Wall clock time and date at job start Tue Mar 31 2020 15:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00221 * 2 1 4 4 H 1.48494 * 109.47419 * 240.00252 * 3 2 1 5 5 H 1.48497 * 109.46824 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46975 * 120.00221 * 3 2 1 7 7 C 1.37879 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00327 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99487 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99925 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.46713 * 179.97438 * 13 11 10 15 15 C 1.76199 * 99.99916 * 179.97438 * 14 13 11 16 16 N 1.31028 * 125.07918 * 0.02677 * 15 14 13 17 17 C 1.35955 * 109.63149 * 179.97438 * 16 15 14 18 18 C 1.39738 * 133.31662 * 180.02562 * 17 16 15 19 19 C 1.37852 * 119.78811 * 179.97438 * 18 17 16 20 20 F 1.35106 * 119.78421 * 180.02562 * 19 18 17 21 21 C 1.39065 * 120.42999 * 0.02562 * 19 18 17 22 22 F 1.35093 * 119.82513 * 179.97438 * 21 19 18 23 23 C 1.38116 * 120.35660 * 359.97438 * 21 19 18 24 24 C 1.38685 * 119.86547 * 0.02562 * 23 21 19 25 25 N 1.36655 * 125.07950 * 180.27823 * 15 14 13 26 26 H 0.96998 * 126.39342 * 0.09848 * 25 15 14 27 27 H 0.97003 * 119.99662 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47055 * 59.99985 * 9 7 2 29 29 H 1.08995 * 109.47316 * 300.00064 * 9 7 2 30 30 H 0.97008 * 119.99500 * 359.97438 * 10 9 7 31 31 H 1.09001 * 109.47519 * 59.99704 * 13 11 10 32 32 H 1.09005 * 109.47308 * 299.99283 * 13 11 10 33 33 H 1.08001 * 120.10640 * 359.97153 * 18 17 16 34 34 H 1.07996 * 120.06947 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5612 -5.1049 -0.0011 13 6 2.7329 -6.0288 -0.0005 14 16 1.8278 -7.5963 -0.0006 15 6 3.1775 -8.7289 -0.0007 16 7 4.4437 -8.3916 -0.0001 17 6 5.2147 -9.5113 0.0003 18 6 6.5958 -9.7243 0.0013 19 6 7.0903 -11.0111 0.0019 20 9 8.4256 -11.2169 0.0035 21 6 6.2237 -12.0987 0.0010 22 9 6.7216 -13.3545 0.0011 23 6 4.8566 -11.9019 -0.0001 24 6 4.3444 -10.6131 -0.0007 25 7 3.0603 -10.0904 -0.0062 26 1 2.2330 -10.5968 -0.0121 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 3.1566 -3.4354 -0.0009 31 1 3.3590 -5.9712 0.8900 32 1 3.3602 -5.9710 -0.8901 33 1 7.2736 -8.8835 0.0016 34 1 4.1878 -12.7499 -0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027076919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:18 Heat of formation + Delta-G solvation = -57.376305 kcal Electronic energy + Delta-G solvation = -23033.559559 eV Core-core repulsion = 18922.387057 eV Total energy + Delta-G solvation = -4111.172502 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.80182 -48.87190 -42.44739 -38.97810 -37.23856 -34.38963 -33.72023 -32.49805 -30.57545 -30.13420 -29.38450 -26.91732 -24.41519 -23.10594 -22.64777 -22.19874 -20.13146 -19.42438 -18.61714 -17.99808 -17.19613 -16.76354 -16.75634 -16.23774 -15.84615 -15.76845 -15.45444 -15.29445 -15.20934 -15.19564 -14.63520 -14.31023 -13.92856 -13.81467 -13.42214 -13.07497 -12.83582 -12.18263 -12.05135 -11.88517 -11.71610 -11.32607 -11.09079 -10.92475 -10.91268 -10.62712 -10.38766 -9.51706 -9.43983 -9.32021 -8.85985 -8.83179 -8.09174 -7.77799 -6.23556 -4.31261 0.10417 0.62508 0.67146 1.72581 2.00144 2.46706 3.02944 3.03775 3.21921 3.27070 3.28218 3.37972 3.73049 3.83402 3.85233 4.29324 4.40481 4.52996 4.65897 4.93632 5.03448 5.13046 5.15191 5.19607 5.34895 5.37039 5.45798 5.81316 6.19075 6.57447 7.12639 7.14582 7.19742 7.39203 7.54185 7.87010 8.39324 8.61354 8.85884 9.35243 10.86427 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.002042 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.897325 B =13706.692244 C =14808.142215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.699 5.699 11 C 0.515 3.485 12 O -0.544 6.544 13 C -0.142 4.142 14 S 0.087 5.913 15 C 0.267 3.733 16 N -0.491 5.491 17 C 0.081 3.919 18 C -0.074 4.074 19 C 0.067 3.933 20 F -0.125 7.125 21 C 0.082 3.918 22 F -0.124 7.124 23 C -0.113 4.113 24 C 0.066 3.934 25 N -0.579 5.579 26 H 0.432 0.568 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.395 0.605 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.156 0.844 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.446 -23.956 -0.011 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.347 5.347 11 C 0.297 3.703 12 O -0.424 6.424 13 C -0.294 4.294 14 S 0.318 5.682 15 C -0.107 4.107 16 N -0.217 5.217 17 C -0.041 4.041 18 C -0.095 4.095 19 C 0.044 3.956 20 F -0.104 7.104 21 C 0.060 3.940 22 F -0.103 7.103 23 C -0.135 4.135 24 C -0.046 4.046 25 N -0.193 5.193 26 H 0.272 0.728 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.228 0.772 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.174 0.826 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.624 -23.300 -0.012 24.845 hybrid contribution 1.910 -0.118 -0.002 1.913 sum 10.534 -23.418 -0.015 25.678 Atomic orbital electron populations 1.69955 1.06124 1.27577 1.48501 1.24948 0.94941 0.99509 0.94548 0.86446 0.79406 0.82144 0.78765 1.20002 1.21042 1.20007 1.21161 0.93313 0.90283 1.53763 0.91783 1.19206 0.88167 0.81591 0.98080 1.46396 1.11686 1.05409 1.71255 1.19472 0.88399 0.83974 0.78466 1.90719 1.16126 1.84273 1.51237 1.23868 1.02560 0.93528 1.09481 1.86535 0.96909 0.94009 1.90707 1.26338 0.98668 0.85920 0.99774 1.71130 0.98667 1.27204 1.24659 1.18686 0.92963 0.88742 1.03704 1.19978 0.93061 0.95451 1.01030 1.17083 0.77693 0.92494 1.08298 1.91549 1.29036 1.95567 1.94231 1.16985 0.90866 0.78944 1.07254 1.91542 1.87693 1.36971 1.94069 1.19538 0.93022 0.95110 1.05855 1.18442 0.85129 0.94702 1.06346 1.42874 1.07290 1.05732 1.63440 0.72754 0.92283 0.95168 0.95173 0.77161 0.85704 0.85706 0.82644 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 13.29 55.43 0.74 -24.55 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.29 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.55 -14.23 9.28 -34.44 -0.32 -14.55 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.27 5.43 -5.20 -0.03 6.24 16 10 N -0.70 -13.54 5.55 -61.48 -0.34 -13.89 16 11 C 0.51 9.26 7.85 -10.99 -0.09 9.17 16 12 O -0.54 -11.87 15.86 5.56 0.09 -11.78 16 13 C -0.14 -1.83 5.64 36.00 0.20 -1.62 16 14 S 0.09 1.04 21.45 -107.50 -2.31 -1.27 16 15 C 0.27 2.90 8.20 -88.44 -0.73 2.17 16 16 N -0.49 -5.95 10.57 -10.89 -0.12 -6.06 16 17 C 0.08 0.88 7.22 -84.66 -0.61 0.27 16 18 C -0.07 -0.70 10.07 -39.16 -0.39 -1.10 16 19 C 0.07 0.64 7.29 -39.42 -0.29 0.35 16 20 F -0.13 -1.28 17.16 2.25 0.04 -1.24 16 21 C 0.08 0.73 7.30 -39.32 -0.29 0.44 16 22 F -0.12 -1.18 17.17 2.25 0.04 -1.14 16 23 C -0.11 -0.85 10.03 -39.46 -0.40 -1.25 16 24 C 0.07 0.61 7.29 -83.80 -0.61 0.00 16 25 N -0.58 -4.83 6.28 -10.55 -0.07 -4.89 16 26 H 0.43 2.20 8.96 -40.82 -0.37 1.83 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.40 6.45 8.32 -40.82 -0.34 6.12 16 31 H 0.12 1.42 8.14 -51.92 -0.42 1.00 16 32 H 0.12 1.42 8.14 -51.91 -0.42 1.00 16 33 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 331.11 15.07 4.99 4.99 Total: -1.00 -31.75 331.11 -8.37 -40.12 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -2.78 Total: 2.68 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.64 Total: 1.76 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.21 Total: -49.39 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.08 Total: -2.38 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.31 Total: -1.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.75 -8.37 -40.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027076919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.253 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds