Wall clock time and date at job start Tue Mar 31 2020 15:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09001 * 108.60833 * 34.99332 * 14 13 11 16 16 C 1.51862 * 108.65984 * 153.02961 * 14 13 11 17 17 C 1.53544 * 108.96616 * 181.36314 * 16 14 13 18 18 S 1.81617 * 107.27177 * 287.32724 * 17 16 14 19 19 C 1.76457 * 102.60971 * 46.40105 * 18 17 16 20 20 C 1.39818 * 117.70486 * 167.19627 * 19 18 17 21 21 F 1.35099 * 119.70345 * 359.52323 * 20 19 18 22 22 C 1.37897 * 120.59309 * 179.54350 * 20 19 18 23 23 C 1.38363 * 119.48052 * 359.88686 * 22 20 19 24 24 C 1.37730 * 120.02159 * 0.32411 * 23 22 20 25 25 C 1.37922 * 122.27572 * 346.99027 * 19 18 17 26 26 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 28 28 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 29 29 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 30 30 H 1.09003 * 109.55805 * 301.20820 * 16 14 13 31 31 H 1.08997 * 109.55492 * 61.51726 * 16 14 13 32 32 H 1.09007 * 109.89265 * 46.76912 * 17 16 14 33 33 H 1.09003 * 109.89533 * 167.80690 * 17 16 14 34 34 H 1.08002 * 120.25844 * 179.85978 * 22 20 19 35 35 H 1.08001 * 119.99363 * 180.30742 * 23 22 20 36 36 H 1.08000 * 119.44436 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.4160 -7.7410 -0.6267 16 6 3.3610 -8.6164 -0.6903 17 6 2.8150 -10.0509 -0.7324 18 16 2.8681 -10.6981 0.9637 19 6 2.1802 -9.3725 1.9035 20 6 1.8176 -9.6345 3.2282 21 9 1.9920 -10.8736 3.7374 22 6 1.2833 -8.6396 4.0195 23 6 1.1085 -7.3716 3.4939 24 6 1.4609 -7.1125 2.1879 25 6 1.9997 -8.1112 1.3753 26 1 -0.4849 0.8401 0.0004 27 1 3.1244 -3.7267 -0.9039 28 1 3.1244 -3.7361 0.8761 29 1 3.8007 -6.1835 -0.0260 30 1 3.5549 -8.2699 -1.7055 31 1 4.2853 -8.5947 -0.1130 32 1 1.7873 -10.0461 -1.0957 33 1 3.4359 -10.6651 -1.3847 34 1 1.0030 -8.8485 5.0414 35 1 0.6953 -6.5849 4.1077 36 1 1.3201 -6.1195 1.7871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028045671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:38 Heat of formation + Delta-G solvation = -49.459303 kcal Electronic energy + Delta-G solvation = -22498.923401 eV Core-core repulsion = 18922.014631 eV Total energy + Delta-G solvation = -3576.908770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.02820 -40.53323 -38.53423 -36.31016 -33.12004 -32.48805 -31.14721 -30.60585 -29.31325 -26.25246 -25.47695 -23.73895 -22.84260 -21.13646 -20.57202 -18.33507 -17.92124 -17.09779 -16.80875 -16.62523 -16.11623 -15.76603 -15.56220 -15.46224 -14.85713 -14.35279 -14.20309 -13.95690 -13.72603 -13.41767 -13.27843 -13.12774 -12.81395 -12.61005 -12.46903 -12.32657 -11.72251 -11.57265 -11.11019 -11.09022 -11.05675 -10.82662 -10.38542 -9.98106 -9.89431 -9.60992 -9.25697 -9.11062 -8.78631 -8.33670 -7.67087 -6.58266 -6.27784 -3.99400 0.84655 0.99106 1.22119 2.01579 2.82095 2.84162 3.19529 3.21515 3.25217 3.37595 3.57073 3.94096 4.14072 4.16271 4.39064 4.47114 4.71491 4.77883 4.85937 5.02504 5.07711 5.13636 5.18825 5.21057 5.39238 5.46454 5.52934 5.68620 5.69597 5.76547 5.92814 6.03051 6.12690 6.26945 6.44393 6.68467 7.46959 7.53668 8.28802 8.36271 9.17740 10.79502 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.002879 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.728735 B = 9723.785053 C =10476.416941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.156 4.156 11 C 0.533 3.467 12 O -0.509 6.509 13 N -0.731 5.731 14 C 0.184 3.816 15 H 0.105 0.895 16 C -0.130 4.130 17 C -0.104 4.104 18 S -0.106 6.106 19 C -0.110 4.110 20 C 0.105 3.895 21 F -0.133 7.133 22 C -0.137 4.137 23 C -0.093 4.093 24 C -0.101 4.101 25 C -0.073 4.073 26 H 0.270 0.730 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.403 0.597 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.994 -19.874 1.905 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.170 5.830 10 C -0.307 4.307 11 C 0.320 3.680 12 O -0.384 6.384 13 N -0.385 5.385 14 C 0.079 3.921 15 H 0.123 0.877 16 C -0.169 4.169 17 C -0.253 4.253 18 S 0.136 5.864 19 C -0.224 4.224 20 C 0.080 3.920 21 F -0.111 7.111 22 C -0.157 4.157 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.080 4.080 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.237 0.763 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.271 -21.265 2.159 22.275 hybrid contribution 1.915 2.365 -0.189 3.049 sum 8.186 -18.899 1.971 20.690 Atomic orbital electron populations 1.70002 1.05955 1.27666 1.46597 1.24989 0.95029 0.99042 0.94416 0.86224 0.79256 0.81195 0.78843 1.19912 1.20781 1.19896 1.22819 0.94885 0.91591 1.59333 0.90923 1.85393 1.04515 0.96337 1.96760 1.23569 1.06904 0.94938 1.05241 1.20409 0.86639 0.86428 0.74527 1.90738 1.15193 1.85433 1.47002 1.46131 1.10323 1.04339 1.77702 1.19381 0.98791 0.82263 0.91702 0.87713 1.21874 0.98941 0.93043 1.03052 1.23775 1.06223 0.99132 0.96179 1.85673 1.77764 1.20959 1.02010 1.21294 1.07389 0.97502 0.96212 1.17197 1.02801 0.80724 0.91251 1.91499 1.93328 1.39433 1.86846 1.21079 1.01374 0.92835 1.00427 1.21063 0.98540 0.96105 0.95603 1.21982 0.95698 1.00863 0.93524 1.19853 1.00079 0.91456 0.96650 0.92059 0.88948 0.88985 0.76259 0.88586 0.89472 0.88418 0.86219 0.84218 0.84401 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.47 13.22 55.49 0.73 -24.73 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.78 9.50 30.94 0.29 -14.48 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 9 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 10 C -0.16 -2.88 6.16 36.00 0.22 -2.66 16 11 C 0.53 8.81 6.00 -10.99 -0.07 8.74 16 12 O -0.51 -10.27 13.71 5.56 0.08 -10.20 16 13 N -0.73 -8.64 4.71 -55.81 -0.26 -8.91 16 14 C 0.18 2.05 2.36 -69.98 -0.17 1.89 16 15 H 0.11 1.34 7.52 -51.93 -0.39 0.95 16 16 C -0.13 -0.99 5.24 -27.03 -0.14 -1.13 16 17 C -0.10 -0.77 6.53 37.44 0.24 -0.53 16 18 S -0.11 -1.11 21.47 -107.50 -2.31 -3.42 16 19 C -0.11 -1.38 6.05 -39.11 -0.24 -1.62 16 20 C 0.10 1.34 7.24 -39.12 -0.28 1.06 16 21 F -0.13 -1.73 16.57 2.25 0.04 -1.69 16 22 C -0.14 -1.58 10.03 -39.66 -0.40 -1.98 16 23 C -0.09 -1.15 10.03 -39.72 -0.40 -1.55 16 24 C -0.10 -1.43 8.77 -39.27 -0.34 -1.77 16 25 C -0.07 -0.93 5.63 -104.55 -0.59 -1.52 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 28 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 29 H 0.40 3.63 8.59 -40.82 -0.35 3.28 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.15 2.41 4.01 -52.49 -0.21 2.20 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -32.81 331.21 -9.80 -42.60 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.87 Total: 2.78 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -1.96 Total: -13.58 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.47 Total: -33.64 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -4.52 Total: -7.08 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.81 -9.80 -42.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028045671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.859 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds