Wall clock time and date at job start Tue Mar 31 2020 15:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86801 * 119.99502 * 2 1 4 4 H 1.48496 * 109.47374 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47196 * 30.00662 * 3 2 1 6 6 H 1.48498 * 109.46792 * 150.00351 * 3 2 1 7 7 C 1.38794 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99619 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00138 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99937 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46769 * 180.02562 * 10 9 7 12 12 O 1.20821 * 120.00140 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99644 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00087 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47550 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.46726 * 64.99819 * 15 14 13 17 17 C 1.35904 * 116.99628 * 180.02562 * 16 15 14 18 18 C 1.38750 * 120.05931 * 359.72554 * 17 16 15 19 19 C 1.38118 * 119.95074 * 179.78891 * 18 17 16 20 20 C 1.38299 * 120.04796 * 0.48601 * 19 18 17 21 21 C 1.38235 * 120.11352 * 359.74707 * 20 19 18 22 22 N 1.48005 * 119.97171 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99801 * 180.02562 * 22 21 20 24 24 O 1.21803 * 120.00183 * 0.02562 * 22 21 20 25 25 C 1.38175 * 120.05747 * 0.02562 * 21 20 19 26 26 H 0.96995 * 119.99893 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46974 * 59.99827 * 10 9 7 28 28 H 1.08994 * 109.46856 * 300.00152 * 10 9 7 29 29 H 1.09002 * 109.47291 * 59.99728 * 14 13 11 30 30 H 1.09002 * 109.47176 * 299.99736 * 14 13 11 31 31 H 1.09002 * 109.47398 * 185.00064 * 15 14 13 32 32 H 1.09001 * 109.47194 * 305.00244 * 15 14 13 33 33 H 1.08009 * 120.02793 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.97895 * 180.23097 * 19 18 17 35 35 H 1.08003 * 119.94271 * 179.76787 * 20 19 18 36 36 H 1.07990 * 120.02869 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0025 11 6 5.5733 -3.2323 -0.0026 12 8 6.3413 -2.2995 -0.0024 13 8 6.0440 -4.4893 -0.0041 14 6 7.4867 -4.6529 -0.0047 15 6 7.8310 -6.1436 -0.0057 16 8 7.3829 -6.7351 -1.2269 17 6 7.6123 -8.0648 -1.3890 18 6 8.2605 -8.7844 -0.3954 19 6 8.4885 -10.1366 -0.5605 20 6 8.0802 -10.7713 -1.7194 21 6 7.4385 -10.0556 -2.7129 22 7 7.0025 -10.7381 -3.9517 23 8 6.4374 -10.1079 -4.8276 24 8 7.2086 -11.9300 -4.0953 25 6 7.2039 -8.7037 -2.5505 26 1 -0.4850 0.8400 0.0004 27 1 3.6435 -3.4308 -0.8926 28 1 3.6442 -3.4320 0.8873 29 1 7.9059 -4.1841 0.8857 30 1 7.9054 -4.1824 -0.8943 31 1 8.9103 -6.2674 0.0835 32 1 7.3387 -6.6308 0.8360 33 1 8.5831 -8.2884 0.5082 34 1 8.9897 -10.6979 0.2142 35 1 8.2627 -11.8279 -1.8484 36 1 6.7022 -8.1452 -3.3267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046255851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:42 Heat of formation + Delta-G solvation = -116.891078 kcal Electronic energy + Delta-G solvation = -23447.083249 eV Core-core repulsion = 19412.124757 eV Total energy + Delta-G solvation = -4034.958492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.33042 -41.68840 -41.26615 -38.88810 -37.75839 -37.57819 -34.70494 -33.05076 -32.80536 -31.49652 -30.39831 -27.91924 -27.79377 -24.90011 -24.03393 -23.05902 -22.38872 -20.71310 -19.98926 -19.82780 -18.85456 -18.68534 -18.41077 -17.79199 -17.59003 -17.27988 -17.13160 -16.97807 -16.62328 -15.94436 -15.30559 -15.04064 -14.95130 -14.75037 -14.25244 -14.02113 -13.66034 -13.44378 -13.30566 -13.17205 -13.03715 -12.85258 -12.75897 -12.55060 -12.37777 -12.29609 -12.23848 -11.90009 -11.75254 -11.64370 -11.19800 -10.68509 -10.65233 -9.67789 -9.08194 -8.53855 -6.27819 -1.34435 -0.03657 0.22509 0.25338 0.75960 1.05067 1.31410 1.35358 1.48395 1.82322 1.87137 2.22325 2.24093 2.62090 2.84204 3.36415 3.49299 3.57599 3.66798 3.71588 3.85170 3.94054 3.99401 4.08706 4.23701 4.26230 4.38381 4.43787 4.51925 4.67426 4.87091 4.95163 5.02644 5.17340 5.32019 5.68075 6.06730 6.09961 6.38507 6.60192 6.89818 8.58486 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002028 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.846518 B =13801.568595 C =14770.258065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.045 3.955 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.232 1.232 7 C -0.533 4.533 8 H 0.064 0.936 9 S -0.160 6.160 10 C -0.093 4.093 11 C 0.493 3.507 12 O -0.516 6.516 13 O -0.350 6.350 14 C 0.054 3.946 15 C 0.058 3.942 16 O -0.325 6.325 17 C 0.131 3.869 18 C -0.143 4.143 19 C -0.060 4.060 20 C -0.093 4.093 21 C -0.025 4.025 22 N 0.028 4.972 23 O -0.206 6.206 24 O -0.150 6.150 25 C -0.116 4.116 26 H 0.278 0.722 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.186 0.814 34 H 0.196 0.804 35 H 0.170 0.830 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.599 -21.998 3.923 32.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.156 1.156 7 C -0.680 4.680 8 H 0.082 0.918 9 S 0.067 5.933 10 C -0.241 4.241 11 C 0.336 3.664 12 O -0.404 6.404 13 O -0.267 6.267 14 C -0.019 4.019 15 C -0.015 4.015 16 O -0.239 6.239 17 C 0.084 3.916 18 C -0.161 4.161 19 C -0.078 4.078 20 C -0.112 4.112 21 C -0.107 4.107 22 N 0.543 4.457 23 O -0.412 6.412 24 O -0.372 6.372 25 C -0.136 4.136 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.120 0.880 33 H 0.203 0.797 34 H 0.213 0.787 35 H 0.187 0.813 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 24.496 -20.240 4.352 32.073 hybrid contribution -1.479 -0.337 -0.800 1.715 sum 23.017 -20.577 3.552 31.077 Atomic orbital electron populations 1.70018 1.07387 1.29183 1.48659 1.25598 0.95316 1.02409 0.92739 0.85854 0.80764 0.79380 0.80286 1.18690 1.18270 1.15587 1.22414 0.89901 0.96881 1.58852 0.91819 1.84582 1.06970 1.04104 1.97684 1.22945 0.91916 1.00479 1.08781 1.22723 0.90933 0.81014 0.71768 1.90666 1.59236 1.44713 1.45821 1.86530 1.27410 1.28838 1.83960 1.23489 0.76815 0.96518 1.05079 1.23351 1.02489 0.90359 0.85349 1.86191 1.77190 1.19135 1.41363 1.18660 0.95528 0.84004 0.93398 1.22243 0.98271 0.95871 0.99723 1.21529 0.96441 0.93629 0.96199 1.21395 0.95448 1.02633 0.91707 1.20893 1.09453 0.93275 0.87128 1.43956 0.98012 1.00919 1.02775 1.94587 1.43051 1.66702 1.36831 1.94489 1.58731 0.98414 1.85521 1.20101 1.02285 0.92119 0.99119 0.91240 0.86194 0.85512 0.86504 0.90521 0.84925 0.88042 0.79665 0.78702 0.81267 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.94 13.97 21.65 0.30 -54.64 16 2 C 0.05 2.59 5.50 84.85 0.47 3.06 16 3 Si 0.92 43.48 27.74 68.60 1.90 45.39 16 4 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.23 -10.79 6.74 99.48 0.67 -10.12 16 7 C -0.53 -30.32 10.04 67.95 0.68 -29.63 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.16 -7.70 18.55 -56.49 -1.05 -8.75 16 10 C -0.09 -3.43 6.27 71.24 0.45 -2.98 16 11 C 0.49 16.13 7.97 71.24 0.57 16.70 16 12 O -0.52 -19.41 15.61 21.98 0.34 -19.06 16 13 O -0.35 -8.82 10.19 -48.74 -0.50 -9.32 16 14 C 0.05 0.87 5.84 71.98 0.42 1.29 16 15 C 0.06 0.49 5.13 71.98 0.37 0.86 16 16 O -0.32 -5.18 10.11 -89.06 -0.90 -6.08 16 17 C 0.13 1.74 6.69 22.50 0.15 1.89 16 18 C -0.14 -0.69 9.04 22.36 0.20 -0.49 16 19 C -0.06 -0.19 10.04 22.26 0.22 0.03 16 20 C -0.09 -0.89 9.55 22.28 0.21 -0.67 16 21 C -0.02 -0.43 6.85 36.36 0.25 -0.18 16 22 N 0.03 0.67 4.45 -46.51 -0.21 0.46 16 23 O -0.21 -5.78 18.45 18.88 0.35 -5.44 16 24 O -0.15 -3.52 18.44 18.88 0.35 -3.17 16 25 C -0.12 -2.11 9.49 22.37 0.21 -1.90 16 26 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.12 4.23 8.14 -2.40 -0.02 4.21 16 28 H 0.13 4.27 8.14 -2.40 -0.02 4.25 16 29 H 0.12 1.45 8.13 -2.39 -0.02 1.43 16 30 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.13 0.02 7.65 -2.39 -0.02 0.00 16 32 H 0.10 0.48 7.67 -2.39 -0.02 0.46 16 33 H 0.19 -0.50 6.30 -2.91 -0.02 -0.52 16 34 H 0.20 -1.00 8.06 -2.91 -0.02 -1.03 16 35 H 0.17 1.08 7.61 -2.91 -0.02 1.06 16 36 H 0.14 3.01 7.61 -2.92 -0.02 2.99 16 Total: -1.00 -78.27 344.67 5.89 -72.39 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: 1.09 Total: 0.24 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 4.20 Total: -12.02 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.10 Total: -54.17 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.36 Total: -43.06 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.90 Total: 45.39 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.05 Total: -8.75 kcal Total: -78.27 5.89 -72.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046255851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.505 kcal (2) G-P(sol) polarization free energy of solvation -78.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds