Wall clock time and date at job start Tue Mar 31 2020 14:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48505 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46723 * 299.99881 * 3 2 1 6 6 H 1.48501 * 109.47152 * 60.00246 * 3 2 1 7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 9 14 14 C 1.38377 * 119.85016 * 259.72382 * 13 12 11 15 15 C 1.37926 * 120.15749 * 179.76793 * 14 13 12 16 16 C 1.39650 * 119.86791 * 0.50239 * 15 14 13 17 17 C 1.47735 * 120.14402 * 179.76719 * 16 15 14 18 18 O 1.21468 * 119.99972 * 179.97438 * 17 16 15 19 19 O 1.34713 * 119.99873 * 359.97438 * 17 16 15 20 20 C 1.39587 * 119.71229 * 359.75497 * 16 15 14 21 21 C 1.38060 * 119.83690 * 359.97438 * 20 16 15 22 22 Br 1.89100 * 119.93562 * 179.97438 * 21 20 16 23 23 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 25 25 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 26 26 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 27 27 H 1.07997 * 119.92106 * 0.02562 * 14 13 12 28 28 H 1.08004 * 120.06873 * 180.23486 * 15 14 13 29 29 H 0.96695 * 116.99796 * 179.97438 * 19 17 16 30 30 H 1.08006 * 120.08731 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0016 14 6 2.4807 -6.7240 -1.1828 15 6 3.3796 -7.7700 -1.1915 16 6 3.9952 -8.1678 -0.0028 17 6 4.9551 -9.2908 -0.0041 18 8 5.4894 -9.6343 1.0313 19 8 5.2378 -9.9339 -1.1536 20 6 3.6998 -7.4996 1.1866 21 6 2.8024 -6.4504 1.1804 22 35 2.3997 -5.5436 2.7902 23 1 -0.4850 0.8401 0.0004 24 1 2.9190 -3.6477 -0.0009 25 1 0.5896 -4.9744 0.8887 26 1 0.5902 -4.9740 -0.8913 27 1 2.0012 -6.4182 -2.1009 28 1 3.6037 -8.2833 -2.1149 29 1 5.8722 -10.6620 -1.1046 30 1 4.1727 -7.8019 2.1094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060421.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:49 Heat of formation + Delta-G solvation = -103.151492 kcal Electronic energy + Delta-G solvation = -18732.734182 eV Core-core repulsion = 15346.066996 eV Total energy + Delta-G solvation = -3386.667185 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 326.994 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70981 -39.24288 -37.17498 -36.38880 -34.01991 -32.53428 -32.29972 -31.12149 -29.38203 -27.32822 -25.62888 -23.29145 -22.65877 -21.05723 -19.71710 -18.36046 -17.76054 -17.33186 -15.92205 -15.76381 -15.56867 -15.23606 -14.73079 -14.33338 -13.99100 -13.80962 -13.29943 -13.18215 -13.08694 -12.31899 -11.89817 -11.65034 -11.58002 -11.28551 -11.14192 -10.96597 -10.92304 -10.86820 -10.48058 -10.20712 -9.97534 -9.27034 -8.87818 -8.86831 -7.63042 -7.56507 -6.20013 -4.64904 0.33734 0.92802 1.60083 2.20851 2.71062 3.12770 3.21245 3.25545 3.38326 4.10906 4.50717 4.56727 4.59396 4.71026 4.83711 4.99082 5.09944 5.33719 5.57590 5.67409 5.84353 5.88165 5.95454 6.14345 6.25076 6.43627 6.45895 7.42986 7.56843 7.86861 8.01519 8.30811 9.01823 9.48355 10.57887 10.76088 Molecular weight = 326.99amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.003753 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.470345 B = 7459.547798 C = 8040.368646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.558 3.442 10 O -0.578 6.578 11 N -0.756 5.756 12 C 0.157 3.843 13 C -0.021 4.021 14 C -0.114 4.114 15 C -0.048 4.048 16 C -0.133 4.133 17 C 0.532 3.468 18 O -0.513 6.513 19 O -0.511 6.511 20 C -0.028 4.028 21 C -0.096 4.096 22 Br -0.021 7.021 23 H 0.268 0.732 24 H 0.381 0.619 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.415 0.585 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.695 -16.995 -0.234 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.363 3.637 10 O -0.461 6.461 11 N -0.412 5.412 12 C 0.032 3.968 13 C -0.024 4.024 14 C -0.133 4.133 15 C -0.066 4.066 16 C -0.136 4.136 17 C 0.376 3.624 18 O -0.403 6.403 19 O -0.323 6.323 20 C -0.048 4.048 21 C -0.177 4.177 22 Br 0.066 6.934 23 H 0.078 0.922 24 H 0.212 0.788 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.274 0.726 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.296 -16.301 0.645 17.871 hybrid contribution 1.495 0.022 -0.312 1.528 sum 8.791 -16.279 0.333 18.504 Atomic orbital electron populations 1.70024 1.07024 1.27161 1.35412 1.25693 0.94607 1.00246 0.92621 0.86334 0.80536 0.81800 0.78206 1.18764 1.20181 1.20170 1.20883 0.93619 0.89157 1.54230 0.91369 1.18216 0.87173 0.82113 0.76243 1.90606 1.14049 1.86495 1.54920 1.46120 1.08493 1.03604 1.83027 1.20046 0.92046 0.81965 1.02754 1.20558 0.94621 0.95671 0.91551 1.21197 0.98417 0.95631 0.98065 1.21562 0.92946 0.94742 0.97394 1.18902 1.01539 0.98025 0.95113 1.20774 0.79656 0.81208 0.80718 1.90900 1.50704 1.65297 1.33387 1.84550 1.62418 1.48780 1.36550 1.21163 0.93766 0.91834 0.98017 1.21757 1.02598 0.99542 0.93758 1.96835 1.93711 1.76313 1.26584 0.92162 0.78766 0.90939 0.91645 0.83789 0.83808 0.72637 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.71 11.83 55.55 0.66 -22.05 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.96 29.56 -169.99 -5.02 14.93 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -15.02 9.54 -35.63 -0.34 -15.36 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.38 7.75 -12.99 -0.10 15.28 16 10 O -0.58 -18.22 15.02 5.20 0.08 -18.14 16 11 N -0.76 -16.17 5.54 -62.90 -0.35 -16.52 16 12 C 0.16 2.84 5.11 -5.19 -0.03 2.82 16 13 C -0.02 -0.30 5.26 -104.50 -0.55 -0.85 16 14 C -0.11 -1.31 9.65 -39.64 -0.38 -1.69 16 15 C -0.05 -0.48 9.62 -39.17 -0.38 -0.86 16 16 C -0.13 -1.50 5.87 -104.99 -0.62 -2.12 16 17 C 0.53 5.68 8.27 34.61 0.29 5.97 16 18 O -0.51 -6.86 17.13 -19.24 -0.33 -7.19 16 19 O -0.51 -3.73 12.68 -40.53 -0.51 -4.24 16 20 C -0.03 -0.34 9.33 -39.14 -0.37 -0.71 16 21 C -0.10 -1.34 6.21 -39.58 -0.25 -1.58 16 22 Br -0.02 -0.31 31.98 -68.01 -2.17 -2.48 16 23 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 24 H 0.38 7.42 8.44 -40.82 -0.34 7.07 16 25 H 0.07 1.43 7.13 -51.93 -0.37 1.05 16 26 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 27 H 0.14 1.45 8.03 -52.49 -0.42 1.02 16 28 H 0.14 1.10 7.61 -52.48 -0.40 0.70 16 29 H 0.41 1.14 9.11 45.56 0.42 1.56 16 30 H 0.15 1.74 7.65 -52.48 -0.40 1.34 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -35.16 299.28 -7.44 -42.60 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -1.48 Total: 5.36 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.81 Total: 3.22 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.31 Total: -38.57 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.77 Total: -29.57 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.17 Total: -2.48 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.16 -7.44 -42.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060421.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.548 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds