Wall clock time and date at job start Tue Mar 31 2020 14:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86798 * 119.99590 * 2 1 4 4 H 1.48509 * 109.46579 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47402 * 299.99643 * 3 2 1 6 6 H 1.48495 * 109.47380 * 60.00071 * 3 2 1 7 7 C 1.39920 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 196.69353 * 7 2 1 9 9 C 1.41293 * 119.99903 * 16.68816 * 7 2 1 10 10 C 1.40633 * 120.22806 * 25.31595 * 9 7 2 11 11 C 1.38166 * 119.70687 * 180.02562 * 10 9 7 12 12 N 1.39912 * 119.91495 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00229 * 145.75785 * 12 11 10 14 14 O 1.21634 * 119.99771 * 355.12432 * 13 12 11 15 15 C 1.47065 * 120.00236 * 175.12795 * 13 12 11 16 16 C 1.33011 * 120.00226 * 179.97438 * 15 13 12 17 17 C 1.50693 * 120.00348 * 180.02562 * 16 15 13 18 18 Br 1.96596 * 109.47420 * 125.00117 * 17 16 15 19 19 C 1.39398 * 120.17138 * 0.26936 * 11 10 9 20 20 C 1.38356 * 120.47009 * 359.44474 * 19 11 10 21 21 C 1.38017 * 120.28644 * 0.55704 * 20 19 11 22 22 F 1.35099 * 120.08946 * 179.70236 * 21 20 19 23 23 H 0.97003 * 120.00272 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.14819 * 0.02845 * 10 9 7 25 25 H 0.97004 * 119.99564 * 326.03118 * 12 11 10 26 26 H 1.07999 * 119.99840 * 0.02562 * 15 13 12 27 27 H 1.08008 * 119.99792 * 359.97438 * 16 15 13 28 28 H 1.09001 * 109.46980 * 245.00506 * 17 16 15 29 29 H 1.09002 * 109.47192 * 4.99578 * 17 16 15 30 30 H 1.07999 * 119.76296 * 179.70601 * 19 11 10 31 31 H 1.08000 * 119.85858 * 180.27867 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2124 6 1 1.8837 2.3965 1.2124 7 6 2.0082 -1.2118 0.0005 8 1 3.0540 -1.2313 0.2692 9 6 1.3463 -2.4097 -0.3503 10 6 0.2126 -2.3749 -1.1818 11 6 -0.4266 -3.5529 -1.5177 12 7 -1.5551 -3.5233 -2.3442 13 6 -1.7804 -4.5284 -3.2134 14 8 -0.9588 -5.4159 -3.3431 15 6 -3.0195 -4.5520 -4.0052 16 6 -3.2416 -5.5436 -4.8634 17 6 -4.5110 -5.5675 -5.6751 18 35 -4.0648 -5.6882 -7.5860 19 6 0.0463 -4.7703 -1.0302 20 6 1.1644 -4.8134 -0.2164 21 6 1.8177 -3.6484 0.1312 22 9 2.9056 -3.6947 0.9309 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1566 -1.4317 -1.5562 25 1 -2.1732 -2.7774 -2.2944 26 1 -3.7487 -3.7637 -3.8904 27 1 -2.5117 -6.3313 -4.9791 28 1 -5.1105 -6.4310 -5.3867 29 1 -5.0772 -4.6544 -5.4912 30 1 -0.4613 -5.6866 -1.2931 31 1 1.5249 -5.7625 0.1521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144475310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:44 Heat of formation + Delta-G solvation = -68.385163 kcal Electronic energy + Delta-G solvation = -18663.082460 eV Core-core repulsion = 15290.295645 eV Total energy + Delta-G solvation = -3372.786815 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 327.001 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -49.19992 -41.25281 -38.98883 -36.18539 -35.66494 -35.09841 -31.80895 -31.62454 -30.04567 -27.65938 -27.18329 -23.79827 -23.43211 -21.77709 -20.63783 -19.37799 -18.75296 -17.98665 -17.60788 -16.96303 -16.39321 -15.99732 -15.84138 -15.65360 -14.92751 -14.72915 -14.63787 -14.45809 -13.95139 -13.62997 -13.52296 -13.36648 -12.97242 -12.83815 -12.78214 -12.48854 -12.04408 -11.56004 -11.23449 -11.09965 -10.99175 -10.84712 -10.67714 -10.44340 -9.55376 -8.88606 -8.58984 -6.45664 -0.06422 0.67857 0.84757 1.05485 1.39487 1.47492 1.53942 2.19859 2.22244 2.26413 2.65984 3.44747 3.48883 3.91427 4.01070 4.11553 4.25003 4.30013 4.51917 4.64704 4.92345 4.97033 4.99957 5.17450 5.21387 5.31920 5.60209 5.73002 5.75211 5.94896 6.11753 6.45472 6.65825 6.74191 6.80812 7.24133 8.23919 Molecular weight = 327.00amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002597 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.864105 B =10779.854692 C =11790.197801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.043 3.957 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.256 1.256 6 H -0.262 1.262 7 C -0.490 4.490 8 H 0.070 0.930 9 C 0.073 3.927 10 C -0.178 4.178 11 C 0.151 3.849 12 N -0.652 5.652 13 C 0.532 3.468 14 O -0.571 6.571 15 C -0.187 4.187 16 C -0.068 4.068 17 C -0.045 4.045 18 Br -0.168 7.168 19 C -0.212 4.212 20 C -0.108 4.108 21 C -0.070 4.070 22 F -0.169 7.169 23 H 0.295 0.705 24 H 0.129 0.871 25 H 0.422 0.578 26 H 0.171 0.829 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 -4.585 -12.566 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.174 4.174 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.187 1.187 7 C -0.518 4.518 8 H 0.088 0.912 9 C 0.069 3.931 10 C -0.200 4.200 11 C 0.057 3.943 12 N -0.296 5.296 13 C 0.324 3.676 14 O -0.451 6.451 15 C -0.210 4.210 16 C -0.089 4.089 17 C -0.159 4.159 18 Br -0.087 7.087 19 C -0.233 4.233 20 C -0.128 4.128 21 C -0.090 4.090 22 F -0.149 7.149 23 H 0.106 0.894 24 H 0.146 0.854 25 H 0.260 0.740 26 H 0.189 0.811 27 H 0.136 0.864 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.136 0.864 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.845 -5.108 -13.291 20.570 hybrid contribution 0.568 0.851 0.889 1.355 sum -14.276 -4.257 -12.403 19.384 Atomic orbital electron populations 1.69799 1.08551 1.31101 1.33910 1.26663 0.95703 1.04101 0.90927 0.85122 0.79087 0.75913 0.79423 1.19045 1.18017 1.18653 1.19674 0.97903 0.92197 1.42067 0.91159 1.17737 0.92948 0.91577 0.90861 1.20866 0.99110 0.96485 1.03550 1.17621 0.89439 0.93939 0.93311 1.43328 1.24529 1.24885 1.36863 1.19364 0.87863 0.81065 0.79355 1.90793 1.48260 1.38626 1.67426 1.22668 0.96321 1.02507 0.99476 1.23604 0.96662 0.96807 0.91779 1.23935 0.96894 1.10264 0.84812 1.97479 1.95562 1.99351 1.16337 1.20298 1.01013 0.96598 1.05422 1.20639 0.96507 0.96127 0.99497 1.18181 0.91832 0.95660 1.03342 1.91231 1.53540 1.97387 1.72720 0.89388 0.85381 0.74042 0.81142 0.86374 0.83942 0.84525 0.86416 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.73 10.94 21.82 0.24 -38.49 16 2 C 0.04 2.07 5.16 85.25 0.44 2.51 16 3 Si 0.98 36.83 29.59 68.60 2.03 38.86 16 4 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.49 -26.64 8.77 23.43 0.21 -26.44 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.07 3.97 5.57 -21.26 -0.12 3.85 16 10 C -0.18 -8.88 8.59 22.84 0.20 -8.69 16 11 C 0.15 6.76 6.25 38.11 0.24 7.00 16 12 N -0.65 -22.30 5.33 -306.87 -1.63 -23.93 16 13 C 0.53 17.16 7.49 86.56 0.65 17.81 16 14 O -0.57 -23.37 13.95 -4.14 -0.06 -23.43 16 15 C -0.19 -3.70 9.64 23.42 0.23 -3.47 16 16 C -0.07 -1.19 9.15 24.52 0.22 -0.97 16 17 C -0.05 -0.46 7.05 71.23 0.50 0.04 16 18 Br -0.17 -2.70 33.92 -20.37 -0.69 -3.39 16 19 C -0.21 -9.81 8.65 22.58 0.20 -9.61 16 20 C -0.11 -5.17 10.00 22.25 0.22 -4.95 16 21 C -0.07 -3.71 7.31 22.90 0.17 -3.55 16 22 F -0.17 -9.00 16.72 44.97 0.75 -8.25 16 23 H 0.30 12.41 8.30 -92.71 -0.77 11.64 16 24 H 0.13 6.32 6.18 -2.91 -0.02 6.30 16 25 H 0.42 11.41 8.80 -92.71 -0.82 10.60 16 26 H 0.17 1.93 7.87 -2.91 -0.02 1.91 16 27 H 0.12 2.64 7.49 -2.91 -0.02 2.61 16 28 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.14 0.75 7.82 -2.39 -0.02 0.73 16 30 H 0.12 5.24 6.47 -2.91 -0.02 5.22 16 31 H 0.13 5.32 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -66.57 302.26 4.15 -62.42 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.37 Total: 22.67 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 3.15 Total: -26.45 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -1.40 Total: -62.43 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 0.75 Total: -8.25 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 35 Polarization: -2.70 SS G_CDS: -0.69 Total: -3.39 kcal Total: -66.57 4.15 -62.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144475310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.970 kcal (2) G-P(sol) polarization free energy of solvation -66.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds