Wall clock time and date at job start Tue Mar 31 2020 15:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09001 * 108.60833 * 34.99332 * 14 13 11 16 16 C 1.51862 * 108.65984 * 153.02961 * 14 13 11 17 17 C 1.53544 * 108.96616 * 181.36314 * 16 14 13 18 18 S 1.81617 * 107.27177 * 287.32724 * 17 16 14 19 19 C 1.76457 * 102.60971 * 46.40105 * 18 17 16 20 20 C 1.39818 * 117.70486 * 167.19627 * 19 18 17 21 21 F 1.35099 * 119.70345 * 359.52323 * 20 19 18 22 22 C 1.37897 * 120.59309 * 179.54350 * 20 19 18 23 23 C 1.38363 * 119.48052 * 359.88686 * 22 20 19 24 24 C 1.37730 * 120.02159 * 0.32411 * 23 22 20 25 25 C 1.37922 * 122.27572 * 346.99027 * 19 18 17 26 26 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 28 28 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 29 29 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 30 30 H 1.09003 * 109.55805 * 301.20820 * 16 14 13 31 31 H 1.08997 * 109.55492 * 61.51726 * 16 14 13 32 32 H 1.09007 * 109.89265 * 46.76912 * 17 16 14 33 33 H 1.09003 * 109.89533 * 167.80690 * 17 16 14 34 34 H 1.08002 * 120.25844 * 179.85978 * 22 20 19 35 35 H 1.08001 * 119.99363 * 180.30742 * 23 22 20 36 36 H 1.08000 * 119.44436 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.4160 -7.7410 -0.6267 16 6 3.3610 -8.6164 -0.6903 17 6 2.8150 -10.0509 -0.7324 18 16 2.8681 -10.6981 0.9637 19 6 2.1802 -9.3725 1.9035 20 6 1.8176 -9.6345 3.2282 21 9 1.9920 -10.8736 3.7374 22 6 1.2833 -8.6396 4.0195 23 6 1.1085 -7.3716 3.4939 24 6 1.4609 -7.1125 2.1879 25 6 1.9997 -8.1112 1.3753 26 1 -0.4849 0.8401 0.0004 27 1 3.1244 -3.7267 -0.9039 28 1 3.1244 -3.7361 0.8761 29 1 3.8007 -6.1835 -0.0260 30 1 3.5549 -8.2699 -1.7055 31 1 4.2853 -8.5947 -0.1130 32 1 1.7873 -10.0461 -1.0957 33 1 3.4359 -10.6651 -1.3847 34 1 1.0030 -8.8485 5.0414 35 1 0.6953 -6.5849 4.1077 36 1 1.3201 -6.1195 1.7871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028045671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:37 Heat of formation + Delta-G solvation = -69.662978 kcal Electronic energy + Delta-G solvation = -22499.799498 eV Core-core repulsion = 18922.014631 eV Total energy + Delta-G solvation = -3577.784867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.01565 -41.63692 -39.66964 -37.27436 -34.57955 -34.16353 -32.02033 -31.66348 -30.62530 -27.74017 -27.03590 -24.56931 -23.80388 -22.05421 -21.81133 -19.84829 -19.20824 -18.13645 -17.93541 -17.75051 -17.20835 -16.86852 -16.78245 -16.65544 -16.39147 -15.85673 -15.42365 -15.00881 -14.65202 -14.58345 -14.50877 -14.20113 -13.87524 -13.67269 -13.59193 -13.32733 -13.16430 -12.88546 -12.75884 -12.61226 -12.41212 -11.93023 -11.74386 -11.18277 -11.12271 -11.06149 -10.79269 -10.37548 -10.27199 -9.78398 -8.65005 -8.51673 -8.34250 -6.11490 -0.10011 -0.01047 0.41790 1.25884 1.27187 1.44007 1.46500 1.51718 1.55822 2.11591 2.27884 2.44379 2.99299 3.00341 3.29680 3.38403 3.58598 3.74046 3.84201 3.91092 3.99542 4.17886 4.24014 4.30029 4.39942 4.52038 4.52351 4.60062 4.71648 4.80882 4.92250 4.96316 5.13542 5.25384 5.42316 5.42816 5.70912 6.20093 6.40621 7.07664 7.14629 8.74368 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.002879 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.728735 B = 9723.785053 C =10476.416941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.142 6.142 10 C -0.133 4.133 11 C 0.539 3.461 12 O -0.551 6.551 13 N -0.706 5.706 14 C 0.186 3.814 15 H 0.088 0.912 16 C -0.121 4.121 17 C -0.095 4.095 18 S -0.120 6.120 19 C -0.115 4.115 20 C 0.089 3.911 21 F -0.135 7.135 22 C -0.130 4.130 23 C -0.100 4.100 24 C -0.123 4.123 25 C -0.079 4.079 26 H 0.271 0.729 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.420 0.580 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.149 0.851 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.529 -20.725 1.396 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.085 5.915 10 C -0.284 4.284 11 C 0.326 3.674 12 O -0.429 6.429 13 N -0.360 5.360 14 C 0.080 3.920 15 H 0.106 0.894 16 C -0.160 4.160 17 C -0.244 4.244 18 S 0.122 5.878 19 C -0.229 4.229 20 C 0.065 3.935 21 F -0.114 7.114 22 C -0.150 4.150 23 C -0.120 4.120 24 C -0.143 4.143 25 C -0.086 4.086 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.258 0.742 30 H 0.139 0.861 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.170 0.830 34 H 0.182 0.818 35 H 0.166 0.834 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.860 -22.154 1.649 23.916 hybrid contribution 1.152 2.469 -0.023 2.725 sum 10.012 -19.684 1.626 22.144 Atomic orbital electron populations 1.70168 1.07909 1.28636 1.47978 1.26078 0.95910 1.03194 0.93774 0.85053 0.77852 0.75937 0.79489 1.18667 1.20551 1.18723 1.23187 0.95381 0.92162 1.58884 0.89923 1.85539 1.10025 0.98917 1.97049 1.23397 1.03837 0.94142 1.06988 1.20025 0.86336 0.86563 0.74463 1.90731 1.17048 1.85820 1.49255 1.45819 1.10641 1.03830 1.75671 1.19519 0.99475 0.81983 0.90984 0.89402 1.21878 0.97844 0.92223 1.04075 1.23932 1.07163 0.99159 0.94116 1.85720 1.77124 1.20653 1.04288 1.21455 1.06944 0.97931 0.96563 1.17449 1.03381 0.80880 0.91803 1.91488 1.93406 1.39601 1.86890 1.21306 1.00275 0.92006 1.01426 1.21218 0.98531 0.96942 0.95280 1.21935 0.97334 1.00354 0.94670 1.19934 1.00139 0.91371 0.97170 0.92025 0.86928 0.87266 0.74203 0.86105 0.88468 0.88257 0.83007 0.81761 0.83358 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.73 13.22 21.65 0.29 -54.45 16 2 C 0.02 0.86 5.49 84.86 0.47 1.32 16 3 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -30.27 9.50 67.96 0.65 -29.62 16 8 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 9 S -0.14 -7.51 20.57 -56.49 -1.16 -8.67 16 10 C -0.13 -4.81 6.16 71.23 0.44 -4.37 16 11 C 0.54 17.70 6.00 87.66 0.53 18.23 16 12 O -0.55 -22.90 13.71 -3.02 -0.04 -22.94 16 13 N -0.71 -15.59 4.71 -448.88 -2.12 -17.70 16 14 C 0.19 3.87 2.36 43.67 0.10 3.98 16 15 H 0.09 2.20 7.52 -2.39 -0.02 2.18 16 16 C -0.12 -1.46 5.24 30.40 0.16 -1.30 16 17 C -0.10 -1.11 6.53 72.16 0.47 -0.64 16 18 S -0.12 -2.29 21.47 -56.49 -1.21 -3.51 16 19 C -0.12 -2.78 6.05 22.58 0.14 -2.64 16 20 C 0.09 2.21 7.24 22.57 0.16 2.38 16 21 F -0.14 -3.40 16.57 44.97 0.75 -2.66 16 22 C -0.13 -2.90 10.03 22.22 0.22 -2.68 16 23 C -0.10 -2.47 10.03 22.18 0.22 -2.25 16 24 C -0.12 -3.53 8.77 22.47 0.20 -3.33 16 25 C -0.08 -1.96 5.63 -19.82 -0.11 -2.08 16 26 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 27 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 28 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 29 H 0.42 6.41 8.59 -92.71 -0.80 5.61 16 30 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.05 8.03 -2.39 -0.02 1.03 16 32 H 0.10 1.20 8.08 -2.38 -0.02 1.18 16 33 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 36 H 0.12 4.19 4.01 -2.91 -0.01 4.18 16 Total: -1.00 -74.12 331.21 2.51 -71.61 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.34 Total: 16.76 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 3.64 Total: -23.00 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.83 Total: -72.15 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.04 Total: -22.94 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.75 Total: -2.66 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -9.80 SS G_CDS: -2.38 Total: -12.18 kcal Total: -74.12 2.51 -71.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028045671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.950 kcal (2) G-P(sol) polarization free energy of solvation -74.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds