Wall clock time and date at job start Tue Mar 31 2020 14:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47030 * 2 1 4 4 N 1.46495 * 109.46966 * 120.00248 * 2 1 3 5 5 C 1.34777 * 119.99994 * 154.99860 * 4 2 1 6 6 O 1.21505 * 120.00150 * 359.97438 * 5 4 2 7 7 O 1.34643 * 119.99903 * 179.97438 * 5 4 2 8 8 C 1.45197 * 116.99947 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47275 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.58531 * 177.31284 * 9 8 7 11 11 C 1.53190 * 109.58298 * 56.88374 * 9 8 7 12 12 C 1.53044 * 109.31154 * 185.57641 * 11 9 8 13 13 C 1.53038 * 109.53690 * 61.36863 * 12 11 9 14 14 C 1.53631 * 109.23872 * 298.50981 * 13 12 11 15 15 N 1.46923 * 108.54270 * 54.86032 * 14 13 12 16 16 C 1.34776 * 120.63400 * 126.37015 * 15 14 13 17 17 O 1.21277 * 120.00201 * 174.03304 * 16 15 14 18 18 C 1.50703 * 119.99458 * 354.02807 * 16 15 14 19 19 C 1.53006 * 109.46828 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47212 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99385 * 359.97438 * 20 19 18 22 22 C 1.37869 * 119.99906 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00438 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99849 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47201 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47434 * 300.00195 * 24 22 20 27 27 H 1.48501 * 109.46862 * 60.00146 * 24 22 20 28 28 H 1.08992 * 109.46874 * 300.00195 * 1 2 3 29 29 H 1.09003 * 109.46584 * 59.99631 * 1 2 3 30 30 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46675 * 240.00244 * 2 1 3 32 32 H 1.09002 * 109.46925 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47529 * 299.99692 * 3 2 1 34 34 H 1.09003 * 109.47192 * 60.00561 * 3 2 1 35 35 H 0.97001 * 120.00397 * 335.00097 * 4 2 1 36 36 H 1.09007 * 109.46631 * 60.00614 * 8 7 5 37 37 H 1.08995 * 109.47581 * 300.01027 * 8 7 5 38 38 H 1.08998 * 109.50050 * 305.53147 * 11 9 8 39 39 H 1.09005 * 109.49745 * 65.59877 * 11 9 8 40 40 H 1.09000 * 109.46317 * 181.38809 * 12 11 9 41 41 H 1.09000 * 109.46270 * 301.35944 * 12 11 9 42 42 H 1.09002 * 109.50001 * 58.58644 * 13 12 11 43 43 H 1.09004 * 109.49739 * 178.65072 * 13 12 11 44 44 H 1.08994 * 109.74059 * 295.11835 * 14 13 12 45 45 H 1.09008 * 109.65936 * 174.54889 * 14 13 12 46 46 H 1.08997 * 109.47188 * 60.00817 * 18 16 15 47 47 H 1.08996 * 109.47321 * 299.99891 * 18 16 15 48 48 H 1.08994 * 109.47581 * 59.99770 * 19 18 16 49 49 H 1.09000 * 109.47117 * 299.99943 * 19 18 16 50 50 H 0.96997 * 119.99470 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9368 -1.1994 0.2005 7 8 3.6893 -1.8936 2.2938 8 6 5.0142 -2.4829 2.2200 9 6 5.3485 -3.1549 3.5533 10 1 6.3227 -3.6389 3.4843 11 6 4.2763 -4.1971 3.8861 12 6 4.5392 -4.7657 5.2824 13 6 4.4570 -3.6408 6.3169 14 6 5.5369 -2.5918 6.0110 15 7 5.3744 -2.1456 4.6207 16 6 5.2569 -0.8349 4.3294 17 8 5.2321 -0.4706 3.1729 18 6 5.1564 0.1778 5.4408 19 6 5.0322 1.5807 4.8428 20 6 4.9322 2.5936 5.9542 21 1 4.9546 2.2690 6.9840 22 6 4.8122 3.9343 5.6562 23 7 4.7845 4.3294 4.4021 24 14 4.6877 5.1897 7.0339 25 1 4.5685 6.5514 6.4534 26 1 3.4907 4.8979 7.8628 27 1 5.9056 5.1180 7.8805 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.4622 -0.7388 1.9894 36 1 5.7473 -1.7037 2.0116 37 1 5.0374 -3.2261 1.4230 38 1 3.2929 -3.7274 3.8637 39 1 4.3115 -5.0025 3.1523 40 1 3.7920 -5.5254 5.5119 41 1 5.5327 -5.2132 5.3112 42 1 3.4719 -3.1763 6.2717 43 1 4.6206 -4.0505 7.3136 44 1 6.5254 -3.0326 6.1401 45 1 5.4230 -1.7414 6.6834 46 1 6.0504 0.1253 6.0622 47 1 4.2778 -0.0364 6.0493 48 1 4.1381 1.6330 4.2216 49 1 5.9105 1.7952 4.2341 50 1 4.8488 3.6774 3.6868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496625936.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:51 Heat of formation + Delta-G solvation = -151.180702 kcal Electronic energy + Delta-G solvation = -30096.467553 eV Core-core repulsion = 26122.487226 eV Total energy + Delta-G solvation = -3973.980327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.95117 -41.02028 -38.55032 -38.10965 -36.64887 -35.97540 -34.07802 -33.51361 -32.51451 -32.10126 -28.36312 -28.20853 -27.19188 -25.55950 -24.35379 -23.66449 -22.58386 -21.86089 -21.60068 -19.93638 -19.74929 -19.04055 -18.13556 -17.90974 -17.04967 -16.94160 -16.55606 -16.09455 -15.63288 -15.60912 -15.46668 -15.24261 -15.15242 -14.94276 -14.64531 -14.40560 -14.06028 -13.95485 -13.79825 -13.56766 -13.47307 -13.27883 -13.16628 -12.80256 -12.67443 -12.42328 -12.32758 -12.12790 -12.07860 -12.04945 -11.93719 -11.84003 -11.75106 -11.68478 -11.53302 -11.44507 -10.77131 -10.56326 -10.34379 -10.02141 -9.56679 -8.70203 -6.42193 1.21121 1.52432 1.62622 1.67655 1.81038 1.85655 1.98452 2.58538 3.16231 3.16774 3.52768 3.73054 3.81836 3.89087 4.00558 4.01691 4.12838 4.17867 4.19108 4.27419 4.29661 4.31709 4.35855 4.55408 4.59701 4.63687 4.67907 4.72099 4.83367 4.87273 4.88900 4.94175 4.97790 5.10863 5.14905 5.19742 5.21717 5.22773 5.27329 5.35723 5.36336 5.49013 5.50686 5.66952 5.92573 6.14861 6.37095 6.40903 6.49749 7.28979 7.33908 7.44153 8.68688 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.007743 B = 0.005137 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.265453 B = 5448.927255 C = 8278.468510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 C -0.164 4.164 4 N -0.701 5.701 5 C 0.650 3.350 6 O -0.616 6.616 7 O -0.353 6.353 8 C 0.086 3.914 9 C 0.149 3.851 10 H 0.117 0.883 11 C -0.124 4.124 12 C -0.112 4.112 13 C -0.131 4.131 14 C 0.099 3.901 15 N -0.608 5.608 16 C 0.513 3.487 17 O -0.566 6.566 18 C -0.108 4.108 19 C 0.037 3.963 20 C -0.617 4.617 21 H 0.066 0.934 22 C -0.044 4.044 23 N -0.938 5.938 24 Si 1.123 2.877 25 H -0.288 1.288 26 H -0.263 1.263 27 H -0.264 1.264 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.018 0.982 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.094 0.906 48 H -0.026 1.026 49 H -0.028 1.028 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 -21.286 1.596 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.051 3.949 3 C -0.222 4.222 4 N -0.361 5.361 5 C 0.404 3.596 6 O -0.509 6.509 7 O -0.266 6.266 8 C 0.011 3.989 9 C 0.047 3.953 10 H 0.134 0.866 11 C -0.162 4.162 12 C -0.149 4.149 13 C -0.169 4.169 14 C -0.022 4.022 15 N -0.343 5.343 16 C 0.303 3.697 17 O -0.445 6.445 18 C -0.148 4.148 19 C 0.000 4.000 20 C -0.655 4.655 21 H 0.084 0.916 22 C -0.241 4.241 23 N -0.575 5.575 24 Si 0.943 3.057 25 H -0.214 1.214 26 H -0.187 1.187 27 H -0.189 1.189 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.113 0.887 48 H -0.008 1.008 49 H -0.010 1.010 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.986 -19.535 0.857 20.450 hybrid contribution 0.327 -1.130 -0.676 1.356 sum -5.660 -20.665 0.181 21.427 Atomic orbital electron populations 1.22030 0.90161 1.03836 1.04457 1.21090 0.96363 0.91353 0.86135 1.22216 0.99806 0.97061 1.03165 1.44875 1.14920 1.57527 1.18799 1.18326 0.82617 0.77199 0.81500 1.90879 1.58108 1.65905 1.35985 1.86146 1.36017 1.66841 1.37578 1.23251 0.81874 0.95736 0.98022 1.21600 1.01067 0.88611 0.84046 0.86567 1.21918 0.97736 0.97193 0.99350 1.21501 1.03449 0.97448 0.92503 1.21989 0.98212 0.95973 1.00707 1.22159 1.00601 0.99322 0.80156 1.48194 1.72810 1.04369 1.08930 1.21135 0.74533 0.83711 0.90334 1.90637 1.51115 1.80255 1.22515 1.21482 1.03726 0.93034 0.96515 1.18754 0.93348 0.92844 0.95087 1.22473 1.54728 0.94150 0.94103 0.91607 1.27656 0.92657 1.01429 1.02319 1.70904 1.48612 1.37758 1.00212 0.82893 0.78347 0.72822 0.71629 1.21367 1.18730 1.18883 0.91363 0.88509 0.90626 0.90256 0.96232 0.88688 0.92997 0.75348 0.91278 0.91398 0.92691 0.89160 0.90075 0.90032 0.92875 0.88155 0.89020 0.89505 0.88541 0.88739 1.00800 1.00974 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.38 71.98 0.68 -1.90 16 2 C 0.15 4.20 3.18 44.99 0.14 4.35 16 3 C -0.16 -5.19 9.48 71.98 0.68 -4.51 16 4 N -0.70 -22.52 5.08 -570.13 -2.90 -25.42 16 5 C 0.65 25.82 8.30 129.79 1.08 26.90 16 6 O -0.62 -28.31 15.79 19.83 0.31 -28.00 16 7 O -0.35 -13.09 7.34 -47.81 -0.35 -13.44 16 8 C 0.09 2.84 4.19 71.98 0.30 3.14 16 9 C 0.15 3.60 3.29 44.97 0.15 3.75 16 10 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 11 C -0.12 -2.24 5.28 30.67 0.16 -2.08 16 12 C -0.11 -1.40 5.88 30.62 0.18 -1.22 16 13 C -0.13 -1.91 6.10 30.82 0.19 -1.72 16 14 C 0.10 1.90 6.38 86.51 0.55 2.45 16 15 N -0.61 -16.99 2.96 -794.20 -2.35 -19.35 16 16 C 0.51 20.30 7.17 87.66 0.63 20.93 16 17 O -0.57 -27.39 10.34 20.18 0.21 -27.18 16 18 C -0.11 -4.52 4.00 29.85 0.12 -4.40 16 19 C 0.04 2.12 3.57 29.85 0.11 2.22 16 20 C -0.62 -36.03 9.11 25.60 0.23 -35.80 16 21 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 22 C -0.04 -2.64 5.46 84.65 0.46 -2.18 16 23 N -0.94 -62.09 13.65 21.44 0.29 -61.80 16 24 Si 1.12 50.76 29.90 68.60 2.05 52.81 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 27 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 2.31 7.58 -2.39 -0.02 2.29 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.41 11.47 8.71 -92.71 -0.81 10.66 16 36 H 0.07 2.91 5.88 -7.99 -0.05 2.86 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.25 7.44 -2.39 -0.02 1.24 16 39 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 1.77 5.93 -2.38 -0.01 1.76 16 46 H 0.10 3.64 7.70 -2.39 -0.02 3.62 16 47 H 0.09 3.62 7.93 -2.39 -0.02 3.60 16 48 H -0.03 -1.68 7.97 -2.39 -0.02 -1.70 16 49 H -0.03 -1.80 7.97 -2.39 -0.02 -1.82 16 50 H 0.25 17.31 7.22 -92.71 -0.67 16.64 16 Total: -1.00 -86.93 393.21 3.10 -83.83 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.18 Total: 28.61 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 5.66 Total: 9.94 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.96 Total: -106.57 kcal Atomic # 8 Polarization: -68.79 SS G_CDS: 0.17 Total: -68.62 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -86.93 3.10 -83.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496625936.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.355 kcal (2) G-P(sol) polarization free energy of solvation -86.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds