Wall clock time and date at job start Tue Mar 31 2020 14:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46975 * 2 1 4 4 C 1.46504 * 119.99800 * 274.99686 * 3 2 1 5 5 C 1.50707 * 109.46907 * 275.00244 * 4 3 2 6 6 H 1.07998 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99654 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99708 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99934 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47039 * 89.99740 * 9 7 5 11 11 H 1.48499 * 109.46910 * 209.99882 * 9 7 5 12 12 H 1.48505 * 109.46756 * 329.99569 * 9 7 5 13 13 S 1.65597 * 120.00109 * 95.00188 * 3 2 1 14 14 O 1.42102 * 106.40137 * 156.46017 * 13 3 2 15 15 O 1.42095 * 106.40348 * 23.53694 * 13 3 2 16 16 C 1.76199 * 107.21739 * 269.99452 * 13 3 2 17 17 C 1.35510 * 120.04919 * 115.02173 * 16 13 3 18 18 C 1.39490 * 121.58073 * 179.70857 * 17 16 13 19 19 C 1.35508 * 121.58505 * 0.56786 * 18 17 16 20 20 C 1.41763 * 119.89801 * 359.43859 * 19 18 17 21 21 N 1.32331 * 131.00774 * 180.27318 * 20 19 18 22 22 S 1.55542 * 109.42052 * 180.02562 * 21 20 19 23 23 N 1.55537 * 100.20494 * 0.02562 * 22 21 20 24 24 C 1.32334 * 109.42132 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47079 * 300.00267 * 1 2 3 26 26 H 1.09000 * 109.47059 * 60.00368 * 1 2 3 27 27 H 1.09003 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47079 * 239.99733 * 2 1 3 29 29 H 1.09000 * 109.47059 * 119.99632 * 2 1 3 30 30 H 1.09003 * 109.47114 * 34.99853 * 4 3 2 31 31 H 1.08995 * 109.46832 * 155.00228 * 4 3 2 32 32 H 0.97004 * 119.99173 * 180.02562 * 8 7 5 33 33 H 1.08001 * 119.20635 * 359.97438 * 17 16 13 34 34 H 1.08000 * 119.21394 * 180.31519 * 18 17 16 35 35 H 1.08002 * 120.05502 * 179.72124 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4948 1.7887 -1.8823 6 1 4.1721 1.1110 -1.3839 7 6 3.8526 2.3604 -3.0850 8 7 3.0272 3.1845 -3.6926 9 14 5.5090 1.9633 -3.8518 10 1 5.3729 0.7800 -4.7385 11 1 5.9778 3.1265 -4.6470 12 1 6.4928 1.6679 -2.7794 13 16 2.4122 2.1202 1.4286 14 8 3.3283 3.1571 1.1048 15 8 2.7095 1.0800 2.3499 16 6 0.9555 2.9119 2.0252 17 6 0.3820 2.4963 3.1805 18 6 -0.7678 3.1038 3.6851 19 6 -1.3707 4.1302 3.0377 20 6 -0.8254 4.6173 1.8231 21 7 -1.2220 5.5940 1.0232 22 16 -0.2473 5.7018 -0.1841 23 7 0.7498 4.5599 0.1639 24 6 0.3809 3.9837 1.2967 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3618 1.8096 -1.9454 31 1 2.0922 3.1802 -1.0757 32 1 3.2788 3.5864 -4.5388 33 1 0.8282 1.6777 3.7257 34 1 -1.1900 2.7450 4.6121 35 1 -2.2627 4.5796 3.4485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:49 Heat of formation + Delta-G solvation = 13.933429 kcal Electronic energy + Delta-G solvation = -24225.464470 eV Core-core repulsion = 20671.224576 eV Total energy + Delta-G solvation = -3554.239893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85847 -36.86564 -36.29842 -35.98562 -35.12735 -33.88186 -32.59593 -30.51995 -29.91440 -27.60769 -26.53286 -23.11787 -22.66231 -22.58985 -21.56580 -19.62759 -18.23674 -17.56175 -17.18327 -16.42051 -16.31278 -15.78752 -15.65727 -15.39686 -14.98452 -14.36080 -13.80590 -13.34489 -12.94506 -12.85406 -12.48922 -12.30198 -12.06559 -11.94740 -11.86551 -11.67115 -11.57807 -11.44244 -11.27337 -11.21291 -10.97472 -10.85360 -10.78250 -10.38797 -10.25578 -10.21911 -9.92075 -9.62552 -8.81688 -8.75346 -8.34577 -7.99362 -5.98643 -4.00765 -0.31203 1.02452 1.30723 1.51572 1.55402 1.82350 3.20012 3.35316 3.41508 3.47755 3.69587 4.18863 4.29313 4.50117 4.63593 4.75055 4.90868 5.04455 5.24278 5.36918 5.43937 5.46435 5.67187 5.73494 5.80313 5.96978 6.01871 6.04006 6.11397 6.30006 6.59469 6.69928 6.76035 7.37890 7.57143 7.76550 7.99092 8.30833 9.00720 9.62458 11.10041 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.005869 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.937737 B = 4769.921493 C = 5836.577955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.115 3.885 3 N -0.974 5.974 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.685 3.315 14 O -0.928 6.928 15 O -0.977 6.977 16 C -0.621 4.621 17 C 0.017 3.983 18 C -0.126 4.126 19 C -0.015 4.015 20 C 0.058 3.942 21 N -0.602 5.602 22 S 0.829 5.171 23 N -0.564 5.564 24 C 0.138 3.862 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.261 0.739 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 0.743 11.803 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.814 5.814 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 S 2.771 3.229 14 O -0.918 6.918 15 O -0.968 6.968 16 C -0.710 4.710 17 C -0.009 4.009 18 C -0.151 4.151 19 C -0.040 4.040 20 C -0.101 4.101 21 N -0.453 5.453 22 S 0.876 5.124 23 N -0.414 5.414 24 C -0.022 4.022 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.997 2.367 10.203 15.187 hybrid contribution 0.046 -1.011 0.781 1.278 sum -10.951 1.357 10.983 15.569 Atomic orbital electron populations 1.22249 0.97469 1.01452 1.01890 1.21208 0.92962 0.83155 1.03790 1.57401 1.80877 1.20848 1.22314 1.19323 0.96774 0.93026 0.78183 1.21519 1.02136 1.27323 1.05392 0.92273 1.24890 0.97195 0.94943 0.96915 1.69931 1.36033 1.30493 1.17054 0.86555 0.84297 0.77741 0.79196 1.20750 1.21156 1.19736 1.02380 0.74018 0.73651 0.72883 1.93623 1.57806 1.57472 1.82852 1.93486 1.83034 1.56508 1.63748 1.30811 1.25684 1.09001 1.05547 1.20815 0.92463 0.95834 0.91754 1.20882 0.96347 0.96842 1.01052 1.20491 0.98658 0.94799 0.90030 1.21287 0.95993 0.94392 0.98475 1.72167 1.35160 1.24782 1.13239 1.78777 0.97093 1.19443 1.17111 1.72469 1.32947 1.16816 1.19171 1.20255 0.94220 0.97363 0.90329 0.93548 0.92171 0.92032 0.89380 0.90306 0.95332 0.91497 0.92909 0.82729 0.83729 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 10.24 37.16 0.38 -2.13 16 2 C 0.12 2.02 6.40 -4.04 -0.03 2.00 16 3 N -0.97 -20.89 2.77 -115.66 -0.32 -21.21 16 4 C 0.25 6.36 5.10 -5.19 -0.03 6.33 16 5 C -0.52 -14.88 9.38 -34.43 -0.32 -15.20 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 13 S 2.69 55.89 5.56 -107.50 -0.60 55.29 16 14 O -0.93 -23.21 16.92 -57.17 -0.97 -24.18 16 15 O -0.98 -19.65 15.46 -57.17 -0.88 -20.53 16 16 C -0.62 -10.66 5.93 -39.21 -0.23 -10.89 16 17 C 0.02 0.22 9.43 -40.09 -0.38 -0.16 16 18 C -0.13 -1.25 9.89 -40.09 -0.40 -1.64 16 19 C -0.01 -0.16 10.09 -39.21 -0.40 -0.56 16 20 C 0.06 0.87 7.16 -83.17 -0.60 0.28 16 21 N -0.60 -8.89 11.44 25.63 0.29 -8.59 16 22 S 0.83 12.14 23.60 -107.50 -2.54 9.60 16 23 N -0.56 -10.92 9.49 25.63 0.24 -10.68 16 24 C 0.14 2.47 6.86 -83.17 -0.57 1.90 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 29 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 30 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 31 H 0.07 1.81 5.61 -51.93 -0.29 1.52 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.16 1.68 7.22 -52.49 -0.38 1.30 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -35.52 327.95 -10.30 -45.83 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -3.53 Total: -3.68 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.66 Total: -18.40 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: 0.95 Total: -65.88 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.85 Total: -44.72 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 68.03 SS G_CDS: -3.13 Total: 64.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.52 -10.30 -45.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.762 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds