Wall clock time and date at job start Tue Mar 31 2020 14:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47198 * 2 1 4 4 N 1.46500 * 109.46844 * 179.97438 * 3 2 1 5 5 C 1.34785 * 119.99541 * 179.97438 * 4 3 2 6 6 O 1.21504 * 119.99877 * 359.97438 * 5 4 3 7 7 O 1.34635 * 119.99665 * 180.02562 * 5 4 3 8 8 C 1.45199 * 116.99935 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47306 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.70274 * 177.27019 * 9 8 7 11 11 C 1.52759 * 109.51122 * 57.15306 * 9 8 7 12 12 C 1.53037 * 109.38622 * 185.70814 * 11 9 8 13 13 C 1.53040 * 109.54024 * 61.23480 * 12 11 9 14 14 C 1.53188 * 109.31386 * 298.63837 * 13 12 11 15 15 N 1.46923 * 109.58691 * 297.62555 * 9 8 7 16 16 C 1.34780 * 120.63216 * 353.41625 * 15 9 8 17 17 O 1.21276 * 119.99693 * 354.02856 * 16 15 9 18 18 C 1.50692 * 120.00098 * 174.02494 * 16 15 9 19 19 C 1.53002 * 109.47226 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47551 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99894 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00212 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00053 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00006 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46867 * 269.99931 * 24 22 20 26 26 H 1.48496 * 109.46975 * 30.00303 * 24 22 20 27 27 H 1.48501 * 109.47009 * 149.99917 * 24 22 20 28 28 H 1.09007 * 109.46981 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47147 * 300.00408 * 1 2 3 30 30 H 1.08998 * 109.46969 * 60.00577 * 1 2 3 31 31 H 1.08996 * 109.47518 * 239.99201 * 2 1 3 32 32 H 1.09011 * 109.46610 * 119.99992 * 2 1 3 33 33 H 1.09002 * 109.47035 * 59.99685 * 3 2 1 34 34 H 1.08998 * 109.46690 * 299.99595 * 3 2 1 35 35 H 0.96996 * 120.00530 * 359.97438 * 4 3 2 36 36 H 1.09004 * 109.47169 * 59.99693 * 8 7 5 37 37 H 1.09001 * 109.46814 * 299.99806 * 8 7 5 38 38 H 1.09001 * 109.56578 * 65.67357 * 11 9 8 39 39 H 1.08997 * 109.38598 * 305.63396 * 11 9 8 40 40 H 1.09009 * 109.45772 * 301.21834 * 12 11 9 41 41 H 1.09001 * 109.45142 * 181.25654 * 12 11 9 42 42 H 1.08998 * 109.49729 * 178.68134 * 13 12 11 43 43 H 1.09009 * 109.51889 * 58.60561 * 13 12 11 44 44 H 1.08996 * 109.58547 * 294.84349 * 14 13 12 45 45 H 1.09007 * 109.58667 * 174.41986 * 14 13 12 46 46 H 1.08994 * 109.47574 * 60.00009 * 18 16 15 47 47 H 1.09004 * 109.47065 * 300.00121 * 18 16 15 48 48 H 1.09002 * 109.46955 * 59.99655 * 19 18 16 49 49 H 1.09004 * 109.46910 * 299.99864 * 19 18 16 50 50 H 0.96996 * 120.00064 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5714 3.6619 -0.0011 7 8 5.5253 2.6096 0.0003 8 6 6.1845 3.9033 0.0004 9 6 7.7012 3.7029 0.0011 10 1 8.1999 4.6709 -0.0477 11 6 8.1052 2.8616 -1.2083 12 6 9.6000 2.5429 -1.1290 13 6 9.8846 1.7359 0.1398 14 6 9.5021 2.5694 1.3669 15 7 8.1049 3.0022 1.2277 16 6 7.2093 2.7562 2.2045 17 8 6.0864 3.2073 2.1251 18 6 7.6033 1.9206 3.3950 19 6 6.4119 1.7950 4.3467 20 6 6.8056 0.9588 5.5370 21 1 7.8055 0.5567 5.6074 22 6 5.8894 0.7071 6.5360 23 7 6.2329 -0.0231 7.5746 24 14 4.1598 1.4020 6.4139 25 1 4.1180 2.7411 7.0545 26 1 3.7754 1.5246 4.9848 27 1 3.2110 0.4926 7.1053 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.9900 0.6024 0.0013 36 1 5.8916 4.4603 0.8904 37 1 5.8917 4.4604 -0.8896 38 1 7.8997 3.4163 -2.1239 39 1 7.5349 1.9328 -1.2098 40 1 10.1686 3.4726 -1.1032 41 1 9.8940 1.9616 -2.0028 42 1 10.9454 1.4893 0.1838 43 1 9.2978 0.8174 0.1266 44 1 10.1506 3.4430 1.4317 45 1 9.6093 1.9645 2.2674 46 1 8.4348 2.3969 3.9141 47 1 7.9053 0.9286 3.0587 48 1 5.5806 1.3184 3.8272 49 1 6.1095 2.7868 4.6830 50 1 5.5882 -0.2005 8.2773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495894344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:45 Heat of formation + Delta-G solvation = -147.226416 kcal Electronic energy + Delta-G solvation = -29782.773767 eV Core-core repulsion = 25808.964911 eV Total energy + Delta-G solvation = -3973.808856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.90570 -40.93756 -38.48311 -37.88514 -36.58981 -35.61619 -34.09917 -33.72578 -33.31299 -32.60086 -28.67753 -27.93776 -26.99120 -25.42979 -23.87805 -22.85759 -22.59316 -22.30078 -21.43950 -19.94283 -19.62453 -19.04692 -18.14728 -17.80108 -17.16772 -16.83847 -16.58567 -16.29215 -16.12901 -15.99764 -15.43177 -15.15244 -14.97620 -14.90675 -14.64517 -14.51398 -14.25125 -13.99873 -13.85783 -13.65023 -13.38252 -13.35456 -12.98163 -12.94280 -12.75993 -12.29070 -12.10571 -12.09850 -12.00165 -11.87196 -11.83648 -11.81792 -11.72685 -11.67044 -11.49801 -11.49603 -11.31259 -10.80868 -10.30911 -9.95784 -9.52155 -8.34327 -6.36002 1.23388 1.27332 1.29818 1.45001 1.73254 1.86028 2.04051 2.30730 3.01554 3.20867 3.57730 3.78303 3.81708 3.93303 3.99320 4.05100 4.18153 4.22590 4.27635 4.32759 4.34404 4.37372 4.45462 4.58510 4.59936 4.64554 4.73643 4.77044 4.80476 4.95677 4.98129 5.01483 5.08846 5.14486 5.18112 5.19736 5.23909 5.26650 5.32187 5.38428 5.42250 5.50011 5.53049 5.58953 5.71200 6.21923 6.37229 6.45572 6.70123 7.29227 7.32468 7.35479 8.81462 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.006678 B = 0.005873 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4191.582820 B = 4766.760242 C = 8096.024805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.135 3.865 4 N -0.706 5.706 5 C 0.649 3.351 6 O -0.617 6.617 7 O -0.352 6.352 8 C 0.085 3.915 9 C 0.150 3.850 10 H 0.117 0.883 11 C -0.125 4.125 12 C -0.112 4.112 13 C -0.132 4.132 14 C 0.099 3.901 15 N -0.609 5.609 16 C 0.517 3.483 17 O -0.565 6.565 18 C -0.112 4.112 19 C 0.013 3.987 20 C -0.525 4.525 21 H 0.052 0.948 22 C 0.020 3.980 23 N -0.941 5.941 24 Si 0.933 3.067 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.275 1.275 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.004 0.996 49 H 0.002 0.998 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 2.404 -23.640 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.013 3.987 4 N -0.366 5.366 5 C 0.403 3.597 6 O -0.509 6.509 7 O -0.264 6.264 8 C 0.010 3.990 9 C 0.047 3.953 10 H 0.134 0.866 11 C -0.163 4.163 12 C -0.149 4.149 13 C -0.170 4.170 14 C -0.022 4.022 15 N -0.343 5.343 16 C 0.307 3.693 17 O -0.445 6.445 18 C -0.151 4.151 19 C -0.025 4.025 20 C -0.563 4.563 21 H 0.070 0.930 22 C -0.178 4.178 23 N -0.581 5.581 24 Si 0.759 3.241 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.200 1.200 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.022 0.978 49 H 0.020 0.980 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.500 3.125 -23.521 23.859 hybrid contribution -0.799 -0.039 0.759 1.103 sum 1.702 3.087 -22.762 23.033 Atomic orbital electron populations 1.21677 0.93258 1.03149 1.02406 1.21724 0.97812 0.93329 1.03729 1.21497 0.76105 0.99451 1.01637 1.44693 1.07658 1.06228 1.78027 1.18292 0.81590 0.84551 0.75307 1.90889 1.69913 1.32274 1.57864 1.86149 1.17822 1.36544 1.85907 1.23286 0.91173 0.82448 1.02054 1.21491 0.90897 0.97568 0.85309 0.86564 1.21852 0.97897 1.00203 0.96396 1.21497 0.94349 1.01141 0.97939 1.21919 1.02783 0.98255 0.94080 1.22046 0.79907 1.00044 1.00204 1.48187 1.10874 1.58165 1.17092 1.21072 0.84340 0.79726 0.84179 1.90622 1.22870 1.52440 1.78525 1.21475 1.00358 0.99954 0.93344 1.19141 0.94525 0.95226 0.93626 1.21405 0.99206 1.31454 1.04193 0.92953 1.25685 1.02147 0.95053 0.94905 1.70008 1.36868 1.40479 1.10784 0.85916 0.80886 0.78710 0.78624 1.19777 1.19357 1.20025 0.90635 0.93073 0.91499 0.89252 0.91494 0.93680 0.90966 0.75011 0.90698 0.91444 0.89202 0.92592 0.90114 0.90272 0.88410 0.92801 0.89098 0.89469 0.88479 0.88712 0.97806 0.97979 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.13 -2.30 6.05 30.59 0.19 -2.11 16 3 C 0.14 3.42 5.67 86.38 0.49 3.91 16 4 N -0.71 -20.84 5.56 -590.84 -3.29 -24.12 16 5 C 0.65 24.02 8.33 129.79 1.08 25.10 16 6 O -0.62 -26.71 16.13 19.83 0.32 -26.39 16 7 O -0.35 -12.03 7.34 -47.73 -0.35 -12.38 16 8 C 0.08 2.58 4.19 71.98 0.30 2.88 16 9 C 0.15 3.32 3.27 44.83 0.15 3.46 16 10 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 11 C -0.13 -2.10 5.26 30.53 0.16 -1.94 16 12 C -0.11 -1.33 5.89 30.62 0.18 -1.15 16 13 C -0.13 -1.86 6.08 30.67 0.19 -1.68 16 14 C 0.10 1.81 6.35 86.36 0.55 2.36 16 15 N -0.61 -15.72 2.98 -795.85 -2.37 -18.09 16 16 C 0.52 18.69 7.16 87.65 0.63 19.32 16 17 O -0.56 -24.80 10.35 20.17 0.21 -24.59 16 18 C -0.11 -4.33 3.99 29.85 0.12 -4.21 16 19 C 0.01 0.65 3.33 29.85 0.10 0.75 16 20 C -0.52 -30.50 9.66 25.60 0.25 -30.25 16 21 H 0.05 3.18 7.99 -2.91 -0.02 3.16 16 22 C 0.02 1.20 5.47 84.65 0.46 1.67 16 23 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 24 Si 0.93 48.04 27.47 68.60 1.88 49.93 16 25 H -0.27 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.27 -14.05 6.54 99.48 0.65 -13.40 16 27 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 28 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.41 10.33 8.58 -92.71 -0.80 9.53 16 36 H 0.07 2.88 5.88 -8.15 -0.05 2.83 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.19 7.42 -2.39 -0.02 1.17 16 40 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.09 1.72 5.93 -2.38 -0.01 1.70 16 46 H 0.10 3.44 7.71 -2.39 -0.02 3.43 16 47 H 0.09 3.43 7.92 -2.38 -0.02 3.41 16 48 H 0.00 0.19 7.16 -2.39 -0.02 0.18 16 49 H 0.00 0.10 7.53 -2.38 -0.02 0.08 16 50 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -81.02 391.71 2.29 -78.73 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.03 Total: 19.04 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 5.55 Total: 16.60 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -5.35 Total: -100.94 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: 0.18 Total: -63.36 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.88 Total: 49.93 kcal Total: -81.02 2.29 -78.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495894344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.498 kcal (2) G-P(sol) polarization free energy of solvation -81.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds