Wall clock time and date at job start Tue Mar 31 2020 15:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00221 * 2 1 4 4 H 1.48494 * 109.47419 * 240.00252 * 3 2 1 5 5 H 1.48497 * 109.46824 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46975 * 120.00221 * 3 2 1 7 7 C 1.37879 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00327 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99487 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99925 * 180.02562 * 11 10 9 14 14 S 1.81003 * 109.46713 * 179.97438 * 13 11 10 15 15 C 1.76199 * 99.99916 * 179.97438 * 14 13 11 16 16 N 1.31028 * 125.07918 * 0.02677 * 15 14 13 17 17 C 1.35955 * 109.63149 * 179.97438 * 16 15 14 18 18 C 1.39738 * 133.31662 * 180.02562 * 17 16 15 19 19 C 1.37852 * 119.78811 * 179.97438 * 18 17 16 20 20 F 1.35106 * 119.78421 * 180.02562 * 19 18 17 21 21 C 1.39065 * 120.42999 * 0.02562 * 19 18 17 22 22 F 1.35093 * 119.82513 * 179.97438 * 21 19 18 23 23 C 1.38116 * 120.35660 * 359.97438 * 21 19 18 24 24 C 1.38685 * 119.86547 * 0.02562 * 23 21 19 25 25 N 1.36655 * 125.07950 * 180.27823 * 15 14 13 26 26 H 0.96998 * 126.39342 * 0.09848 * 25 15 14 27 27 H 0.97003 * 119.99662 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47055 * 59.99985 * 9 7 2 29 29 H 1.08995 * 109.47316 * 300.00064 * 9 7 2 30 30 H 0.97008 * 119.99500 * 359.97438 * 10 9 7 31 31 H 1.09001 * 109.47519 * 59.99704 * 13 11 10 32 32 H 1.09005 * 109.47308 * 299.99283 * 13 11 10 33 33 H 1.08001 * 120.10640 * 359.97153 * 18 17 16 34 34 H 1.07996 * 120.06947 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5612 -5.1049 -0.0011 13 6 2.7329 -6.0288 -0.0005 14 16 1.8278 -7.5963 -0.0006 15 6 3.1775 -8.7289 -0.0007 16 7 4.4437 -8.3916 -0.0001 17 6 5.2147 -9.5113 0.0003 18 6 6.5958 -9.7243 0.0013 19 6 7.0903 -11.0111 0.0019 20 9 8.4256 -11.2169 0.0035 21 6 6.2237 -12.0987 0.0010 22 9 6.7216 -13.3545 0.0011 23 6 4.8566 -11.9019 -0.0001 24 6 4.3444 -10.6131 -0.0007 25 7 3.0603 -10.0904 -0.0062 26 1 2.2330 -10.5968 -0.0121 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 3.1566 -3.4354 -0.0009 31 1 3.3590 -5.9712 0.8900 32 1 3.3602 -5.9710 -0.8901 33 1 7.2736 -8.8835 0.0016 34 1 4.1878 -12.7499 -0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027076919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:18 Heat of formation + Delta-G solvation = -78.632980 kcal Electronic energy + Delta-G solvation = -23034.481318 eV Core-core repulsion = 18922.387057 eV Total energy + Delta-G solvation = -4112.094261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.53256 -49.60976 -43.19298 -40.55925 -37.95020 -36.21478 -34.49182 -34.38941 -31.68561 -31.03787 -30.19988 -28.75020 -25.20614 -24.62332 -23.76142 -22.95617 -21.67170 -20.25442 -19.46613 -18.92189 -18.61021 -17.62258 -17.57869 -17.48602 -17.21588 -16.81864 -16.76148 -16.31509 -16.21140 -16.03487 -15.93703 -15.24464 -14.99249 -14.67032 -14.58494 -14.40686 -14.12718 -13.98671 -13.51731 -12.93489 -12.88860 -12.67543 -12.55208 -12.24215 -12.07552 -11.87224 -11.50821 -11.41159 -11.04366 -10.79472 -10.13456 -9.89611 -9.54554 -8.65964 -8.28353 -6.44368 -0.60084 -0.24867 -0.09251 0.76080 1.24054 1.45404 1.48385 1.56247 1.56588 1.76489 2.29468 2.30239 2.49664 2.69626 3.03431 3.07037 3.19331 3.68167 3.75167 3.83751 4.02030 4.04352 4.21657 4.33589 4.53030 4.67293 4.78415 5.07786 5.10073 5.24780 5.43664 5.48272 5.63052 5.84202 5.97278 6.36573 6.64546 6.74891 7.21152 7.35770 8.83226 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.002042 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.897325 B =13706.692244 C =14808.142215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.696 5.696 11 C 0.516 3.484 12 O -0.585 6.585 13 C -0.129 4.129 14 S 0.082 5.918 15 C 0.263 3.737 16 N -0.510 5.510 17 C 0.056 3.944 18 C -0.074 4.074 19 C 0.061 3.939 20 F -0.132 7.132 21 C 0.077 3.923 22 F -0.127 7.127 23 C -0.096 4.096 24 C 0.068 3.932 25 N -0.563 5.563 26 H 0.447 0.553 27 H 0.269 0.731 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.413 0.587 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.164 0.836 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 -24.956 -0.014 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.346 5.346 11 C 0.301 3.699 12 O -0.467 6.467 13 C -0.281 4.281 14 S 0.313 5.687 15 C -0.112 4.112 16 N -0.236 5.236 17 C -0.066 4.066 18 C -0.096 4.096 19 C 0.039 3.961 20 F -0.111 7.111 21 C 0.055 3.945 22 F -0.106 7.106 23 C -0.117 4.117 24 C -0.045 4.045 25 N -0.179 5.179 26 H 0.291 0.709 27 H 0.078 0.922 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.249 0.751 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.182 0.818 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.466 -24.349 -0.014 26.503 hybrid contribution 1.351 0.047 -0.002 1.351 sum 11.816 -24.302 -0.016 27.023 Atomic orbital electron populations 1.70113 1.08147 1.28618 1.49846 1.26013 0.95760 1.03757 0.93930 0.85246 0.77934 0.76836 0.79460 1.18738 1.21248 1.18747 1.21586 0.94387 0.90537 1.52999 0.89734 1.18622 0.88551 0.83794 0.94674 1.46082 1.11712 1.04962 1.71861 1.20206 0.88702 0.84509 0.76499 1.90701 1.18461 1.84988 1.52538 1.23652 1.01098 0.91876 1.11429 1.86586 0.97139 0.93638 1.91330 1.26002 0.97987 0.86611 1.00566 1.71042 0.99217 1.28244 1.25104 1.18921 0.93654 0.89096 1.04891 1.20038 0.92918 0.95782 1.00819 1.17190 0.77515 0.92828 1.08616 1.91531 1.29585 1.95609 1.94327 1.17095 0.91353 0.78618 1.07429 1.91538 1.87818 1.37120 1.94124 1.19752 0.92797 0.95438 1.03760 1.18551 0.85004 0.94885 1.06094 1.42784 1.07840 1.04949 1.62330 0.70944 0.92249 0.98821 0.98828 0.75119 0.83686 0.83684 0.81820 0.80237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.98 41.22 29.54 68.60 2.03 43.24 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 7 C -0.56 -29.09 9.28 25.60 0.24 -28.85 16 8 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 9 C 0.27 13.84 5.43 85.63 0.46 14.30 16 10 N -0.70 -27.07 5.55 -466.81 -2.59 -29.66 16 11 C 0.52 18.56 7.85 87.66 0.69 19.25 16 12 O -0.58 -26.19 15.86 -3.02 -0.05 -26.24 16 13 C -0.13 -3.13 5.64 71.23 0.40 -2.73 16 14 S 0.08 1.86 21.45 -56.49 -1.21 0.65 16 15 C 0.26 5.23 8.20 179.59 1.47 6.70 16 16 N -0.51 -11.44 10.57 -188.38 -1.99 -13.43 16 17 C 0.06 1.12 7.22 39.39 0.28 1.40 16 18 C -0.07 -1.32 10.07 22.54 0.23 -1.09 16 19 C 0.06 1.07 7.29 22.38 0.16 1.24 16 20 F -0.13 -2.57 17.16 44.97 0.77 -1.79 16 21 C 0.08 1.22 7.30 22.44 0.16 1.38 16 22 F -0.13 -2.17 17.17 44.97 0.77 -1.40 16 23 C -0.10 -1.17 10.03 22.35 0.22 -0.94 16 24 C 0.07 1.07 7.29 38.70 0.28 1.36 16 25 N -0.56 -8.05 6.28 -187.30 -1.18 -9.23 16 26 H 0.45 3.37 8.96 -92.71 -0.83 2.54 16 27 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.41 13.02 8.32 -92.70 -0.77 12.25 16 31 H 0.15 2.99 8.14 -2.40 -0.02 2.97 16 32 H 0.15 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -70.27 331.11 1.51 -68.76 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -0.40 Total: 10.52 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 5.07 Total: 12.78 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -5.47 Total: -106.51 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 1.54 Total: -3.19 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.21 Total: 0.65 kcal Total: -70.27 1.51 -68.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027076919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.876 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds