Wall clock time and date at job start Tue Mar 31 2020 15:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48505 * 109.46897 * 240.00012 * 3 2 1 5 5 H 1.48499 * 109.46924 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47262 * 120.00139 * 3 2 1 7 7 C 1.38804 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99526 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99667 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99623 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00221 * 180.02562 * 11 10 9 14 14 C 1.46508 * 120.00273 * 179.97438 * 13 11 10 15 15 H 1.09003 * 108.50559 * 327.00835 * 14 13 11 16 16 C 1.51869 * 108.67000 * 209.01526 * 14 13 11 17 17 C 1.53529 * 108.97220 * 178.38354 * 16 14 13 18 18 S 1.81610 * 107.31491 * 72.54249 * 17 16 14 19 19 C 1.76456 * 102.63436 * 313.61090 * 18 17 16 20 20 C 1.39814 * 117.71274 * 193.33937 * 19 18 17 21 21 F 1.35097 * 119.71000 * 0.50115 * 20 19 18 22 22 C 1.37897 * 120.58512 * 180.47652 * 20 19 18 23 23 C 1.38368 * 119.48927 * 0.17031 * 22 20 19 24 24 C 1.37723 * 120.01940 * 359.68694 * 23 22 20 25 25 C 1.38075 * 122.31824 * 13.40228 * 19 18 17 26 26 H 0.96996 * 120.00288 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47365 * 60.00661 * 10 9 7 28 28 H 1.08998 * 109.47424 * 299.99986 * 10 9 7 29 29 H 0.97003 * 120.00540 * 359.97438 * 13 11 10 30 30 H 1.09002 * 109.55815 * 58.52846 * 16 14 13 31 31 H 1.09005 * 109.55030 * 298.22515 * 16 14 13 32 32 H 1.09000 * 109.88165 * 313.09178 * 17 16 14 33 33 H 1.09000 * 109.88610 * 191.99575 * 17 16 14 34 34 H 1.07998 * 120.25611 * 180.18052 * 22 20 19 35 35 H 1.07993 * 119.99065 * 179.66912 * 23 22 20 36 36 H 1.07995 * 119.45577 * 179.91018 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8913 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7911 -5.5023 0.0028 13 7 2.8441 -6.3431 0.0020 14 6 2.3304 -7.7151 0.0029 15 1 1.3974 -7.7348 0.5662 16 6 3.3386 -8.6112 0.7009 17 6 2.7887 -10.0440 0.7417 18 16 2.8886 -10.7096 -0.9451 19 6 2.2311 -9.3932 -1.9190 20 6 1.8954 -9.6721 -3.2473 21 9 2.0709 -10.9199 -3.7344 22 6 1.3861 -8.6849 -4.0643 23 6 1.2110 -7.4077 -3.5616 24 6 1.5383 -7.1316 -2.2527 25 6 2.0454 -8.1221 -1.4129 26 1 -0.4850 0.8400 -0.0004 27 1 3.1251 -3.7310 0.8908 28 1 3.1238 -3.7317 -0.8891 29 1 3.8010 -6.1835 0.0015 30 1 3.5019 -8.2539 1.7176 31 1 4.2803 -8.5974 0.1520 32 1 1.7510 -10.0335 1.0753 33 1 3.3901 -10.6529 1.4168 34 1 1.1258 -8.9069 -5.0887 35 1 0.8178 -6.6271 -4.1959 36 1 1.3993 -6.1312 -1.8701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028045673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:40 Heat of formation + Delta-G solvation = -71.291964 kcal Electronic energy + Delta-G solvation = -22479.103944 eV Core-core repulsion = 18901.248439 eV Total energy + Delta-G solvation = -3577.855505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.01695 -41.60771 -39.68713 -37.26438 -34.58098 -34.16766 -32.02037 -31.66390 -30.63643 -27.74150 -27.03523 -24.56634 -23.80391 -22.05683 -21.81956 -19.85282 -19.20088 -18.12696 -17.93226 -17.75474 -17.19784 -16.86944 -16.77523 -16.64419 -16.38916 -15.85805 -15.45466 -15.00786 -14.64935 -14.58533 -14.50424 -14.20512 -13.87155 -13.66475 -13.58251 -13.33304 -13.16516 -12.88902 -12.79731 -12.61747 -12.41330 -11.94545 -11.74494 -11.18924 -11.12384 -11.06306 -10.78913 -10.38252 -10.27263 -9.79174 -8.65160 -8.51754 -8.34266 -6.11597 -0.10710 -0.01214 0.41789 1.25801 1.27050 1.43984 1.46463 1.52243 1.55782 2.11470 2.27846 2.43883 2.99401 3.00319 3.29562 3.37759 3.58971 3.74038 3.83955 3.90933 3.98314 4.17474 4.23601 4.30039 4.39825 4.51727 4.52059 4.59877 4.71428 4.80725 4.91522 4.96194 5.12761 5.25257 5.41795 5.42649 5.70299 6.20028 6.40686 7.07586 7.15069 8.74377 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.002864 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.417527 B = 9774.787817 C =10521.609720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.143 6.143 10 C -0.132 4.132 11 C 0.539 3.461 12 O -0.552 6.552 13 N -0.706 5.706 14 C 0.185 3.815 15 H 0.088 0.912 16 C -0.121 4.121 17 C -0.095 4.095 18 S -0.119 6.119 19 C -0.116 4.116 20 C 0.090 3.910 21 F -0.135 7.135 22 C -0.130 4.130 23 C -0.098 4.098 24 C -0.120 4.120 25 C -0.078 4.078 26 H 0.271 0.729 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.420 0.580 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.558 -20.779 -1.578 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.084 5.916 10 C -0.283 4.283 11 C 0.326 3.674 12 O -0.430 6.430 13 N -0.360 5.360 14 C 0.080 3.920 15 H 0.106 0.894 16 C -0.160 4.160 17 C -0.244 4.244 18 S 0.123 5.877 19 C -0.230 4.230 20 C 0.066 3.934 21 F -0.114 7.114 22 C -0.150 4.150 23 C -0.118 4.118 24 C -0.140 4.140 25 C -0.085 4.085 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.258 0.742 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.168 0.832 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.889 -22.211 -1.804 23.991 hybrid contribution 1.160 2.476 0.010 2.734 sum 10.049 -19.735 -1.793 22.219 Atomic orbital electron populations 1.70162 1.07915 1.28651 1.47974 1.26078 0.95908 1.03200 0.93770 0.85053 0.77851 0.75927 0.79492 1.18719 1.20548 1.18662 1.23187 0.95381 0.92155 1.58893 0.89921 1.85543 1.10048 0.98927 1.97053 1.23396 1.03821 0.94148 1.06982 1.20030 0.86324 0.86557 0.74486 1.90735 1.17048 1.85818 1.49350 1.45811 1.10630 1.03836 1.75707 1.19529 0.99710 0.81958 0.90840 0.89381 1.21875 0.98144 0.92307 1.03686 1.23928 1.07049 0.99075 0.94331 1.85719 1.77952 1.20630 1.03425 1.21495 1.07150 0.97785 0.96527 1.17455 1.03478 0.80604 0.91894 1.91489 1.93327 1.38807 1.87749 1.21308 1.00378 0.92026 1.01301 1.21214 0.98387 0.96836 0.95395 1.21742 0.97619 1.00106 0.94533 1.19914 1.00219 0.91310 0.97098 0.92018 0.86938 0.87267 0.74228 0.86212 0.88441 0.88282 0.83037 0.81719 0.83247 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.78 13.22 21.65 0.29 -54.49 16 2 C 0.02 0.86 5.49 84.86 0.47 1.32 16 3 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.55 -30.30 9.50 67.96 0.65 -29.65 16 8 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 9 S -0.14 -7.55 20.57 -56.49 -1.16 -8.71 16 10 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 11 C 0.54 17.76 5.98 87.66 0.52 18.28 16 12 O -0.55 -23.05 13.93 -3.03 -0.04 -23.09 16 13 N -0.71 -15.64 4.65 -448.85 -2.09 -17.73 16 14 C 0.18 3.87 2.36 43.67 0.10 3.97 16 15 H 0.09 2.23 7.45 -2.39 -0.02 2.21 16 16 C -0.12 -1.48 5.26 30.40 0.16 -1.32 16 17 C -0.10 -1.12 6.53 72.16 0.47 -0.65 16 18 S -0.12 -2.27 21.48 -56.49 -1.21 -3.49 16 19 C -0.12 -2.77 6.05 22.61 0.14 -2.63 16 20 C 0.09 2.21 7.24 22.57 0.16 2.37 16 21 F -0.14 -3.37 16.57 44.97 0.75 -2.62 16 22 C -0.13 -2.85 10.03 22.22 0.22 -2.63 16 23 C -0.10 -2.38 10.03 22.18 0.22 -2.16 16 24 C -0.12 -3.39 8.82 22.43 0.20 -3.19 16 25 C -0.08 -1.93 5.63 -19.83 -0.11 -2.04 16 26 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 27 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 28 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 29 H 0.42 6.46 8.61 -92.71 -0.80 5.66 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.06 8.03 -2.38 -0.02 1.04 16 32 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 35 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.12 3.99 4.26 -2.91 -0.01 3.98 16 Total: -1.00 -74.19 331.61 2.53 -71.67 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.34 Total: 16.60 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 3.64 Total: -22.69 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.80 Total: -72.22 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.75 Total: -2.62 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -9.82 SS G_CDS: -2.38 Total: -12.19 kcal Total: -74.19 2.53 -71.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028045673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.374 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds