Wall clock time and date at job start Tue Mar 31 2020 15:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47599 * 2 1 4 4 N 1.46502 * 109.47281 * 120.00770 * 2 1 3 5 5 C 1.36937 * 119.99692 * 274.99798 * 4 2 1 6 6 H 1.08003 * 120.00301 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99918 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00326 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99986 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46792 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46655 * 120.00036 * 9 7 5 12 12 H 1.48500 * 109.47058 * 239.99828 * 9 7 5 13 13 C 1.53005 * 109.47027 * 240.00252 * 2 1 3 14 14 H 1.09005 * 109.49738 * 300.06575 * 13 2 1 15 15 C 1.53045 * 109.52356 * 60.14584 * 13 2 1 16 16 C 1.53038 * 109.53896 * 181.33335 * 15 13 2 17 17 C 1.53621 * 109.24047 * 298.51075 * 16 15 13 18 18 N 1.46929 * 108.54308 * 54.85711 * 17 16 15 19 19 C 1.34781 * 120.63175 * 126.37018 * 18 17 16 20 20 O 1.21275 * 120.00179 * 179.72267 * 19 18 17 21 21 C 1.50704 * 119.99616 * 359.71489 * 19 18 17 22 22 C 1.53004 * 109.46783 * 180.02562 * 21 19 18 23 23 O 1.42975 * 109.46969 * 185.00370 * 22 21 19 24 24 C 1.43088 * 113.76937 * 181.20897 * 23 22 21 25 25 C 1.53255 * 108.94625 * 57.96488 * 24 23 22 26 26 C 1.53264 * 108.84541 * 305.47882 * 25 24 23 27 27 O 1.42962 * 109.47145 * 65.00214 * 22 21 19 28 28 C 1.46917 * 118.74036 * 306.09173 * 18 17 16 29 29 H 1.08997 * 109.47281 * 59.99664 * 1 2 3 30 30 H 1.08998 * 109.47350 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47067 * 299.99167 * 1 2 3 32 32 H 0.97000 * 120.00489 * 94.99844 * 4 2 1 33 33 H 0.97001 * 120.00296 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.45954 * 301.35515 * 15 13 2 35 35 H 1.09000 * 109.45561 * 61.32840 * 15 13 2 36 36 H 1.08999 * 109.49555 * 58.58442 * 16 15 13 37 37 H 1.08998 * 109.49734 * 178.65406 * 16 15 13 38 38 H 1.08994 * 109.74380 * 295.12121 * 17 16 15 39 39 H 1.09002 * 109.66638 * 174.55158 * 17 16 15 40 40 H 1.09002 * 109.47369 * 60.00594 * 21 19 18 41 41 H 1.08993 * 109.47421 * 300.00216 * 21 19 18 42 42 H 1.09002 * 109.46905 * 305.00016 * 22 21 19 43 43 H 1.08992 * 109.56024 * 177.80896 * 24 23 22 44 44 H 1.09007 * 109.55728 * 298.13131 * 24 23 22 45 45 H 1.08999 * 109.58133 * 185.66903 * 25 24 23 46 46 H 1.09005 * 109.67808 * 65.34807 * 25 24 23 47 47 H 1.08997 * 109.55901 * 294.68114 * 26 25 24 48 48 H 1.09000 * 109.55615 * 174.36187 * 26 25 24 49 49 H 1.08997 * 109.59212 * 173.64882 * 28 18 17 50 50 H 1.09004 * 109.58683 * 293.93126 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1491 -0.0077 2.3757 6 1 1.8927 1.0403 2.4242 7 6 2.6113 -0.6623 3.5091 8 7 2.9244 -1.9394 3.4500 9 14 2.7905 0.2697 5.1182 10 1 2.3765 1.6820 4.9208 11 1 1.9293 -0.3582 6.1523 12 1 4.2074 0.2257 5.5606 13 6 2.0399 -0.7212 -1.2493 14 1 1.6758 -1.7487 -1.2504 15 6 1.5334 0.0015 -2.4997 16 6 2.0157 -0.7387 -3.7493 17 6 3.5516 -0.7356 -3.7784 18 7 4.0440 -1.3011 -2.5148 19 6 4.9166 -2.3283 -2.5161 20 8 5.3195 -2.7830 -1.4664 21 6 5.3915 -2.9119 -3.8218 22 6 6.3677 -4.0567 -3.5437 23 8 6.9074 -4.5336 -4.7788 24 6 7.8156 -5.6287 -4.6268 25 6 7.0939 -6.7787 -3.9158 26 6 6.5036 -6.2555 -2.6017 27 8 5.6786 -5.1205 -2.8824 28 6 3.5718 -0.7216 -1.2500 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2490 -1.6319 1.1525 33 1 3.2477 -2.3967 4.2419 34 1 0.4437 0.0247 -2.4893 35 1 1.9184 1.0212 -2.5106 36 1 1.6519 -1.7659 -3.7268 37 1 1.6347 -0.2371 -4.6389 38 1 3.9158 0.2859 -3.8879 39 1 3.9040 -1.3426 -4.6123 40 1 5.8937 -2.1391 -4.4039 41 1 4.5373 -3.2914 -4.3823 42 1 7.1772 -3.6976 -2.9081 43 1 8.1537 -5.9613 -5.6081 44 1 8.6724 -5.3123 -4.0317 45 1 7.8024 -7.5796 -3.7045 46 1 6.2930 -7.1577 -4.5506 47 1 7.3106 -5.9629 -1.9301 48 1 5.9033 -7.0364 -2.1349 49 1 3.9374 -1.3194 -0.4151 50 1 3.9397 0.3002 -1.1564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753792607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:59 Heat of formation + Delta-G solvation = -124.835438 kcal Electronic energy + Delta-G solvation = -29363.872784 eV Core-core repulsion = 25391.034874 eV Total energy + Delta-G solvation = -3972.837910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42041 -39.63966 -37.67780 -35.76929 -35.35745 -33.40659 -32.87090 -31.67956 -30.68676 -29.47850 -28.07598 -26.14641 -25.39617 -24.34427 -23.29912 -22.69532 -21.36789 -20.93447 -19.51232 -18.78204 -17.76278 -17.05851 -16.93327 -16.52594 -16.05136 -15.61229 -15.05860 -14.94495 -14.87403 -14.70090 -14.33395 -14.01422 -13.70165 -13.44764 -13.27490 -13.15525 -12.94154 -12.84496 -12.66116 -12.29496 -12.04482 -11.94948 -11.72864 -11.32361 -11.29538 -11.24745 -11.00941 -10.92559 -10.81880 -10.65822 -10.52607 -10.19843 -10.17241 -10.08032 -9.80219 -9.76598 -9.53704 -9.43523 -8.84130 -8.35064 -6.86202 -5.66174 -2.95450 2.84151 2.93126 3.48844 3.53752 3.55210 3.56531 3.58790 4.48890 4.50944 4.58012 4.64344 4.71620 4.79927 4.86722 4.95532 4.99556 5.09091 5.09967 5.20212 5.29594 5.32598 5.42597 5.43614 5.51544 5.55489 5.64422 5.65635 5.76557 5.80942 5.85857 5.87407 5.99061 6.07610 6.19036 6.26052 6.27882 6.49589 6.55427 6.59473 6.66017 6.79160 6.83447 6.98194 7.06063 7.16448 7.62797 7.78526 8.42058 8.51198 9.62342 10.20858 10.55212 11.55979 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.003332 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.989980 B = 8400.404231 C =10130.852025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.105 3.895 18 N -0.612 5.612 19 C 0.516 3.484 20 O -0.518 6.518 21 C -0.126 4.126 22 C 0.263 3.737 23 O -0.398 6.398 24 C 0.060 3.940 25 C -0.193 4.193 26 C 0.057 3.943 27 O -0.374 6.374 28 C 0.124 3.876 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -3.587 -22.286 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.576 5.576 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.123 4.123 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.018 4.018 18 N -0.347 5.347 19 C 0.302 3.698 20 O -0.393 6.393 21 C -0.166 4.166 22 C 0.168 3.832 23 O -0.319 6.319 24 C -0.017 4.017 25 C -0.231 4.231 26 C -0.019 4.019 27 O -0.294 6.294 28 C 0.002 3.998 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.219 0.781 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.118 0.882 49 H 0.125 0.875 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.858 -3.616 -21.680 22.747 hybrid contribution 0.404 -0.058 1.035 1.112 sum 6.262 -3.674 -20.645 21.885 Atomic orbital electron populations 1.22479 0.99371 1.00783 0.99823 1.20170 0.91784 0.95216 0.85857 0.93586 1.42468 1.78038 1.10789 1.05285 1.19233 1.36517 0.93754 0.87337 0.91281 1.24736 1.02301 0.95927 0.97949 1.69685 1.50741 1.08589 1.28620 0.86179 0.77256 0.78754 0.84369 1.20658 1.22019 1.21966 1.21759 0.94813 1.00475 0.95242 0.91200 1.21624 1.01008 0.99004 0.93620 1.21993 0.94878 1.01613 0.98736 1.21839 0.94868 0.99114 0.85988 1.48158 1.44780 1.33883 1.07853 1.20100 0.79442 0.79674 0.90547 1.90796 1.56172 1.59223 1.33144 1.21485 1.00736 0.96794 0.97541 1.22891 0.92139 0.86588 0.81598 1.88033 1.61673 1.50229 1.31937 1.22620 0.91178 0.86183 1.01692 1.22815 1.01983 0.99317 0.99011 1.22626 0.95404 0.88784 0.95114 1.88207 1.37524 1.26543 1.77145 1.21676 0.93781 0.98807 0.85490 0.94311 0.93628 0.92928 0.78150 0.93630 0.91264 0.91920 0.91519 0.91071 0.91344 0.90172 0.87003 0.87451 0.91727 0.88362 0.92760 0.89785 0.90066 0.92645 0.88234 0.87519 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.14 37.15 0.34 -2.63 16 2 C 0.18 3.55 2.48 -67.93 -0.17 3.38 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -18.36 4.52 -53.43 -0.24 -18.60 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 9 Si 0.90 22.94 29.55 -169.99 -5.02 17.91 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 C -0.10 -1.70 1.97 -90.49 -0.18 -1.88 16 14 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.11 -1.42 4.86 -26.69 -0.13 -1.55 16 16 C -0.13 -1.35 6.10 -26.39 -0.16 -1.51 16 17 C 0.11 1.07 6.37 -3.49 -0.02 1.04 16 18 N -0.61 -8.94 2.97 -172.51 -0.51 -9.45 16 19 C 0.52 8.28 7.58 -10.98 -0.08 8.19 16 20 O -0.52 -10.89 14.83 -8.83 -0.13 -11.02 16 21 C -0.13 -1.50 4.13 -27.88 -0.12 -1.61 16 22 C 0.26 3.48 2.80 37.16 0.10 3.59 16 23 O -0.40 -4.64 10.54 -59.03 -0.62 -5.26 16 24 C 0.06 0.52 6.96 37.29 0.26 0.78 16 25 C -0.19 -1.65 6.35 -26.46 -0.17 -1.82 16 26 C 0.06 0.66 6.96 37.29 0.26 0.92 16 27 O -0.37 -5.66 9.77 -64.75 -0.63 -6.29 16 28 C 0.12 2.19 5.47 -3.71 -0.02 2.17 16 29 H 0.04 0.57 6.41 -51.93 -0.33 0.24 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.38 10.66 7.61 -40.82 -0.31 10.35 16 33 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 40 H 0.11 1.01 7.93 -51.93 -0.41 0.60 16 41 H 0.11 1.16 7.70 -51.93 -0.40 0.76 16 42 H 0.07 0.90 7.95 -51.93 -0.41 0.49 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.11 2.40 6.51 -51.93 -0.34 2.06 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -34.81 387.77 -9.65 -44.46 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.73 Total: 8.89 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.33 Total: 1.79 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.03 Total: -56.33 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -1.39 Total: -22.58 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.81 -9.65 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753792607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.373 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds