Wall clock time and date at job start Tue Mar 31 2020 14:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86798 * 119.99590 * 2 1 4 4 H 1.48509 * 109.46579 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47402 * 299.99643 * 3 2 1 6 6 H 1.48495 * 109.47380 * 60.00071 * 3 2 1 7 7 C 1.39920 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 196.69353 * 7 2 1 9 9 C 1.41293 * 119.99903 * 16.68816 * 7 2 1 10 10 C 1.40633 * 120.22806 * 25.31595 * 9 7 2 11 11 C 1.38166 * 119.70687 * 180.02562 * 10 9 7 12 12 N 1.39912 * 119.91495 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00229 * 145.75785 * 12 11 10 14 14 O 1.21634 * 119.99771 * 355.12432 * 13 12 11 15 15 C 1.47065 * 120.00236 * 175.12795 * 13 12 11 16 16 C 1.33011 * 120.00226 * 179.97438 * 15 13 12 17 17 C 1.50693 * 120.00348 * 180.02562 * 16 15 13 18 18 Br 1.96596 * 109.47420 * 125.00117 * 17 16 15 19 19 C 1.39398 * 120.17138 * 0.26936 * 11 10 9 20 20 C 1.38356 * 120.47009 * 359.44474 * 19 11 10 21 21 C 1.38017 * 120.28644 * 0.55704 * 20 19 11 22 22 F 1.35099 * 120.08946 * 179.70236 * 21 20 19 23 23 H 0.97003 * 120.00272 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.14819 * 0.02845 * 10 9 7 25 25 H 0.97004 * 119.99564 * 326.03118 * 12 11 10 26 26 H 1.07999 * 119.99840 * 0.02562 * 15 13 12 27 27 H 1.08008 * 119.99792 * 359.97438 * 16 15 13 28 28 H 1.09001 * 109.46980 * 245.00506 * 17 16 15 29 29 H 1.09002 * 109.47192 * 4.99578 * 17 16 15 30 30 H 1.07999 * 119.76296 * 179.70601 * 19 11 10 31 31 H 1.08000 * 119.85858 * 180.27867 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2124 6 1 1.8837 2.3965 1.2124 7 6 2.0082 -1.2118 0.0005 8 1 3.0540 -1.2313 0.2692 9 6 1.3463 -2.4097 -0.3503 10 6 0.2126 -2.3749 -1.1818 11 6 -0.4266 -3.5529 -1.5177 12 7 -1.5551 -3.5233 -2.3442 13 6 -1.7804 -4.5284 -3.2134 14 8 -0.9588 -5.4159 -3.3431 15 6 -3.0195 -4.5520 -4.0052 16 6 -3.2416 -5.5436 -4.8634 17 6 -4.5110 -5.5675 -5.6751 18 35 -4.0648 -5.6882 -7.5860 19 6 0.0463 -4.7703 -1.0302 20 6 1.1644 -4.8134 -0.2164 21 6 1.8177 -3.6484 0.1312 22 9 2.9056 -3.6947 0.9309 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1566 -1.4317 -1.5562 25 1 -2.1732 -2.7774 -2.2944 26 1 -3.7487 -3.7637 -3.8904 27 1 -2.5117 -6.3313 -4.9791 28 1 -5.1105 -6.4310 -5.3867 29 1 -5.0772 -4.6544 -5.4912 30 1 -0.4613 -5.6866 -1.2931 31 1 1.5249 -5.7625 0.1521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144475310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:47 Heat of formation + Delta-G solvation = -51.427664 kcal Electronic energy + Delta-G solvation = -18662.347127 eV Core-core repulsion = 15290.295645 eV Total energy + Delta-G solvation = -3372.051482 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 327.001 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.22576 -39.78632 -37.27155 -34.98441 -34.28378 -33.36963 -30.92902 -29.82581 -28.48437 -26.64259 -25.36341 -22.43667 -21.63239 -20.19005 -19.52555 -17.59015 -17.47595 -16.08778 -15.93467 -15.25468 -14.83016 -14.58186 -14.20229 -14.05627 -13.96333 -13.80389 -13.11525 -12.69150 -12.65563 -12.10588 -12.01127 -11.75014 -11.57073 -11.23483 -11.08770 -10.73128 -10.32637 -10.29970 -10.21554 -9.75842 -9.63367 -9.56542 -9.34768 -9.01928 -7.64439 -7.07284 -6.78473 -4.49857 0.80932 1.71919 2.53176 2.68971 3.01956 3.07089 3.09746 3.51029 3.56386 3.85271 4.37729 4.47815 4.48795 4.84827 5.06106 5.20125 5.39831 5.92765 6.00102 6.07426 6.13892 6.49896 6.64835 6.80827 6.83358 7.06821 7.42519 7.50900 7.60395 7.85403 7.91474 8.13786 8.39879 8.59570 8.65589 8.76284 10.03397 Molecular weight = 327.00amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002597 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.864105 B =10779.854692 C =11790.197801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.452 4.452 8 H 0.085 0.915 9 C 0.098 3.902 10 C -0.164 4.164 11 C 0.140 3.860 12 N -0.656 5.656 13 C 0.535 3.465 14 O -0.526 6.526 15 C -0.180 4.180 16 C -0.088 4.088 17 C -0.053 4.053 18 Br -0.148 7.148 19 C -0.205 4.205 20 C -0.112 4.112 21 C -0.032 4.032 22 F -0.163 7.163 23 H 0.282 0.718 24 H 0.131 0.869 25 H 0.405 0.595 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 -5.449 -11.575 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.103 0.897 9 C 0.094 3.906 10 C -0.186 4.186 11 C 0.048 3.952 12 N -0.299 5.299 13 C 0.323 3.677 14 O -0.404 6.404 15 C -0.202 4.202 16 C -0.109 4.109 17 C -0.168 4.168 18 Br -0.067 7.067 19 C -0.226 4.226 20 C -0.132 4.132 21 C -0.052 4.052 22 F -0.142 7.142 23 H 0.092 0.908 24 H 0.148 0.852 25 H 0.240 0.760 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.602 -5.970 -12.288 18.586 hybrid contribution -0.028 1.229 0.623 1.378 sum -12.630 -4.741 -11.665 17.834 Atomic orbital electron populations 1.69809 1.07602 1.29352 1.35108 1.25900 0.94809 1.01475 0.91940 0.86174 0.81141 0.80390 0.78613 1.18209 1.19589 1.19836 1.19526 0.98130 0.90668 1.39763 0.89728 1.17352 0.91942 0.91065 0.90245 1.20901 0.98906 0.95846 1.02927 1.17571 0.88776 0.94888 0.93999 1.43346 1.25625 1.23660 1.37259 1.18470 0.86696 0.82555 0.79948 1.90815 1.46281 1.37148 1.66113 1.22765 0.97836 1.00324 0.99324 1.23472 0.96113 0.98470 0.92798 1.23794 0.98413 1.07539 0.87072 1.97457 1.95369 1.99287 1.14571 1.20109 1.00993 0.96022 1.05503 1.20378 0.96813 0.95838 1.00123 1.17914 0.90845 0.94821 1.01661 1.91271 1.53178 1.97327 1.72403 0.90756 0.85167 0.75996 0.85262 0.84281 0.86470 0.87315 0.87155 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.14 10.94 55.55 0.61 -18.53 16 2 C 0.08 1.85 5.16 -17.34 -0.09 1.76 16 3 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.45 -11.90 8.77 -37.79 -0.33 -12.23 16 8 H 0.08 2.22 7.74 -52.49 -0.41 1.82 16 9 C 0.10 2.59 5.57 -106.78 -0.59 1.99 16 10 C -0.16 -4.02 8.59 -38.70 -0.33 -4.35 16 11 C 0.14 3.13 6.25 -83.76 -0.52 2.61 16 12 N -0.66 -11.59 5.33 -10.97 -0.06 -11.65 16 13 C 0.53 8.98 7.49 -12.68 -0.10 8.88 16 14 O -0.53 -10.83 13.95 5.25 0.07 -10.76 16 15 C -0.18 -2.04 9.64 -37.82 -0.36 -2.40 16 16 C -0.09 -0.89 9.15 -36.12 -0.33 -1.22 16 17 C -0.05 -0.37 7.05 36.00 0.25 -0.12 16 18 Br -0.15 -1.35 33.92 -68.01 -2.31 -3.66 16 19 C -0.21 -4.72 8.65 -39.11 -0.34 -5.05 16 20 C -0.11 -2.63 10.00 -39.62 -0.40 -3.02 16 21 C -0.03 -0.82 7.31 -38.61 -0.28 -1.10 16 22 F -0.16 -4.15 16.72 2.25 0.04 -4.11 16 23 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 24 H 0.13 3.18 6.18 -52.49 -0.32 2.85 16 25 H 0.41 5.85 8.80 -40.82 -0.36 5.49 16 26 H 0.13 1.04 7.87 -52.49 -0.41 0.63 16 27 H 0.14 1.64 7.49 -52.48 -0.39 1.25 16 28 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.11 0.58 7.82 -51.93 -0.41 0.17 16 30 H 0.11 2.46 6.47 -52.49 -0.34 2.12 16 31 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 302.26 15.07 4.55 4.55 Total: -1.00 -29.64 302.26 -8.17 -37.81 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -2.62 Total: 7.50 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -3.42 Total: -14.27 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.55 Total: -30.18 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 35 Polarization: -1.35 SS G_CDS: -2.31 Total: -3.66 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.64 -8.17 -37.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144475310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.622 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds