Wall clock time and date at job start Tue Mar 31 2020 14:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46905 * 2 1 4 4 H 1.09001 * 109.71611 * 59.90501 * 3 2 1 5 5 C 1.52879 * 109.61920 * 299.60354 * 3 2 1 6 6 O 1.42961 * 109.29889 * 188.11748 * 5 3 2 7 7 C 1.42966 * 114.16836 * 62.44980 * 6 5 3 8 8 C 1.52997 * 109.51239 * 177.49613 * 7 6 5 9 9 C 1.52996 * 109.55363 * 57.36762 * 7 6 5 10 10 C 1.53291 * 109.21961 * 297.42062 * 7 6 5 11 11 N 1.47150 * 108.38711 * 52.30000 * 10 7 6 12 12 C 1.34779 * 120.97905 * 129.44496 * 11 10 7 13 13 O 1.21585 * 119.99509 * 185.65248 * 12 11 10 14 14 N 1.34776 * 120.00311 * 5.64838 * 12 11 10 15 15 C 1.46495 * 119.99923 * 175.02486 * 14 12 11 16 16 C 1.53001 * 109.46980 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47211 * 60.00263 * 16 15 14 18 18 C 1.53003 * 109.47103 * 300.00133 * 16 15 14 19 19 C 1.53006 * 109.47176 * 180.02562 * 16 15 14 20 20 C 1.50697 * 109.47033 * 180.02562 * 19 16 15 21 21 H 1.08003 * 120.00143 * 359.97438 * 20 19 16 22 22 C 1.37880 * 120.00038 * 180.02562 * 20 19 16 23 23 N 1.31518 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00241 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46822 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47329 * 119.99497 * 24 22 20 27 27 H 1.48501 * 109.46834 * 240.00067 * 24 22 20 28 28 H 1.08993 * 109.47380 * 295.07380 * 1 2 3 29 29 H 1.08998 * 109.47293 * 55.07407 * 1 2 3 30 30 H 1.08996 * 109.46945 * 175.06825 * 1 2 3 31 31 H 1.08997 * 109.47109 * 240.00166 * 2 1 3 32 32 H 1.08996 * 109.46647 * 119.99479 * 2 1 3 33 33 H 1.09001 * 109.58473 * 68.10265 * 5 3 2 34 34 H 1.09000 * 109.40683 * 308.02078 * 5 3 2 35 35 H 1.08996 * 109.47263 * 179.74658 * 8 7 6 36 36 H 1.09008 * 109.47142 * 299.74104 * 8 7 6 37 37 H 1.08999 * 109.47499 * 59.74538 * 8 7 6 38 38 H 1.08998 * 109.47510 * 300.23078 * 9 7 6 39 39 H 1.09004 * 109.47270 * 60.22651 * 9 7 6 40 40 H 1.08995 * 109.47118 * 180.22972 * 9 7 6 41 41 H 1.09005 * 109.68239 * 292.57893 * 10 7 6 42 42 H 1.08996 * 109.68240 * 172.02662 * 10 7 6 43 43 H 0.97003 * 119.99674 * 355.02951 * 14 12 11 44 44 H 1.09007 * 109.47319 * 60.00206 * 15 14 12 45 45 H 1.09004 * 109.47561 * 300.00340 * 15 14 12 46 46 H 1.09001 * 109.47415 * 180.02562 * 17 16 15 47 47 H 1.09008 * 109.47133 * 299.99799 * 17 16 15 48 48 H 1.09001 * 109.47165 * 59.99608 * 17 16 15 49 49 H 1.08998 * 109.46668 * 299.99811 * 18 16 15 50 50 H 1.08998 * 109.47181 * 60.00246 * 18 16 15 51 51 H 1.09005 * 109.46890 * 180.02562 * 18 16 15 52 52 H 1.09001 * 109.46771 * 300.00129 * 19 16 15 53 53 H 1.08995 * 109.47066 * 59.99592 * 19 16 15 54 54 H 0.96993 * 120.00083 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6774 1.9607 0.8878 5 6 1.5404 2.1636 -1.2521 6 8 2.1704 3.4436 -1.3432 7 6 3.5920 3.3876 -1.4837 8 6 4.1469 4.8055 -1.6337 9 6 3.9522 2.5642 -2.7218 10 6 4.1967 2.7302 -0.2379 11 7 3.5114 1.4480 -0.0108 12 6 4.2109 0.3112 0.1763 13 8 3.6295 -0.7534 0.2598 14 7 5.5546 0.3545 0.2708 15 6 6.3066 -0.8635 0.5826 16 6 7.8015 -0.5415 0.6313 17 6 8.0619 0.5094 1.7124 18 6 8.2507 0.0018 -0.7267 19 6 8.5870 -1.8137 0.9563 20 6 10.0593 -1.4963 1.0049 21 1 10.4008 -0.4881 0.8218 22 6 10.9707 -2.4932 1.2820 23 7 10.5549 -3.7209 1.5044 24 14 12.7959 -2.1000 1.3415 25 1 13.0008 -0.6569 1.0575 26 1 13.3274 -2.4197 2.6907 27 1 13.5103 -2.9108 0.3230 28 1 -0.3634 0.4355 0.9307 29 1 -0.3634 0.5883 -0.8426 30 1 -0.3633 -1.0238 -0.0883 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.4597 2.2931 -1.1924 34 1 1.7881 1.5723 -2.1336 35 1 5.2312 4.7624 -1.7362 36 1 3.7165 5.2723 -2.5197 37 1 3.8884 5.3921 -0.7521 38 1 3.5550 1.5548 -2.6151 39 1 3.5218 3.0322 -3.6072 40 1 5.0363 2.5190 -2.8253 41 1 4.0550 3.3802 0.6257 42 1 5.2609 2.5549 -0.3952 43 1 6.0238 1.1921 0.1325 44 1 6.1208 -1.6124 -0.1874 45 1 5.9869 -1.2503 1.5503 46 1 9.1268 0.7392 1.7468 47 1 7.5023 1.4157 1.4804 48 1 7.7418 0.1224 2.6798 49 1 8.0652 -0.7470 -1.4968 50 1 7.6912 0.9080 -0.9586 51 1 9.3159 0.2308 -0.6921 52 1 8.2670 -2.2010 1.9236 53 1 8.4014 -2.5620 0.1859 54 1 11.1960 -4.4223 1.6990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593405708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:27 Heat of formation + Delta-G solvation = -92.681144 kcal Electronic energy + Delta-G solvation = -30362.195918 eV Core-core repulsion = 26526.585417 eV Total energy + Delta-G solvation = -3835.610501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 326.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09987 -40.13292 -38.77548 -36.48771 -35.81205 -34.92607 -33.87828 -33.00530 -29.33113 -28.99081 -28.24018 -27.96944 -27.66252 -27.15676 -25.33917 -24.45768 -22.46268 -21.67294 -20.47450 -19.82510 -18.69916 -18.36472 -17.79373 -17.21103 -17.01754 -16.52209 -16.20916 -15.92855 -15.67045 -15.63164 -15.25584 -14.80064 -14.76788 -14.60149 -14.29075 -14.06537 -13.94090 -13.82610 -13.75989 -13.34330 -13.16450 -12.96622 -12.89337 -12.78008 -12.68938 -12.61536 -12.52703 -12.35212 -12.25713 -12.21393 -12.15052 -11.93675 -11.70857 -11.57392 -11.52308 -11.05843 -11.02364 -10.85210 -10.51663 -10.33479 -10.03507 -9.37909 -8.13471 -6.21194 1.42164 1.43175 1.51486 1.55111 2.11463 2.44473 2.68938 2.86941 3.21274 3.56381 3.80484 3.84741 3.89600 3.97584 3.99653 4.09101 4.10794 4.20527 4.27701 4.38584 4.50288 4.57026 4.60548 4.68488 4.72448 4.74612 4.75418 4.77821 4.82155 4.86095 4.93727 4.95372 4.99675 5.10081 5.11848 5.19775 5.23600 5.29841 5.31075 5.38672 5.39143 5.50015 5.50125 5.54136 5.59824 5.69230 5.80631 5.86879 5.90673 6.18215 6.31287 6.92471 6.95886 7.46632 7.56571 8.99346 Molecular weight = 326.24amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.002915 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.039992 B = 9603.101385 C =10634.259269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C 0.131 3.869 4 H 0.083 0.917 5 C 0.053 3.947 6 O -0.379 6.379 7 C 0.098 3.902 8 C -0.134 4.134 9 C -0.175 4.175 10 C 0.084 3.916 11 N -0.627 5.627 12 C 0.701 3.299 13 O -0.618 6.618 14 N -0.727 5.727 15 C 0.163 3.837 16 C -0.064 4.064 17 C -0.119 4.119 18 C -0.119 4.119 19 C 0.041 3.959 20 C -0.511 4.511 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.939 5.939 24 Si 0.958 3.042 25 H -0.255 1.255 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.404 0.596 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.036 0.964 49 H 0.036 0.964 50 H 0.066 0.934 51 H 0.057 0.943 52 H -0.015 1.015 53 H -0.015 1.015 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.213 19.892 -6.740 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C 0.027 3.973 4 H 0.101 0.899 5 C -0.025 4.025 6 O -0.298 6.298 7 C 0.058 3.942 8 C -0.192 4.192 9 C -0.232 4.232 10 C -0.039 4.039 11 N -0.365 5.365 12 C 0.403 3.597 13 O -0.499 6.499 14 N -0.385 5.385 15 C 0.038 3.962 16 C -0.065 4.065 17 C -0.176 4.176 18 C -0.176 4.176 19 C 0.004 3.996 20 C -0.549 4.549 21 H 0.092 0.908 22 C -0.202 4.202 23 N -0.580 5.580 24 Si 0.784 3.216 25 H -0.179 1.179 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.243 0.757 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.085 0.915 51 H 0.076 0.924 52 H 0.004 0.996 53 H 0.004 0.996 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.649 19.146 -6.616 26.867 hybrid contribution 1.405 -0.915 0.213 1.690 sum -16.244 18.231 -6.403 25.243 Atomic orbital electron populations 1.21945 0.94418 1.02247 1.02600 1.21768 0.95448 0.93719 1.03133 1.21846 0.77767 0.98002 0.99645 0.89911 1.23103 0.98979 0.84610 0.95780 1.87993 1.19593 1.28345 1.93828 1.21996 0.81380 0.97752 0.93102 1.21760 1.01805 0.91989 1.03626 1.22367 1.03060 0.99672 0.98145 1.22593 0.97649 0.84405 0.99246 1.47341 1.06562 1.06470 1.76119 1.16104 0.81929 0.83878 0.77832 1.90938 1.68667 1.30420 1.59850 1.45303 1.04471 1.12971 1.75750 1.21036 0.90669 0.85624 0.98850 1.20714 0.91288 0.97343 0.97122 1.21670 1.01902 0.97118 0.96957 1.21667 1.01571 0.99638 0.94727 1.18956 0.94621 0.91928 0.94144 1.21621 0.92023 0.95389 1.45904 0.90803 1.25951 1.03742 0.94990 0.95555 1.70131 1.35711 1.02013 1.50181 0.85495 0.79916 0.78949 0.77282 1.17891 1.21133 1.21144 0.91860 0.91182 0.92709 0.93419 0.91824 0.85583 0.92923 0.89054 0.91099 0.91033 0.93954 0.90987 0.90434 0.89290 0.88512 0.75678 0.93981 0.93967 0.92402 0.91504 0.94491 0.94528 0.91511 0.92392 0.99626 0.99639 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.71 71.98 0.70 -1.92 16 2 C -0.10 -2.49 3.88 30.59 0.12 -2.37 16 3 C 0.13 2.71 3.19 44.83 0.14 2.85 16 4 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 5 C 0.05 0.89 5.29 71.94 0.38 1.27 16 6 O -0.38 -6.73 10.23 -148.98 -1.52 -8.25 16 7 C 0.10 1.47 1.11 -10.70 -0.01 1.46 16 8 C -0.13 -1.37 8.85 71.98 0.64 -0.73 16 9 C -0.18 -2.81 8.10 71.98 0.58 -2.23 16 10 C 0.08 1.37 5.24 86.35 0.45 1.83 16 11 N -0.63 -14.37 2.55 -812.18 -2.07 -16.43 16 12 C 0.70 21.30 8.23 179.05 1.47 22.78 16 13 O -0.62 -23.47 11.90 -3.98 -0.05 -23.52 16 14 N -0.73 -20.71 4.87 -478.53 -2.33 -23.04 16 15 C 0.16 5.90 4.57 86.38 0.39 6.29 16 16 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 17 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 18 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 19 C 0.04 2.08 4.04 29.85 0.12 2.20 16 20 C -0.51 -27.14 7.65 25.60 0.20 -26.94 16 21 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 22 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 23 N -0.94 -57.05 13.29 21.45 0.28 -56.77 16 24 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.91 6.39 -2.39 -0.02 0.90 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.38 7.25 -2.39 -0.02 1.37 16 32 H 0.06 1.98 6.30 -2.39 -0.02 1.96 16 33 H 0.13 1.59 6.80 -2.39 -0.02 1.57 16 34 H 0.05 0.99 6.24 -2.39 -0.01 0.97 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.04 0.87 6.11 -2.39 -0.01 0.86 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.10 1.36 5.78 -2.39 -0.01 1.35 16 43 H 0.40 9.14 3.73 -92.71 -0.35 8.79 16 44 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 47 H 0.07 1.66 6.86 -2.38 -0.02 1.65 16 48 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 51 H 0.06 2.03 6.62 -2.38 -0.02 2.02 16 52 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 53 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 54 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -69.20 397.30 3.65 -65.55 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.53 Total: 21.62 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 6.78 Total: -4.49 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -4.11 Total: -96.24 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.57 Total: -31.77 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.20 3.65 -65.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593405708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.128 kcal (2) G-P(sol) polarization free energy of solvation -69.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds