Wall clock time and date at job start Tue Mar 31 2020 14:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47307 * 2 1 4 4 C 1.53003 * 109.46872 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46790 * 180.02562 * 4 3 2 6 6 C 1.42897 * 114.00289 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.46681 * 329.99837 * 6 5 4 8 8 C 1.53002 * 109.47128 * 89.99771 * 6 5 4 9 9 C 1.50699 * 109.47269 * 209.99873 * 6 5 4 10 10 O 1.21281 * 120.00186 * 350.64250 * 9 6 5 11 11 N 1.34781 * 119.99856 * 170.64280 * 9 6 5 12 12 C 1.48147 * 127.83624 * 354.98699 * 11 9 6 13 13 C 1.54397 * 104.61452 * 140.39645 * 12 11 9 14 14 H 1.09002 * 110.34155 * 142.84407 * 13 12 11 15 15 C 1.53002 * 110.33932 * 264.99891 * 13 12 11 16 16 C 1.54282 * 104.95928 * 23.86695 * 13 12 11 17 17 C 1.53004 * 110.34355 * 241.13243 * 16 13 12 18 18 C 1.52999 * 110.34452 * 118.87229 * 16 13 12 19 19 N 1.46496 * 109.47345 * 179.97438 * 18 16 13 20 20 C 1.36942 * 120.00051 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99653 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00031 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99978 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00095 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47255 * 90.00181 * 24 22 20 26 26 H 1.48499 * 109.47332 * 209.99728 * 24 22 20 27 27 H 1.48501 * 109.47009 * 329.99884 * 24 22 20 28 28 C 1.48142 * 127.83717 * 174.96896 * 11 9 6 29 29 H 1.08996 * 109.47187 * 59.99948 * 1 2 3 30 30 H 1.08996 * 109.47162 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46508 * 299.99590 * 1 2 3 32 32 H 1.09002 * 109.47143 * 240.00017 * 2 1 3 33 33 H 1.08999 * 109.47659 * 120.00208 * 2 1 3 34 34 H 1.08996 * 109.47150 * 60.00376 * 3 2 1 35 35 H 1.08996 * 109.47039 * 300.00143 * 3 2 1 36 36 H 1.08996 * 109.47296 * 60.00012 * 4 3 2 37 37 H 1.08996 * 109.47035 * 299.99692 * 4 3 2 38 38 H 1.08996 * 109.47023 * 65.50697 * 8 6 5 39 39 H 1.08998 * 109.47046 * 185.50922 * 8 6 5 40 40 H 1.09003 * 109.47186 * 305.50843 * 8 6 5 41 41 H 1.08998 * 110.41146 * 21.61562 * 12 11 9 42 42 H 1.08991 * 110.40908 * 259.17638 * 12 11 9 43 43 H 1.08991 * 109.47390 * 58.55056 * 15 13 12 44 44 H 1.09007 * 109.46612 * 178.54768 * 15 13 12 45 45 H 1.08995 * 109.47006 * 298.53868 * 15 13 12 46 46 H 1.09000 * 109.47275 * 59.99786 * 17 16 13 47 47 H 1.08997 * 109.46943 * 180.02562 * 17 16 13 48 48 H 1.09005 * 109.46829 * 299.99744 * 17 16 13 49 49 H 1.09000 * 109.47001 * 300.00142 * 18 16 13 50 50 H 1.09001 * 109.47358 * 59.99816 * 18 16 13 51 51 H 0.96998 * 120.00268 * 0.02562 * 19 18 16 52 52 H 0.97009 * 119.99998 * 180.02562 * 23 22 20 53 53 H 1.09005 * 110.40754 * 338.38423 * 28 11 9 54 54 H 1.09001 * 110.40948 * 100.82191 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9025 0.0000 7 1 5.9033 2.0438 0.5135 8 6 5.9793 2.9434 -1.4425 9 6 5.8745 4.1685 0.7109 10 8 5.0325 4.9841 1.0220 11 7 7.1712 4.3943 1.0011 12 6 8.3204 3.4820 0.7968 13 6 9.4633 4.3983 0.3089 14 1 10.4159 4.0699 0.7247 15 6 9.5248 4.4037 -1.2199 16 6 9.1008 5.8022 0.8361 17 6 8.9124 6.7756 -0.3293 18 6 10.1876 6.3110 1.7852 19 7 9.8249 7.6438 2.2733 20 6 10.6525 8.3033 3.1425 21 1 11.5727 7.8410 3.4678 22 6 10.3091 9.5663 3.6045 23 7 11.1048 10.2004 4.4395 24 14 8.7178 10.3662 3.0413 25 1 7.6220 9.9992 3.9740 26 1 8.8830 11.8419 3.0282 27 1 8.3831 9.8935 1.6739 28 6 7.7706 5.6113 1.5963 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9285 0.8891 38 1 5.6258 3.8537 -1.9267 39 1 7.0692 2.9308 -1.4441 40 1 5.6051 2.0748 -1.9844 41 1 8.0827 2.7349 0.0395 42 1 8.5942 2.9997 1.7350 43 1 8.5708 4.7459 -1.6207 44 1 10.3188 5.0741 -1.5491 45 1 9.7289 3.3950 -1.5788 46 1 8.1088 6.4195 -0.9739 47 1 8.6575 7.7618 0.0588 48 1 9.8372 6.8391 -0.9028 49 1 10.2818 5.6277 2.6292 50 1 11.1378 6.3652 1.2539 51 1 8.9982 8.0588 1.9814 52 1 10.8646 11.0830 4.7627 53 1 7.1181 6.4708 1.4422 54 1 7.9586 5.4614 2.6595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180823721.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:49 Heat of formation + Delta-G solvation = -101.251089 kcal Electronic energy + Delta-G solvation = -29295.230232 eV Core-core repulsion = 25459.248111 eV Total energy + Delta-G solvation = -3835.982122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 326.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68605 -40.02486 -38.66580 -36.68673 -35.94935 -34.68680 -33.31674 -32.68227 -31.38081 -29.81969 -28.66736 -27.55136 -26.66317 -25.39494 -24.54232 -23.81553 -22.37072 -22.05164 -20.56819 -20.20116 -19.36893 -18.34209 -17.55690 -17.23406 -16.95944 -16.66071 -16.54856 -15.89602 -15.58022 -15.51562 -15.29142 -14.94526 -14.91059 -14.62567 -14.34115 -14.26249 -14.02481 -13.76312 -13.65005 -13.50024 -13.21409 -13.18580 -13.12809 -12.92516 -12.80377 -12.61397 -12.48184 -12.35269 -12.31760 -12.09123 -11.97113 -11.87922 -11.81999 -11.55288 -11.51290 -11.45484 -11.23345 -11.01949 -10.96977 -10.51123 -9.79804 -9.28539 -8.04811 -5.35754 1.32548 1.35237 1.40416 1.47791 1.60632 2.43798 2.75602 3.26496 3.28676 3.51039 3.57975 3.74692 3.83396 3.93323 3.93857 4.01605 4.11772 4.19397 4.20503 4.24272 4.29362 4.40171 4.41566 4.49011 4.59678 4.62318 4.66330 4.70409 4.76465 4.78860 4.82440 4.88568 4.89499 4.94388 5.00203 5.01202 5.04772 5.06208 5.10644 5.18944 5.23031 5.27073 5.33734 5.36490 5.42318 5.43547 5.61074 5.75963 6.11940 6.20081 6.50948 7.05551 7.06905 7.84742 8.00900 9.16743 Molecular weight = 326.24amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.002609 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.265552 B =10730.920324 C =11713.930123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.055 3.945 5 O -0.394 6.394 6 C 0.082 3.918 7 H 0.115 0.885 8 C -0.165 4.165 9 C 0.523 3.477 10 O -0.584 6.584 11 N -0.614 5.614 12 C 0.097 3.903 13 C -0.089 4.089 14 H 0.107 0.893 15 C -0.143 4.143 16 C -0.070 4.070 17 C -0.130 4.130 18 C 0.169 3.831 19 N -0.759 5.759 20 C -0.224 4.224 21 H 0.065 0.935 22 C -0.059 4.059 23 N -0.980 5.980 24 Si 0.940 3.060 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.258 1.258 28 C 0.116 3.884 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.027 0.973 48 H 0.074 0.926 49 H 0.033 0.967 50 H 0.037 0.963 51 H 0.362 0.638 52 H 0.257 0.743 53 H 0.048 0.952 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.220 -28.040 -16.746 34.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.158 4.158 4 C -0.021 4.021 5 O -0.313 6.313 6 C 0.021 3.979 7 H 0.133 0.867 8 C -0.222 4.222 9 C 0.313 3.687 10 O -0.464 6.464 11 N -0.348 5.348 12 C -0.025 4.025 13 C -0.108 4.108 14 H 0.125 0.875 15 C -0.200 4.200 16 C -0.072 4.072 17 C -0.187 4.187 18 C 0.043 3.957 19 N -0.404 5.404 20 C -0.355 4.355 21 H 0.083 0.917 22 C -0.251 4.251 23 N -0.632 5.632 24 Si 0.768 3.232 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.183 1.183 28 C -0.007 4.007 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.093 0.907 49 H 0.051 0.949 50 H 0.055 0.945 51 H 0.195 0.805 52 H 0.066 0.934 53 H 0.066 0.934 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.733 -27.478 -16.499 34.488 hybrid contribution -0.760 1.546 0.569 1.814 sum -13.493 -25.932 -15.930 33.291 Atomic orbital electron populations 1.21778 0.95370 1.02287 1.01766 1.21415 0.96310 0.94498 1.03079 1.21564 0.93353 0.98438 1.02414 1.22863 0.95441 0.82117 1.01703 1.88023 1.19461 1.28650 1.95191 1.21915 0.83275 0.94749 0.97943 0.86750 1.22294 1.03129 1.03852 0.92940 1.20888 0.80406 0.88930 0.78495 1.90706 1.50951 1.49549 1.55150 1.48972 1.06125 1.18291 1.61401 1.22961 0.83669 0.92681 1.03141 1.22150 0.99413 0.91397 0.97866 0.87457 1.21952 1.02016 1.03216 0.92803 1.21644 0.93159 0.97108 0.95245 1.21863 1.02315 0.97337 0.97189 1.20904 0.95434 0.84809 0.94528 1.42836 1.24444 1.18009 1.55145 1.19062 1.01535 0.98002 1.16901 0.91719 1.25341 1.01305 0.98172 1.00280 1.69851 1.39806 1.15254 1.38253 0.85641 0.80770 0.77778 0.78974 1.21226 1.21940 1.18313 1.22317 0.93550 0.87667 0.97152 0.92717 0.91507 0.93259 0.90483 0.91245 0.92886 0.91766 0.90671 0.92256 0.93291 0.88451 0.88728 0.86574 0.89177 0.92905 0.92172 0.89777 0.91917 0.95385 0.90676 0.94907 0.94476 0.80464 0.93430 0.93377 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.14 5.93 30.59 0.18 -0.96 16 3 C -0.12 -1.79 5.58 30.60 0.17 -1.62 16 4 C 0.05 0.80 5.75 71.98 0.41 1.21 16 5 O -0.39 -9.36 9.54 -130.11 -1.24 -10.60 16 6 C 0.08 1.56 2.39 29.85 0.07 1.63 16 7 H 0.11 1.39 7.63 -2.39 -0.02 1.37 16 8 C -0.16 -2.15 9.34 71.98 0.67 -1.48 16 9 C 0.52 15.15 7.23 87.66 0.63 15.79 16 10 O -0.58 -23.98 16.83 15.83 0.27 -23.71 16 11 N -0.61 -15.25 3.32 -807.93 -2.68 -17.93 16 12 C 0.10 1.43 6.20 86.54 0.54 1.97 16 13 C -0.09 -1.50 3.30 -9.88 -0.03 -1.54 16 14 H 0.11 1.58 7.72 -2.39 -0.02 1.56 16 15 C -0.14 -1.88 7.80 71.98 0.56 -1.32 16 16 C -0.07 -1.91 0.73 -51.27 -0.04 -1.94 16 17 C -0.13 -3.65 7.09 71.98 0.51 -3.14 16 18 C 0.17 5.95 4.87 86.38 0.42 6.37 16 19 N -0.76 -35.27 4.92 -343.46 -1.69 -36.96 16 20 C -0.22 -12.76 10.47 84.03 0.88 -11.88 16 21 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 22 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 23 N -0.98 -63.62 13.97 21.65 0.30 -63.32 16 24 Si 0.94 47.81 27.74 68.60 1.90 49.71 16 25 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 26 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 27 H -0.26 -12.15 6.52 99.48 0.65 -11.51 16 28 C 0.12 3.64 5.69 86.54 0.49 4.14 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 0.71 7.78 -2.39 -0.02 0.70 16 37 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.84 5.77 -2.39 -0.01 0.82 16 40 H 0.09 0.79 7.78 -2.39 -0.02 0.77 16 41 H 0.12 0.90 5.18 -2.39 -0.01 0.89 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 0.78 6.47 -2.39 -0.02 0.77 16 44 H 0.06 0.88 6.98 -2.38 -0.02 0.86 16 45 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 1.60 6.72 -2.39 -0.02 1.59 16 47 H 0.03 0.95 6.74 -2.39 -0.02 0.94 16 48 H 0.07 1.90 6.89 -2.38 -0.02 1.88 16 49 H 0.03 1.15 8.10 -2.39 -0.02 1.13 16 50 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.36 16.86 4.04 -92.71 -0.37 16.48 16 52 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 53 H 0.05 1.81 7.64 -2.38 -0.02 1.79 16 54 H 0.07 2.23 7.83 -2.39 -0.02 2.21 16 Total: -1.00 -80.83 412.13 3.94 -76.89 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.42 Total: 22.62 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 6.66 Total: 3.30 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -4.07 Total: -118.21 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.97 Total: -34.31 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.90 Total: 49.71 kcal Total: -80.83 3.94 -76.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180823721.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.362 kcal (2) G-P(sol) polarization free energy of solvation -80.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds