Wall clock time and date at job start Tue Mar 31 2020 14:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86793 * 120.00465 * 2 1 4 4 H 1.48504 * 109.46811 * 269.99784 * 3 2 1 5 5 H 1.48502 * 109.47271 * 29.99247 * 3 2 1 6 6 H 1.48493 * 109.47659 * 149.99873 * 3 2 1 7 7 C 1.38885 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00217 * 179.97438 * 7 2 1 9 9 O 1.34794 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.34711 * 117.00153 * 179.97438 * 9 7 2 11 11 O 1.21495 * 119.99939 * 0.02562 * 10 9 7 12 12 C 1.47781 * 119.99651 * 179.97438 * 10 9 7 13 13 N 1.33020 * 120.17619 * 78.04606 * 12 10 9 14 14 C 1.31774 * 120.01508 * 180.02562 * 13 12 10 15 15 C 1.38980 * 120.37240 * 359.96961 * 14 13 12 16 16 N 1.31869 * 120.35594 * 359.77256 * 15 14 13 17 17 C 1.33067 * 119.98107 * 0.50622 * 16 15 14 18 18 C 1.47782 * 120.18792 * 179.74440 * 17 16 15 19 19 N 1.29042 * 124.86972 * 354.97359 * 18 17 16 20 20 C 1.33650 * 118.13002 * 180.02562 * 19 18 17 21 21 C 1.41388 * 128.78675 * 179.97438 * 20 19 18 22 22 C 1.36015 * 120.53387 * 179.97438 * 21 20 19 23 23 C 1.38870 * 120.83065 * 359.73006 * 22 21 20 24 24 C 1.37590 * 120.02835 * 0.56767 * 23 22 21 25 25 C 1.39430 * 120.03817 * 359.43233 * 24 23 22 26 26 S 1.75858 * 124.87163 * 174.99757 * 18 17 16 27 27 H 0.97003 * 119.99600 * 0.02562 * 1 2 3 28 28 H 1.07993 * 119.80968 * 179.97438 * 14 13 12 29 29 H 1.07994 * 119.81896 * 180.02562 * 15 14 13 30 30 H 1.08003 * 119.73082 * 0.02562 * 21 20 19 31 31 H 1.08007 * 119.58467 * 180.02562 * 22 21 20 32 32 H 1.08007 * 119.98527 * 180.28257 * 23 22 21 33 33 H 1.08006 * 119.98406 * 179.71446 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 2.4953 2.0462 -1.4001 5 1 1.4452 2.6527 0.6999 6 1 3.5453 1.4401 0.7000 7 6 2.0081 -1.2028 0.0005 8 1 3.0881 -1.2029 0.0001 9 8 1.3341 -2.3701 0.0005 10 6 2.0677 -3.5000 0.0005 11 8 3.2810 -3.4364 0.0010 12 6 1.3967 -4.8166 0.0011 13 7 0.8804 -5.3045 -1.1236 14 6 0.2823 -6.4787 -1.1193 15 6 0.1869 -7.2144 0.0558 16 7 0.6980 -6.7471 1.1781 17 6 1.3001 -5.5606 1.1911 18 6 1.8695 -5.0299 2.4474 19 7 1.7570 -5.5919 3.6035 20 6 2.3267 -4.9925 4.6535 21 6 2.3437 -5.4035 6.0063 22 6 2.9818 -4.6570 6.9473 23 6 3.6337 -3.4808 6.6009 24 6 3.6299 -3.0507 5.2939 25 6 2.9818 -3.8015 4.3140 26 16 2.7970 -3.5418 2.5812 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1360 -6.8714 -2.0342 29 1 -0.3048 -8.1759 0.0490 30 1 1.8467 -6.3181 6.2945 31 1 2.9855 -4.9856 7.9762 32 1 4.1399 -2.9009 7.3585 33 1 4.1333 -2.1334 5.0261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019231102.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:16 Heat of formation + Delta-G solvation = 23.209832 kcal Electronic energy + Delta-G solvation = -24161.506665 eV Core-core repulsion = 20472.225075 eV Total energy + Delta-G solvation = -3689.281590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.046 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.52535 -41.37749 -40.87316 -38.00695 -37.49384 -35.66117 -34.43185 -33.62797 -32.13167 -30.59050 -28.19751 -27.27050 -26.49803 -24.90976 -23.66232 -22.81917 -22.00264 -20.08280 -19.86841 -19.44157 -18.96976 -18.12403 -17.45683 -17.14579 -16.63063 -16.50553 -16.27945 -16.21543 -16.06190 -15.52771 -15.47283 -14.92568 -14.73695 -14.26330 -13.70250 -13.59177 -13.23083 -13.17959 -12.95100 -12.83275 -12.55903 -12.52401 -12.23095 -12.12020 -11.66236 -11.59234 -11.19442 -10.94476 -10.87475 -10.75585 -10.43477 -9.51408 -9.22270 -8.62526 -6.39937 -1.42069 -0.44957 -0.08132 0.02000 0.15484 0.57723 0.99015 1.26104 1.30712 1.46894 1.49393 1.81063 2.18447 2.35248 2.41028 2.67123 2.88192 2.94555 3.19411 3.29549 3.59626 3.84302 3.85187 4.03970 4.23717 4.24257 4.29707 4.41495 4.58263 4.86714 5.03006 5.07525 5.13055 5.22112 5.35063 5.66864 5.74015 5.88502 6.29308 6.32034 6.43161 6.80092 7.51100 8.57347 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009122 B = 0.006284 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.773224 B = 4454.651302 C = 7012.486084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.002 3.998 3 Si 1.015 2.985 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.257 1.257 7 C -0.408 4.408 8 H 0.092 0.908 9 O -0.212 6.212 10 C 0.437 3.563 11 O -0.531 6.531 12 C 0.081 3.919 13 N -0.433 5.433 14 C 0.083 3.917 15 C 0.091 3.909 16 N -0.418 5.418 17 C 0.154 3.846 18 C 0.101 3.899 19 N -0.430 5.430 20 C 0.037 3.963 21 C -0.063 4.063 22 C -0.099 4.099 23 C -0.073 4.073 24 C -0.095 4.095 25 C -0.208 4.208 26 S 0.117 5.883 27 H 0.282 0.718 28 H 0.242 0.758 29 H 0.247 0.753 30 H 0.153 0.847 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -11.013 10.075 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.200 4.200 3 Si 0.833 3.167 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.181 1.181 7 C -0.483 4.483 8 H 0.110 0.890 9 O -0.117 6.117 10 C 0.281 3.719 11 O -0.429 6.429 12 C -0.058 4.058 13 N -0.150 5.150 14 C -0.082 4.082 15 C -0.075 4.075 16 N -0.133 5.133 17 C 0.016 3.984 18 C -0.180 4.180 19 N -0.144 5.144 20 C -0.086 4.086 21 C -0.084 4.084 22 C -0.120 4.120 23 C -0.095 4.095 24 C -0.118 4.118 25 C -0.327 4.327 26 S 0.377 5.623 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.263 0.737 30 H 0.170 0.830 31 H 0.200 0.800 32 H 0.198 0.802 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.136 -10.476 9.400 14.236 hybrid contribution 0.186 0.485 0.079 0.525 sum 2.321 -9.991 9.479 13.966 Atomic orbital electron populations 1.70064 1.07935 1.29801 1.45157 1.26634 0.96807 1.02315 0.94237 0.84669 0.77991 0.74205 0.79862 1.18177 1.18293 1.18092 1.21543 0.92494 0.79983 1.54265 0.89029 1.84000 1.39699 1.13713 1.74330 1.20533 0.85920 0.85378 0.80040 1.90650 1.14704 1.87640 1.49875 1.20824 0.99269 0.94214 0.91528 1.68512 1.06086 1.14764 1.25601 1.25185 0.92309 0.88014 1.02706 1.25239 0.93186 1.02363 0.86675 1.68600 1.05716 1.08486 1.30533 1.19176 0.97588 0.92953 0.88679 1.24722 1.02933 0.96274 0.94030 1.66018 1.19003 1.31847 0.97515 1.19635 1.00629 0.93094 0.95216 1.20888 0.99080 1.01196 0.87283 1.21261 0.95664 0.94047 1.01005 1.21756 0.96789 0.96277 0.94657 1.20781 0.99068 0.99579 0.92357 1.24962 1.06733 1.01643 0.99398 1.87124 1.52118 1.22924 1.00118 0.90846 0.74149 0.73731 0.82966 0.79959 0.80222 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.86 13.67 21.65 0.30 -52.56 16 2 C 0.00 0.11 5.50 84.92 0.47 0.58 16 3 Si 1.02 42.65 29.55 68.60 2.03 44.68 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.41 -24.48 9.65 67.98 0.66 -23.83 16 8 H 0.09 5.50 6.86 -2.91 -0.02 5.48 16 9 O -0.21 -12.95 9.74 12.16 0.12 -12.84 16 10 C 0.44 24.01 4.71 70.35 0.33 24.34 16 11 O -0.53 -30.19 14.27 19.85 0.28 -29.91 16 12 C 0.08 3.78 6.66 42.08 0.28 4.06 16 13 N -0.43 -16.93 10.44 -183.53 -1.92 -18.84 16 14 C 0.08 2.00 11.22 84.88 0.95 2.95 16 15 C 0.09 2.03 11.22 84.87 0.95 2.98 16 16 N -0.42 -14.45 10.39 -183.44 -1.91 -16.35 16 17 C 0.15 6.64 6.78 42.08 0.29 6.93 16 18 C 0.10 4.59 7.32 87.63 0.64 5.23 16 19 N -0.43 -18.02 10.47 -181.00 -1.90 -19.92 16 20 C 0.04 1.35 6.93 40.10 0.28 1.63 16 21 C -0.06 -1.62 10.05 22.53 0.23 -1.40 16 22 C -0.10 -1.77 9.93 21.90 0.22 -1.55 16 23 C -0.07 -1.38 10.04 22.27 0.22 -1.16 16 24 C -0.10 -2.71 10.07 22.40 0.23 -2.48 16 25 C -0.21 -7.89 6.55 23.01 0.15 -7.74 16 26 S 0.12 5.50 18.32 -56.49 -1.04 4.46 16 27 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.24 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.25 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -87.83 318.32 3.05 -84.78 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.19 Total: 5.94 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 5.89 Total: 10.55 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -5.42 Total: -107.68 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: 0.40 Total: -42.74 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 5.50 SS G_CDS: -1.04 Total: 4.46 kcal Total: -87.83 3.05 -84.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019231102.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.988 kcal (2) G-P(sol) polarization free energy of solvation -87.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds