Wall clock time and date at job start Tue Mar 31 2020 14:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47030 * 2 1 4 4 N 1.46495 * 109.46966 * 120.00248 * 2 1 3 5 5 C 1.34777 * 119.99994 * 154.99860 * 4 2 1 6 6 O 1.21505 * 120.00150 * 359.97438 * 5 4 2 7 7 O 1.34643 * 119.99903 * 179.97438 * 5 4 2 8 8 C 1.45197 * 116.99947 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47275 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.58531 * 177.31284 * 9 8 7 11 11 C 1.53190 * 109.58298 * 56.88374 * 9 8 7 12 12 C 1.53044 * 109.31154 * 185.57641 * 11 9 8 13 13 C 1.53038 * 109.53690 * 61.36863 * 12 11 9 14 14 C 1.53631 * 109.23872 * 298.50981 * 13 12 11 15 15 N 1.46923 * 108.54270 * 54.86032 * 14 13 12 16 16 C 1.34776 * 120.63400 * 126.37015 * 15 14 13 17 17 O 1.21277 * 120.00201 * 174.03304 * 16 15 14 18 18 C 1.50703 * 119.99458 * 354.02807 * 16 15 14 19 19 C 1.53006 * 109.46828 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47212 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99385 * 359.97438 * 20 19 18 22 22 C 1.37869 * 119.99906 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00438 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99849 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47201 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47434 * 300.00195 * 24 22 20 27 27 H 1.48501 * 109.46862 * 60.00146 * 24 22 20 28 28 H 1.08992 * 109.46874 * 300.00195 * 1 2 3 29 29 H 1.09003 * 109.46584 * 59.99631 * 1 2 3 30 30 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46675 * 240.00244 * 2 1 3 32 32 H 1.09002 * 109.46925 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47529 * 299.99692 * 3 2 1 34 34 H 1.09003 * 109.47192 * 60.00561 * 3 2 1 35 35 H 0.97001 * 120.00397 * 335.00097 * 4 2 1 36 36 H 1.09007 * 109.46631 * 60.00614 * 8 7 5 37 37 H 1.08995 * 109.47581 * 300.01027 * 8 7 5 38 38 H 1.08998 * 109.50050 * 305.53147 * 11 9 8 39 39 H 1.09005 * 109.49745 * 65.59877 * 11 9 8 40 40 H 1.09000 * 109.46317 * 181.38809 * 12 11 9 41 41 H 1.09000 * 109.46270 * 301.35944 * 12 11 9 42 42 H 1.09002 * 109.50001 * 58.58644 * 13 12 11 43 43 H 1.09004 * 109.49739 * 178.65072 * 13 12 11 44 44 H 1.08994 * 109.74059 * 295.11835 * 14 13 12 45 45 H 1.09008 * 109.65936 * 174.54889 * 14 13 12 46 46 H 1.08997 * 109.47188 * 60.00817 * 18 16 15 47 47 H 1.08996 * 109.47321 * 299.99891 * 18 16 15 48 48 H 1.08994 * 109.47581 * 59.99770 * 19 18 16 49 49 H 1.09000 * 109.47117 * 299.99943 * 19 18 16 50 50 H 0.96997 * 119.99470 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9368 -1.1994 0.2005 7 8 3.6893 -1.8936 2.2938 8 6 5.0142 -2.4829 2.2200 9 6 5.3485 -3.1549 3.5533 10 1 6.3227 -3.6389 3.4843 11 6 4.2763 -4.1971 3.8861 12 6 4.5392 -4.7657 5.2824 13 6 4.4570 -3.6408 6.3169 14 6 5.5369 -2.5918 6.0110 15 7 5.3744 -2.1456 4.6207 16 6 5.2569 -0.8349 4.3294 17 8 5.2321 -0.4706 3.1729 18 6 5.1564 0.1778 5.4408 19 6 5.0322 1.5807 4.8428 20 6 4.9322 2.5936 5.9542 21 1 4.9546 2.2690 6.9840 22 6 4.8122 3.9343 5.6562 23 7 4.7845 4.3294 4.4021 24 14 4.6877 5.1897 7.0339 25 1 4.5685 6.5514 6.4534 26 1 3.4907 4.8979 7.8628 27 1 5.9056 5.1180 7.8805 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.4622 -0.7388 1.9894 36 1 5.7473 -1.7037 2.0116 37 1 5.0374 -3.2261 1.4230 38 1 3.2929 -3.7274 3.8637 39 1 4.3115 -5.0025 3.1523 40 1 3.7920 -5.5254 5.5119 41 1 5.5327 -5.2132 5.3112 42 1 3.4719 -3.1763 6.2717 43 1 4.6206 -4.0505 7.3136 44 1 6.5254 -3.0326 6.1401 45 1 5.4230 -1.7414 6.6834 46 1 6.0504 0.1253 6.0622 47 1 4.2778 -0.0364 6.0493 48 1 4.1381 1.6330 4.2216 49 1 5.9105 1.7952 4.2341 50 1 4.8488 3.6774 3.6868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496625936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:52 Heat of formation + Delta-G solvation = -126.607529 kcal Electronic energy + Delta-G solvation = -30095.401980 eV Core-core repulsion = 26122.487226 eV Total energy + Delta-G solvation = -3972.914754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.62202 -39.64374 -37.25253 -36.91679 -35.23552 -33.86055 -32.82054 -32.38282 -31.14390 -30.47432 -27.18111 -27.17446 -25.28685 -24.43545 -22.86429 -22.12171 -21.42642 -20.63979 -20.34714 -18.59058 -18.44775 -17.19444 -16.59215 -16.39051 -15.73546 -15.60902 -15.15541 -14.79355 -14.62184 -14.37893 -14.10464 -13.90698 -13.69818 -13.55035 -13.40469 -13.22217 -12.80525 -12.50165 -12.35995 -12.15212 -12.07947 -12.04319 -11.77977 -11.51386 -11.37827 -11.33658 -11.07460 -10.92872 -10.85174 -10.80118 -10.67712 -10.30032 -10.16054 -10.11946 -10.07684 -9.84509 -9.02149 -8.63811 -8.46309 -8.37662 -8.26518 -6.30075 -4.00149 2.49745 3.13172 3.22300 3.31843 3.45013 3.47387 3.66276 4.35503 4.56913 4.60673 4.63031 4.73295 4.84574 4.94363 5.04164 5.08419 5.19195 5.23369 5.32482 5.38803 5.47387 5.51326 5.56075 5.61053 5.63157 5.71583 5.72653 5.81631 5.84370 5.87272 5.88522 5.97154 6.02947 6.11500 6.12676 6.19451 6.25137 6.46448 6.63072 6.69783 6.77851 6.83841 7.54568 7.60054 7.70853 7.71886 8.21938 8.51501 8.72156 8.74967 8.94078 9.73396 11.10534 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.007743 B = 0.005137 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.265453 B = 5448.927255 C = 8278.468510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.157 3.843 3 C -0.168 4.168 4 N -0.710 5.710 5 C 0.661 3.339 6 O -0.580 6.580 7 O -0.352 6.352 8 C 0.088 3.912 9 C 0.149 3.851 10 H 0.088 0.912 11 C -0.131 4.131 12 C -0.117 4.117 13 C -0.136 4.136 14 C 0.109 3.891 15 N -0.620 5.620 16 C 0.518 3.482 17 O -0.521 6.521 18 C -0.120 4.120 19 C 0.029 3.971 20 C -0.608 4.608 21 H 0.047 0.953 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 1.068 2.932 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.288 1.288 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.402 0.598 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.013 0.987 49 H 0.012 0.988 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 -18.947 -1.195 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 C -0.226 4.226 4 N -0.370 5.370 5 C 0.414 3.586 6 O -0.469 6.469 7 O -0.265 6.265 8 C 0.013 3.987 9 C 0.046 3.954 10 H 0.105 0.895 11 C -0.169 4.169 12 C -0.155 4.155 13 C -0.174 4.174 14 C -0.014 4.014 15 N -0.357 5.357 16 C 0.308 3.692 17 O -0.396 6.396 18 C -0.160 4.160 19 C -0.009 4.009 20 C -0.646 4.646 21 H 0.066 0.934 22 C -0.189 4.189 23 N -0.546 5.546 24 Si 0.897 3.103 25 H -0.208 1.208 26 H -0.215 1.215 27 H -0.215 1.215 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.236 0.764 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.031 0.969 49 H 0.031 0.969 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.077 -17.114 -1.991 17.962 hybrid contribution 0.007 -1.808 0.221 1.821 sum -5.070 -18.922 -1.769 19.669 Atomic orbital electron populations 1.22086 0.93995 1.02440 1.03214 1.20874 0.93542 0.93049 0.87147 1.22232 1.02890 0.95305 1.02199 1.44713 1.15953 1.58551 1.17763 1.17933 0.81972 0.77018 0.81652 1.90923 1.56929 1.64405 1.34672 1.86142 1.35366 1.66951 1.38077 1.23195 0.83535 0.96691 0.95229 1.21330 0.98624 0.88995 0.86470 0.89473 1.21954 1.00117 0.97777 0.97050 1.21497 1.01750 0.97578 0.94656 1.22001 1.00019 0.96475 0.98894 1.21794 0.98246 0.98628 0.82720 1.48237 1.74907 1.05835 1.06682 1.21439 0.74051 0.82060 0.91603 1.90601 1.48783 1.79057 1.21193 1.21733 1.02137 0.96153 0.95987 1.18973 0.97044 0.88685 0.96188 1.22019 1.55932 0.93600 0.93040 0.93421 1.25810 0.93940 0.98132 1.00971 1.70733 1.45919 1.38466 0.99452 0.83561 0.76377 0.76034 0.74338 1.20787 1.21524 1.21504 0.91739 0.90689 0.92111 0.89542 0.91601 0.91708 0.91962 0.76364 0.87124 0.92792 0.90557 0.91168 0.91798 0.91953 0.91255 0.90928 0.91699 0.89007 0.90454 0.90328 0.96914 0.96941 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.38 37.16 0.35 -1.15 16 2 C 0.16 2.08 3.18 -67.93 -0.22 1.87 16 3 C -0.17 -2.48 9.48 37.16 0.35 -2.13 16 4 N -0.71 -10.81 5.08 -58.73 -0.30 -11.11 16 5 C 0.66 12.29 8.30 54.06 0.45 12.74 16 6 O -0.58 -12.36 15.79 -19.28 -0.30 -12.67 16 7 O -0.35 -6.20 7.34 -48.40 -0.36 -6.56 16 8 C 0.09 1.41 4.19 37.16 0.16 1.56 16 9 C 0.15 1.90 3.29 -67.60 -0.22 1.68 16 10 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.13 -1.35 5.28 -26.61 -0.14 -1.49 16 12 C -0.12 -0.99 5.88 -26.69 -0.16 -1.15 16 13 C -0.14 -1.24 6.10 -26.38 -0.16 -1.40 16 14 C 0.11 1.21 6.38 -3.48 -0.02 1.19 16 15 N -0.62 -8.97 2.96 -164.96 -0.49 -9.45 16 16 C 0.52 9.93 7.17 -10.98 -0.08 9.85 16 17 O -0.52 -11.71 10.34 -18.70 -0.19 -11.90 16 18 C -0.12 -2.48 4.00 -27.88 -0.11 -2.59 16 19 C 0.03 0.77 3.57 -27.88 -0.10 0.67 16 20 C -0.61 -17.47 9.11 -34.44 -0.31 -17.78 16 21 H 0.05 1.31 7.74 -52.49 -0.41 0.90 16 22 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 23 N -0.91 -28.84 13.65 55.43 0.76 -28.08 16 24 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 5.40 8.71 -40.82 -0.36 5.04 16 36 H 0.11 2.15 5.88 -52.28 -0.31 1.84 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.93 7.44 -51.93 -0.39 0.54 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.06 5.93 -51.92 -0.31 0.75 16 46 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 47 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 48 H 0.01 0.37 7.97 -51.93 -0.41 -0.05 16 49 H 0.01 0.36 7.97 -51.93 -0.41 -0.05 16 50 H 0.27 8.81 7.22 -40.82 -0.29 8.51 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -36.25 393.21 -9.16 -45.41 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.80 Total: 5.79 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.31 Total: 2.23 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.03 Total: -48.64 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.85 Total: -31.13 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.25 -9.16 -45.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496625936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.198 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds