Wall clock time and date at job start Tue Mar 31 2020 15:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86801 * 119.99502 * 2 1 4 4 H 1.48496 * 109.47374 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47196 * 30.00662 * 3 2 1 6 6 H 1.48498 * 109.46792 * 150.00351 * 3 2 1 7 7 C 1.38794 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99619 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00138 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99937 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46769 * 180.02562 * 10 9 7 12 12 O 1.20821 * 120.00140 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99644 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00087 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47550 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.46726 * 64.99819 * 15 14 13 17 17 C 1.35904 * 116.99628 * 180.02562 * 16 15 14 18 18 C 1.38750 * 120.05931 * 359.72554 * 17 16 15 19 19 C 1.38118 * 119.95074 * 179.78891 * 18 17 16 20 20 C 1.38299 * 120.04796 * 0.48601 * 19 18 17 21 21 C 1.38235 * 120.11352 * 359.74707 * 20 19 18 22 22 N 1.48005 * 119.97171 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99801 * 180.02562 * 22 21 20 24 24 O 1.21803 * 120.00183 * 0.02562 * 22 21 20 25 25 C 1.38175 * 120.05747 * 0.02562 * 21 20 19 26 26 H 0.96995 * 119.99893 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46974 * 59.99827 * 10 9 7 28 28 H 1.08994 * 109.46856 * 300.00152 * 10 9 7 29 29 H 1.09002 * 109.47291 * 59.99728 * 14 13 11 30 30 H 1.09002 * 109.47176 * 299.99736 * 14 13 11 31 31 H 1.09002 * 109.47398 * 185.00064 * 15 14 13 32 32 H 1.09001 * 109.47194 * 305.00244 * 15 14 13 33 33 H 1.08009 * 120.02793 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.97895 * 180.23097 * 19 18 17 35 35 H 1.08003 * 119.94271 * 179.76787 * 20 19 18 36 36 H 1.07990 * 120.02869 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0025 11 6 5.5733 -3.2323 -0.0026 12 8 6.3413 -2.2995 -0.0024 13 8 6.0440 -4.4893 -0.0041 14 6 7.4867 -4.6529 -0.0047 15 6 7.8310 -6.1436 -0.0057 16 8 7.3829 -6.7351 -1.2269 17 6 7.6123 -8.0648 -1.3890 18 6 8.2605 -8.7844 -0.3954 19 6 8.4885 -10.1366 -0.5605 20 6 8.0802 -10.7713 -1.7194 21 6 7.4385 -10.0556 -2.7129 22 7 7.0025 -10.7381 -3.9517 23 8 6.4374 -10.1079 -4.8276 24 8 7.2086 -11.9300 -4.0953 25 6 7.2039 -8.7037 -2.5505 26 1 -0.4850 0.8400 0.0004 27 1 3.6435 -3.4308 -0.8926 28 1 3.6442 -3.4320 0.8873 29 1 7.9059 -4.1841 0.8857 30 1 7.9054 -4.1824 -0.8943 31 1 8.9103 -6.2674 0.0835 32 1 7.3387 -6.6308 0.8360 33 1 8.5831 -8.2884 0.5082 34 1 8.9897 -10.6979 0.2142 35 1 8.2627 -11.8279 -1.8484 36 1 6.7022 -8.1452 -3.3267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046255851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:42 Heat of formation + Delta-G solvation = -96.180973 kcal Electronic energy + Delta-G solvation = -23446.185192 eV Core-core repulsion = 19412.124757 eV Total energy + Delta-G solvation = -4034.060434 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.53879 -40.95306 -40.22633 -38.30477 -36.89765 -36.40213 -32.53727 -32.52788 -32.09185 -30.51180 -29.42063 -27.09722 -25.73053 -24.19388 -23.54632 -22.29026 -21.27361 -20.08356 -19.01442 -18.10771 -17.87598 -17.79083 -17.55192 -17.11382 -16.66796 -16.53334 -16.21188 -15.63459 -15.04810 -14.82386 -14.27761 -14.18301 -13.85200 -13.53637 -13.26114 -12.90855 -12.84129 -12.47709 -12.31143 -12.03641 -11.87305 -11.67461 -11.52125 -11.45512 -11.36982 -11.08803 -10.79579 -10.78692 -10.30945 -10.22540 -9.92232 -9.16996 -9.09331 -8.67439 -7.07576 -6.36994 -4.12069 -0.63605 0.42506 0.90858 0.93420 2.26648 2.37308 2.41776 2.71410 2.99174 3.26230 3.41302 3.45872 3.80350 4.00974 4.08193 4.17108 4.23806 4.26028 4.39219 4.39923 4.49782 4.70132 4.81969 4.92282 5.01620 5.05424 5.15638 5.28664 5.31463 5.36585 5.49621 5.58633 5.89094 5.99761 6.37035 6.54057 7.27586 7.85537 7.89221 8.34517 9.07752 10.71996 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002028 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.846518 B =13801.568595 C =14770.258065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.092 0.908 9 S -0.139 6.139 10 C -0.100 4.100 11 C 0.481 3.519 12 O -0.489 6.489 13 O -0.354 6.354 14 C 0.066 3.934 15 C 0.059 3.941 16 O -0.295 6.295 17 C 0.142 3.858 18 C -0.162 4.162 19 C -0.075 4.075 20 C -0.098 4.098 21 C -0.004 4.004 22 N 0.026 4.974 23 O -0.150 6.150 24 O -0.156 6.156 25 C -0.092 4.092 26 H 0.272 0.728 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.611 -20.918 1.457 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.110 0.890 9 S 0.087 5.913 10 C -0.248 4.248 11 C 0.322 3.678 12 O -0.375 6.375 13 O -0.272 6.272 14 C -0.008 4.008 15 C -0.016 4.016 16 O -0.208 6.208 17 C 0.095 3.905 18 C -0.181 4.181 19 C -0.093 4.093 20 C -0.117 4.117 21 C -0.087 4.087 22 N 0.547 4.453 23 O -0.368 6.368 24 O -0.372 6.372 25 C -0.111 4.111 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 21.542 -19.191 1.938 28.915 hybrid contribution -0.682 -0.432 -0.140 0.819 sum 20.860 -19.622 1.798 28.695 Atomic orbital electron populations 1.69931 1.05865 1.27917 1.47473 1.24703 0.94475 0.98959 0.93081 0.86742 0.81790 0.83316 0.80015 1.19086 1.19762 1.16017 1.22249 0.87584 0.97794 1.59432 0.89013 1.84796 1.10243 0.98717 1.97574 1.23019 0.89604 1.04675 1.07483 1.23303 0.92092 0.80148 0.72228 1.90675 1.58861 1.43643 1.44292 1.86565 1.24294 1.31425 1.84887 1.22998 0.79774 0.93644 1.04419 1.23099 0.99858 0.92860 0.85752 1.86242 1.76369 1.18295 1.39868 1.18583 0.94609 0.84204 0.93104 1.21780 1.00807 0.95666 0.99833 1.20994 0.97994 0.93776 0.96570 1.20988 0.96828 1.01889 0.91984 1.20729 1.07307 0.93015 0.87625 1.43554 0.98617 1.01024 1.02084 1.94591 1.40568 1.66522 1.35110 1.94542 1.59493 0.97870 1.85282 1.20136 1.00826 0.91839 0.98320 0.91769 0.87030 0.87099 0.88447 0.89718 0.89190 0.90006 0.83403 0.83106 0.82766 0.81893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.97 55.49 0.78 -25.11 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.09 27.74 -169.99 -4.71 16.37 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 7 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 8 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 9 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 10 C -0.10 -1.88 6.27 36.01 0.23 -1.65 16 11 C 0.48 8.18 7.97 36.01 0.29 8.46 16 12 O -0.49 -9.48 15.61 -18.75 -0.29 -9.78 16 13 O -0.35 -4.80 10.19 -42.02 -0.43 -5.23 16 14 C 0.07 0.62 5.84 37.16 0.22 0.84 16 15 C 0.06 0.37 5.13 37.16 0.19 0.56 16 16 O -0.29 -2.64 10.11 -23.01 -0.23 -2.87 16 17 C 0.14 1.09 6.69 -39.22 -0.26 0.83 16 18 C -0.16 -0.78 9.04 -39.44 -0.36 -1.14 16 19 C -0.07 -0.31 10.04 -39.60 -0.40 -0.70 16 20 C -0.10 -0.60 9.55 -39.56 -0.38 -0.98 16 21 C 0.00 -0.04 6.85 -79.98 -0.55 -0.58 16 22 N 0.03 0.30 4.45 33.95 0.15 0.45 16 23 O -0.15 -1.90 18.45 -29.46 -0.54 -2.44 16 24 O -0.16 -1.80 18.44 -29.46 -0.54 -2.34 16 25 C -0.09 -0.81 9.49 -39.43 -0.37 -1.18 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 27 H 0.11 1.99 8.14 -51.92 -0.42 1.56 16 28 H 0.11 1.93 8.14 -51.92 -0.42 1.50 16 29 H 0.10 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.09 0.26 7.65 -51.93 -0.40 -0.14 16 32 H 0.08 0.40 7.67 -51.93 -0.40 0.00 16 33 H 0.15 0.32 6.30 -52.48 -0.33 -0.01 16 34 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 35 H 0.15 0.73 7.61 -52.48 -0.40 0.33 16 36 H 0.16 1.48 7.61 -52.49 -0.40 1.08 16 LS Contribution 344.67 15.07 5.19 5.19 Total: -1.00 -34.22 344.67 -7.42 -41.65 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -3.61 Total: -3.31 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.18 Total: -7.21 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.93 Total: -24.66 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -2.04 Total: -22.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.37 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.22 -7.42 -41.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046255851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.533 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds