 8.2773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495894344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:46 Heat of formation + Delta-G solvation = -123.021344 kcal Electronic energy + Delta-G solvation = -29781.724156 eV Core-core repulsion = 25808.964911 eV Total energy + Delta-G solvation = -3972.759245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.66311 -39.63684 -37.29197 -36.76241 -35.33530 -33.64101 -32.81497 -32.73575 -32.11310 -30.95901 -27.52130 -26.45456 -25.76085 -24.46167 -22.54352 -21.84560 -21.32150 -21.14942 -20.13608 -18.62022 -18.39161 -17.28135 -16.57636 -16.49734 -15.88719 -15.73666 -15.27672 -15.15089 -14.82811 -14.58426 -14.24086 -14.00455 -13.94476 -13.53288 -13.33509 -13.16493 -13.03426 -12.82884 -12.52394 -12.33044 -12.20998 -12.19115 -11.81568 -11.45299 -11.37491 -11.29942 -11.08528 -11.06113 -10.97015 -10.82018 -10.67626 -10.36964 -10.25616 -10.10324 -9.94046 -9.75260 -9.17319 -9.07542 -8.58259 -8.50767 -8.40545 -6.03052 -4.01381 2.43608 3.09122 3.19154 3.25110 3.37754 3.44384 3.56140 4.31572 4.51069 4.57969 4.62840 4.67354 4.73123 4.81481 4.93834 5.05481 5.08925 5.19307 5.30170 5.32769 5.36225 5.44170 5.46440 5.48715 5.55442 5.62591 5.63194 5.71784 5.81228 5.82452 5.87503 5.96620 5.97154 5.99277 6.03700 6.09726 6.15475 6.23803 6.45049 6.65637 6.71553 6.78324 7.38403 7.45234 7.62147 7.67129 7.81066 8.50562 8.65720 8.70206 9.00211 9.60520 11.09806 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.006678 B = 0.005873 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4191.582820 B = 4766.760242 C = 8096.024805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.138 3.862 4 N -0.716 5.716 5 C 0.659 3.341 6 O -0.580 6.580 7 O -0.351 6.351 8 C 0.087 3.913 9 C 0.150 3.850 10 H 0.088 0.912 11 C -0.132 4.132 12 C -0.117 4.117 13 C -0.136 4.136 14 C 0.109 3.891 15 N -0.619 5.619 16 C 0.518 3.482 17 O -0.525 6.525 18 C -0.120 4.120 19 C 0.005 3.995 20 C -0.523 4.523 21 H 0.072 0.928 22 C 0.070 3.930 23 N -0.904 5.904 24 Si 0.876 3.124 25 H -0.277 1.277 26 H -0.262 1.262 27 H -0.289 1.289 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.404 0.596 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.022 0.978 49 H 0.017 0.983 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 2.423 -21.386 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.016 3.984 4 N -0.375 5.375 5 C 0.413 3.587 6 O -0.469 6.469 7 O -0.264 6.264 8 C 0.013 3.987 9 C 0.046 3.954 10 H 0.106 0.894 11 C -0.170 4.170 12 C -0.155 4.155 13 C -0.175 4.175 14 C -0.014 4.014 15 N -0.355 5.355 16 C 0.309 3.691 17 O -0.401 6.401 18 C -0.159 4.159 19 C -0.033 4.033 20 C -0.561 4.561 21 H 0.090 0.910 22 C -0.131 4.131 23 N -0.543 5.543 24 Si 0.703 3.297 25 H -0.203 1.203 26 H -0.186 1.186 27 H -0.215 1.215 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.040 0.960 49 H 0.036 0.964 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.233 3.177 -21.241 21.513 hybrid contribution -0.514 -0.042 0.075 0.521 sum 0.720 3.135 -21.166 21.409 Atomic orbital electron populations 1.21664 0.94397 1.02195 1.02336 1.21756 0.96975 0.95676 1.03136 1.21331 0.77242 0.97325 1.02529 1.44561 1.06851 1.06739 1.79374 1.17912 0.81202 0.84135 0.75454 1.90931 1.69229 1.30823 1.55962 1.86139 1.18402 1.35675 1.86224 1.23218 0.89107 0.83135 1.03249 1.21238 0.93042 0.95834 0.85275 0.89409 1.21888 0.96635 1.01448 0.97025 1.21498 0.95916 1.00192 0.97887 1.21931 1.01617 0.99238 0.94676 1.21726 0.81729 0.98677 0.99314 1.48225 1.10241 1.59320 1.17750 1.21431 0.84259 0.79766 0.83610 1.90593 1.21136 1.50800 1.77576 1.21681 1.02454 0.98521 0.93285 1.19339 0.92827 0.97260 0.93900 1.21110 1.00090 1.31722 1.03155 0.91002 1.24950 0.98577 0.94578 0.95008 1.69913 1.35428 1.39068 1.09894 0.86817 0.84747 0.79000 0.79095 1.20285 1.18617 1.21492 0.92081 0.92177 0.92447 0.91242 0.90769 0.91285 0.91559 0.76154 0.87052 0.92734 0.91139 0.90553 0.91942 0.91792 0.90834 0.91217 0.91648 0.88818 0.89942 0.89806 0.96013 0.96437 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.14 -1.30 6.05 -26.73 -0.16 -1.46 16 3 C 0.14 1.73 5.67 -4.04 -0.02 1.71 16 4 N -0.72 -10.42 5.56 -65.28 -0.36 -10.78 16 5 C 0.66 11.89 8.33 54.06 0.45 12.34 16 6 O -0.58 -12.11 16.13 -19.27 -0.31 -12.42 16 7 O -0.35 -5.94 7.34 -48.37 -0.35 -6.29 16 8 C 0.09 1.33 4.19 37.15 0.16 1.49 16 9 C 0.15 1.81 3.27 -67.83 -0.22 1.59 16 10 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.13 -1.30 5.26 -26.84 -0.14 -1.44 16 12 C -0.12 -0.95 5.89 -26.69 -0.16 -1.10 16 13 C -0.14 -1.20 6.08 -26.61 -0.16 -1.36 16 14 C 0.11 1.14 6.35 -3.71 -0.02 1.12 16 15 N -0.62 -8.50 2.98 -165.48 -0.49 -9.00 16 16 C 0.52 9.41 7.16 -10.99 -0.08 9.33 16 17 O -0.52 -11.23 10.35 -18.69 -0.19 -11.42 16 18 C -0.12 -2.33 3.99 -27.89 -0.11 -2.44 16 19 C 0.00 0.12 3.33 -27.88 -0.09 0.02 16 20 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 21 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 24 Si 0.88 22.90 27.47 -169.99 -4.67 18.23 16 25 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.26 -6.87 6.54 56.52 0.37 -6.50 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.40 5.06 8.58 -40.82 -0.35 4.71 16 36 H 0.11 2.07 5.88 -52.29 -0.31 1.76 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.89 7.42 -51.93 -0.39 0.50 16 40 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 46 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 47 H 0.08 1.53 7.92 -51.93 -0.41 1.12 16 48 H 0.02 0.57 7.16 -51.93 -0.37 0.20 16 49 H 0.02 0.46 7.53 -51.93 -0.39 0.06 16 50 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -36.12 391.71 -9.19 -45.30 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.85 Total: 2.07 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.63 Total: 5.67 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.08 Total: -47.04 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.86 Total: -30.14 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.12 -9.19 -45.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495894344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.717 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds