Wall clock time and date at job start Tue Mar 31 2020 14:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46975 * 2 1 4 4 C 1.46504 * 119.99800 * 274.99686 * 3 2 1 5 5 C 1.50707 * 109.46907 * 275.00244 * 4 3 2 6 6 H 1.07998 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99654 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99708 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99934 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47039 * 89.99740 * 9 7 5 11 11 H 1.48499 * 109.46910 * 209.99882 * 9 7 5 12 12 H 1.48505 * 109.46756 * 329.99569 * 9 7 5 13 13 S 1.65597 * 120.00109 * 95.00188 * 3 2 1 14 14 O 1.42102 * 106.40137 * 156.46017 * 13 3 2 15 15 O 1.42095 * 106.40348 * 23.53694 * 13 3 2 16 16 C 1.76199 * 107.21739 * 269.99452 * 13 3 2 17 17 C 1.35510 * 120.04919 * 115.02173 * 16 13 3 18 18 C 1.39490 * 121.58073 * 179.70857 * 17 16 13 19 19 C 1.35508 * 121.58505 * 0.56786 * 18 17 16 20 20 C 1.41763 * 119.89801 * 359.43859 * 19 18 17 21 21 N 1.32331 * 131.00774 * 180.27318 * 20 19 18 22 22 S 1.55542 * 109.42052 * 180.02562 * 21 20 19 23 23 N 1.55537 * 100.20494 * 0.02562 * 22 21 20 24 24 C 1.32334 * 109.42132 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47079 * 300.00267 * 1 2 3 26 26 H 1.09000 * 109.47059 * 60.00368 * 1 2 3 27 27 H 1.09003 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47079 * 239.99733 * 2 1 3 29 29 H 1.09000 * 109.47059 * 119.99632 * 2 1 3 30 30 H 1.09003 * 109.47114 * 34.99853 * 4 3 2 31 31 H 1.08995 * 109.46832 * 155.00228 * 4 3 2 32 32 H 0.97004 * 119.99173 * 180.02562 * 8 7 5 33 33 H 1.08001 * 119.20635 * 359.97438 * 17 16 13 34 34 H 1.08000 * 119.21394 * 180.31519 * 18 17 16 35 35 H 1.08002 * 120.05502 * 179.72124 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4948 1.7887 -1.8823 6 1 4.1721 1.1110 -1.3839 7 6 3.8526 2.3604 -3.0850 8 7 3.0272 3.1845 -3.6926 9 14 5.5090 1.9633 -3.8518 10 1 5.3729 0.7800 -4.7385 11 1 5.9778 3.1265 -4.6470 12 1 6.4928 1.6679 -2.7794 13 16 2.4122 2.1202 1.4286 14 8 3.3283 3.1571 1.1048 15 8 2.7095 1.0800 2.3499 16 6 0.9555 2.9119 2.0252 17 6 0.3820 2.4963 3.1805 18 6 -0.7678 3.1038 3.6851 19 6 -1.3707 4.1302 3.0377 20 6 -0.8254 4.6173 1.8231 21 7 -1.2220 5.5940 1.0232 22 16 -0.2473 5.7018 -0.1841 23 7 0.7498 4.5599 0.1639 24 6 0.3809 3.9837 1.2967 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3618 1.8096 -1.9454 31 1 2.0922 3.1802 -1.0757 32 1 3.2788 3.5864 -4.5388 33 1 0.8282 1.6777 3.7257 34 1 -1.1900 2.7450 4.6121 35 1 -2.2627 4.5796 3.4485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:49 Heat of formation + Delta-G solvation = -12.907933 kcal Electronic energy + Delta-G solvation = -24226.628399 eV Core-core repulsion = 20671.224576 eV Total energy + Delta-G solvation = -3555.403822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98294 -38.35533 -37.67959 -37.46111 -36.81717 -35.04898 -34.68152 -31.65963 -31.43070 -28.71057 -28.45078 -24.91413 -23.88973 -23.73453 -23.07001 -20.79292 -19.72235 -18.89751 -18.58772 -18.32689 -17.87747 -17.20465 -16.89663 -16.83460 -16.31592 -15.94298 -15.40219 -14.78827 -14.64283 -13.91652 -13.84569 -13.65285 -13.50051 -13.31619 -13.25084 -13.07616 -13.05038 -12.97321 -12.77785 -12.72996 -12.69342 -12.53183 -12.23752 -12.16931 -11.89173 -11.68816 -11.65108 -11.34877 -10.53265 -9.94348 -9.84417 -9.70625 -8.15946 -6.26409 -1.38892 -0.50805 0.25813 0.38388 0.39510 0.68304 1.37374 1.40151 1.50686 2.00907 2.32979 2.42572 2.79579 3.03458 3.14723 3.45425 3.79575 3.86428 3.97184 4.02610 4.13213 4.41997 4.46843 4.49887 4.69015 4.71474 5.01121 5.02557 5.10187 5.16906 5.19916 5.28670 5.41242 5.55846 5.72475 5.82229 6.00247 6.17675 6.81275 7.40147 8.91718 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.005869 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.937737 B = 4769.921493 C = 5836.577955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 N -0.986 5.986 4 C 0.268 3.732 5 C -0.547 4.547 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.955 3.045 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.275 1.275 13 S 2.690 3.310 14 O -0.986 6.986 15 O -0.980 6.980 16 C -0.657 4.657 17 C 0.047 3.953 18 C -0.112 4.112 19 C -0.001 4.001 20 C 0.046 3.954 21 N -0.595 5.595 22 S 0.851 5.149 23 N -0.632 5.632 24 C 0.120 3.880 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.011 0.989 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.179 0.821 34 H 0.204 0.796 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.871 -0.106 14.408 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.020 4.020 3 N -0.825 5.825 4 C 0.144 3.856 5 C -0.586 4.586 6 H 0.068 0.932 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.200 1.200 13 S 2.783 3.217 14 O -0.977 6.977 15 O -0.970 6.970 16 C -0.752 4.752 17 C 0.020 3.980 18 C -0.137 4.137 19 C -0.026 4.026 20 C -0.113 4.113 21 N -0.447 5.447 22 S 0.899 5.101 23 N -0.482 5.482 24 C -0.039 4.039 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.196 0.804 34 H 0.221 0.779 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.090 1.468 12.776 18.351 hybrid contribution 0.567 -0.739 0.151 0.944 sum -12.523 0.729 12.928 18.013 Atomic orbital electron populations 1.22169 0.94935 1.03460 1.01531 1.21462 0.95166 0.81348 1.03975 1.57273 1.81696 1.22291 1.21238 1.18778 0.94775 0.92504 0.79493 1.21866 1.03348 1.27409 1.06016 0.93233 1.25712 1.00763 0.94818 0.97432 1.70031 1.37644 1.31105 1.17442 0.85609 0.79830 0.78219 0.78355 1.19040 1.20376 1.20035 1.01619 0.74645 0.72957 0.72504 1.93545 1.61407 1.59022 1.83709 1.93462 1.83937 1.56485 1.63163 1.30065 1.25726 1.11026 1.08391 1.21385 0.92287 0.95000 0.89292 1.21450 0.94381 0.95431 1.02393 1.21144 0.99334 0.94279 0.87836 1.21763 0.95388 0.94359 0.99834 1.72207 1.34726 1.24599 1.13163 1.78458 0.96347 1.18337 1.16929 1.72301 1.35675 1.19169 1.21062 1.20599 0.95346 0.97764 0.90214 0.92294 0.94127 0.88698 0.90604 0.88675 0.97105 0.93267 0.92578 0.80419 0.77862 0.79883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 10.24 71.98 0.74 -3.86 16 2 C 0.11 3.75 6.40 86.38 0.55 4.30 16 3 N -0.99 -43.97 2.77 -519.83 -1.44 -45.40 16 4 C 0.27 14.52 5.10 85.63 0.44 14.96 16 5 C -0.55 -32.54 9.38 25.60 0.24 -32.30 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.70 5.46 84.66 0.46 1.16 16 8 N -0.92 -55.75 13.29 21.45 0.28 -55.47 16 9 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 S 2.69 115.00 5.56 -56.49 -0.31 114.69 16 14 O -0.99 -52.39 16.92 -128.00 -2.17 -54.55 16 15 O -0.98 -39.16 15.46 -128.00 -1.98 -41.14 16 16 C -0.66 -22.02 5.93 22.51 0.13 -21.89 16 17 C 0.05 1.02 9.43 21.94 0.21 1.23 16 18 C -0.11 -1.53 9.89 21.94 0.22 -1.32 16 19 C 0.00 -0.02 10.09 22.51 0.23 0.21 16 20 C 0.05 1.30 7.16 41.97 0.30 1.60 16 21 N -0.59 -16.89 11.44 -72.83 -0.83 -17.72 16 22 S 0.85 25.78 23.60 -56.49 -1.33 24.45 16 23 N -0.63 -25.66 9.49 -72.84 -0.69 -26.35 16 24 C 0.12 4.31 6.86 41.97 0.29 4.60 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 29 H 0.10 3.01 6.91 -2.39 -0.02 2.99 16 30 H 0.01 0.61 8.11 -2.39 -0.02 0.59 16 31 H 0.05 2.86 5.61 -2.39 -0.01 2.85 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 33 H 0.18 3.05 7.22 -2.91 -0.02 3.03 16 34 H 0.20 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -82.95 327.95 -1.51 -84.46 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 1.13 Total: 0.06 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.80 Total: -31.29 kcal Atomic # 7 Polarization: -142.26 SS G_CDS: -2.68 Total: -144.94 kcal Atomic # 8 Polarization: -91.54 SS G_CDS: -4.14 Total: -95.69 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 140.78 SS G_CDS: -1.65 Total: 139.14 kcal Total: -82.95 -1.51 -84.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.554 kcal (2) G-P(sol) polarization free energy of solvation -82.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds