Wall clock time and date at job start Tue Mar 31 2020 15:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48505 * 109.46897 * 240.00012 * 3 2 1 5 5 H 1.48499 * 109.46924 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47262 * 120.00139 * 3 2 1 7 7 C 1.38804 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99526 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99667 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99623 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00221 * 180.02562 * 11 10 9 14 14 C 1.46508 * 120.00273 * 179.97438 * 13 11 10 15 15 H 1.09003 * 108.50559 * 327.00835 * 14 13 11 16 16 C 1.51869 * 108.67000 * 209.01526 * 14 13 11 17 17 C 1.53529 * 108.97220 * 178.38354 * 16 14 13 18 18 S 1.81610 * 107.31491 * 72.54249 * 17 16 14 19 19 C 1.76456 * 102.63436 * 313.61090 * 18 17 16 20 20 C 1.39814 * 117.71274 * 193.33937 * 19 18 17 21 21 F 1.35097 * 119.71000 * 0.50115 * 20 19 18 22 22 C 1.37897 * 120.58512 * 180.47652 * 20 19 18 23 23 C 1.38368 * 119.48927 * 0.17031 * 22 20 19 24 24 C 1.37723 * 120.01940 * 359.68694 * 23 22 20 25 25 C 1.38075 * 122.31824 * 13.40228 * 19 18 17 26 26 H 0.96996 * 120.00288 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47365 * 60.00661 * 10 9 7 28 28 H 1.08998 * 109.47424 * 299.99986 * 10 9 7 29 29 H 0.97003 * 120.00540 * 359.97438 * 13 11 10 30 30 H 1.09002 * 109.55815 * 58.52846 * 16 14 13 31 31 H 1.09005 * 109.55030 * 298.22515 * 16 14 13 32 32 H 1.09000 * 109.88165 * 313.09178 * 17 16 14 33 33 H 1.09000 * 109.88610 * 191.99575 * 17 16 14 34 34 H 1.07998 * 120.25611 * 180.18052 * 22 20 19 35 35 H 1.07993 * 119.99065 * 179.66912 * 23 22 20 36 36 H 1.07995 * 119.45577 * 179.91018 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8913 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7911 -5.5023 0.0028 13 7 2.8441 -6.3431 0.0020 14 6 2.3304 -7.7151 0.0029 15 1 1.3974 -7.7348 0.5662 16 6 3.3386 -8.6112 0.7009 17 6 2.7887 -10.0440 0.7417 18 16 2.8886 -10.7096 -0.9451 19 6 2.2311 -9.3932 -1.9190 20 6 1.8954 -9.6721 -3.2473 21 9 2.0709 -10.9199 -3.7344 22 6 1.3861 -8.6849 -4.0643 23 6 1.2110 -7.4077 -3.5616 24 6 1.5383 -7.1316 -2.2527 25 6 2.0454 -8.1221 -1.4129 26 1 -0.4850 0.8400 -0.0004 27 1 3.1251 -3.7310 0.8908 28 1 3.1238 -3.7317 -0.8891 29 1 3.8010 -6.1835 0.0015 30 1 3.5019 -8.2539 1.7176 31 1 4.2803 -8.5974 0.1520 32 1 1.7510 -10.0335 1.0753 33 1 3.3901 -10.6529 1.4168 34 1 1.1258 -8.9069 -5.0887 35 1 0.8178 -6.6271 -4.1959 36 1 1.3993 -6.1312 -1.8701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028045673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:41 Heat of formation + Delta-G solvation = -51.064660 kcal Electronic energy + Delta-G solvation = -22478.226822 eV Core-core repulsion = 18901.248439 eV Total energy + Delta-G solvation = -3576.978384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.03935 -40.50767 -38.55191 -36.29845 -33.12143 -32.48748 -31.15363 -30.61701 -29.32104 -26.25126 -25.47547 -23.74159 -22.85357 -21.14185 -20.57493 -18.34414 -17.91139 -17.10286 -16.81813 -16.61390 -16.11323 -15.76947 -15.55058 -15.46091 -14.85634 -14.37598 -14.20770 -13.95614 -13.72666 -13.42480 -13.27383 -13.12865 -12.82153 -12.61588 -12.46632 -12.30084 -11.75386 -11.59943 -11.11005 -11.09445 -11.06975 -10.82550 -10.39732 -9.98594 -9.89299 -9.60562 -9.26331 -9.10985 -8.80327 -8.33375 -7.67681 -6.58081 -6.27613 -3.99239 0.82971 0.97752 1.21708 2.01196 2.82857 2.84701 3.19589 3.21462 3.25238 3.36457 3.57003 3.93445 4.14189 4.16146 4.39152 4.46665 4.70919 4.77346 4.85727 5.01008 5.07846 5.13312 5.18662 5.20068 5.39124 5.45842 5.52760 5.67850 5.69475 5.76815 5.90980 6.03272 6.10484 6.25926 6.43618 6.66471 7.47529 7.53781 8.28931 8.37347 9.17861 10.79685 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.002864 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.417527 B = 9774.787817 C =10521.609720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.156 4.156 11 C 0.532 3.468 12 O -0.510 6.510 13 N -0.731 5.731 14 C 0.183 3.817 15 H 0.106 0.894 16 C -0.130 4.130 17 C -0.104 4.104 18 S -0.105 6.105 19 C -0.111 4.111 20 C 0.106 3.894 21 F -0.132 7.132 22 C -0.137 4.137 23 C -0.092 4.092 24 C -0.098 4.098 25 C -0.072 4.072 26 H 0.270 0.730 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.403 0.597 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 -19.957 -2.047 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.170 5.830 10 C -0.306 4.306 11 C 0.320 3.680 12 O -0.384 6.384 13 N -0.385 5.385 14 C 0.078 3.922 15 H 0.124 0.876 16 C -0.169 4.169 17 C -0.253 4.253 18 S 0.136 5.864 19 C -0.225 4.225 20 C 0.081 3.919 21 F -0.111 7.111 22 C -0.157 4.157 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.079 4.079 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.237 0.763 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.328 -21.351 -2.274 22.384 hybrid contribution 1.914 2.381 0.165 3.059 sum 8.242 -18.970 -2.109 20.790 Atomic orbital electron populations 1.69996 1.05957 1.27675 1.46599 1.24987 0.95026 0.99040 0.94418 0.86225 0.79257 0.81200 0.78844 1.19899 1.20781 1.19909 1.22820 0.94885 0.91596 1.59330 0.90925 1.85394 1.04529 0.96329 1.96762 1.23568 1.06886 0.94954 1.05224 1.20414 0.86636 0.86418 0.74580 1.90743 1.15176 1.85422 1.47051 1.46125 1.10318 1.04340 1.77750 1.19396 0.99172 0.82263 0.91404 0.87591 1.21874 0.99122 0.93080 1.02819 1.23776 1.06186 0.99092 0.96260 1.85673 1.78546 1.20868 1.01272 1.21338 1.07598 0.97393 0.96122 1.17202 1.02887 0.80448 0.91345 1.91500 1.93246 1.38625 1.87707 1.21075 1.01539 0.92842 1.00286 1.21050 0.98459 0.96000 0.95730 1.21782 0.96015 1.00677 0.93353 1.19845 1.00100 0.91354 0.96638 0.92056 0.88962 0.89006 0.76278 0.88582 0.89490 0.88407 0.86221 0.84196 0.84391 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.49 13.22 55.49 0.73 -24.76 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 10 C -0.16 -2.88 6.16 36.01 0.22 -2.66 16 11 C 0.53 8.83 5.98 -10.99 -0.07 8.76 16 12 O -0.51 -10.33 13.93 5.56 0.08 -10.25 16 13 N -0.73 -8.66 4.65 -55.80 -0.26 -8.92 16 14 C 0.18 2.04 2.36 -69.97 -0.17 1.88 16 15 H 0.11 1.36 7.45 -51.93 -0.39 0.98 16 16 C -0.13 -1.00 5.26 -27.03 -0.14 -1.14 16 17 C -0.10 -0.77 6.53 37.43 0.24 -0.53 16 18 S -0.11 -1.10 21.48 -107.50 -2.31 -3.41 16 19 C -0.11 -1.38 6.05 -39.05 -0.24 -1.61 16 20 C 0.11 1.34 7.24 -39.12 -0.28 1.05 16 21 F -0.13 -1.71 16.57 2.25 0.04 -1.67 16 22 C -0.14 -1.56 10.03 -39.66 -0.40 -1.96 16 23 C -0.09 -1.12 10.03 -39.72 -0.40 -1.52 16 24 C -0.10 -1.37 8.82 -39.34 -0.35 -1.72 16 25 C -0.07 -0.91 5.63 -104.56 -0.59 -1.50 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 28 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 29 H 0.40 3.64 8.61 -40.82 -0.35 3.29 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.14 2.31 4.26 -52.49 -0.22 2.08 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -32.86 331.61 -9.80 -42.66 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -3.88 Total: 2.66 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.96 Total: -13.47 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.47 Total: -33.68 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -4.52 Total: -7.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.86 -9.80 -42.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028045673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.403 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds