Wall clock time and date at job start Tue Mar 31 2020 15:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86794 * 120.00501 * 2 1 4 4 H 1.48501 * 109.47495 * 270.00521 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00194 * 3 2 1 6 6 H 1.48498 * 109.47481 * 150.00242 * 3 2 1 7 7 C 1.38767 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00379 * 0.26665 * 7 2 1 9 9 O 1.34894 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.34796 * 116.99757 * 179.97438 * 9 7 2 11 11 O 1.21549 * 119.99954 * 359.97438 * 10 9 7 12 12 C 1.47243 * 119.99749 * 180.02562 * 10 9 7 13 13 C 1.41436 * 126.42299 * 0.02562 * 12 10 9 14 14 N 1.30424 * 108.07663 * 179.97438 * 13 12 10 15 15 N 1.39932 * 108.94440 * 359.97438 * 14 13 12 16 16 C 1.39812 * 125.76259 * 179.97438 * 15 14 13 17 17 C 1.38941 * 119.69049 * 334.75191 * 16 15 14 18 18 C 1.38423 * 119.10644 * 179.72822 * 17 16 15 19 19 C 1.38792 * 118.47857 * 0.53737 * 18 17 16 20 20 C 1.38125 * 119.29777 * 359.72785 * 19 18 17 21 21 N 1.31892 * 120.84364 * 359.97438 * 20 19 18 22 22 C 1.34603 * 108.46984 * 359.75246 * 15 14 13 23 23 C 1.50700 * 126.32479 * 180.24311 * 22 15 14 24 24 F 1.39905 * 109.47072 * 90.20249 * 23 22 15 25 25 F 1.39902 * 109.47149 * 210.20115 * 23 22 15 26 26 F 1.39896 * 109.47279 * 330.20043 * 23 22 15 27 27 H 0.97005 * 119.99614 * 359.97438 * 1 2 3 28 28 H 1.08005 * 125.96879 * 0.02562 * 13 12 10 29 29 H 1.08006 * 120.44772 * 0.02562 * 17 16 15 30 30 H 1.08000 * 120.76055 * 180.28241 * 18 17 16 31 31 H 1.08000 * 120.35113 * 179.70479 * 19 18 17 32 32 H 1.07997 * 119.58354 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2486 1.6176 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4461 2.6526 0.7001 6 1 3.5461 1.4400 0.7000 7 6 2.0082 -1.2018 -0.0005 8 1 1.4682 -2.1371 -0.0053 9 8 3.3571 -1.2019 -0.0011 10 6 3.9690 -2.4030 -0.0010 11 8 3.3069 -3.4223 -0.0001 12 6 5.4394 -2.4801 -0.0010 13 6 6.3376 -1.3876 -0.0005 14 7 7.5524 -1.8624 -0.0001 15 7 7.4936 -3.2605 0.0003 16 6 8.5928 -4.1245 0.0002 17 6 9.8084 -3.6916 -0.5150 18 6 10.8903 -4.5550 -0.5038 19 6 10.7138 -5.8304 0.0144 20 6 9.4752 -6.1953 0.5049 21 7 8.4643 -5.3484 0.4863 22 6 6.2002 -3.6330 0.0056 23 6 5.6784 -5.0467 0.0130 24 9 5.5164 -5.4771 1.3343 25 9 4.4455 -5.0923 -0.6467 26 9 6.5887 -5.8833 -0.6416 27 1 -0.4850 0.8401 0.0004 28 1 6.0653 -0.3425 0.0003 29 1 9.9092 -2.6932 -0.9144 30 1 11.8486 -4.2448 -0.8933 31 1 11.5361 -6.5303 0.0336 32 1 9.3326 -7.1866 0.9089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051165502.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:07 Heat of formation + Delta-G solvation = -70.579438 kcal Electronic energy + Delta-G solvation = -27989.606356 eV Core-core repulsion = 23311.648147 eV Total energy + Delta-G solvation = -4677.958209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.76201 -47.33441 -47.14590 -41.98620 -40.28052 -38.93581 -35.40244 -34.13493 -32.91565 -32.37518 -31.51517 -30.00921 -26.75765 -25.36359 -24.25364 -24.22061 -22.32629 -21.29844 -19.97338 -19.11966 -18.19539 -18.04578 -17.82254 -17.10741 -16.80735 -16.43094 -16.00842 -15.78702 -15.14568 -14.79328 -14.62361 -14.19209 -14.10570 -14.01119 -13.91964 -13.80739 -13.67002 -13.51894 -13.30172 -13.15810 -12.50129 -12.45888 -12.33835 -12.03874 -11.37942 -11.29525 -10.76054 -10.54710 -10.43603 -10.30732 -10.01224 -9.76842 -9.57062 -9.23769 -8.74859 -8.64805 -6.44107 -4.15207 0.14787 0.79418 1.28763 1.58189 2.05100 2.71731 3.17139 3.20928 3.30764 3.32725 3.72197 3.76856 3.81757 4.06984 4.19116 4.27597 4.38498 4.48959 4.59399 4.63997 4.73020 4.89282 5.04700 5.07980 5.20348 5.29458 5.51571 5.70210 5.96343 6.06123 6.38385 6.54443 6.98580 7.49056 7.64527 7.97218 8.55906 8.92564 9.58711 10.63461 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.004013 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.608313 B = 6974.916725 C = 7998.168925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.370 4.370 8 H 0.114 0.886 9 O -0.238 6.238 10 C 0.467 3.533 11 O -0.517 6.517 12 C -0.160 4.160 13 C 0.108 3.892 14 N -0.259 5.259 15 N -0.294 5.294 16 C 0.354 3.646 17 C -0.149 4.149 18 C -0.057 4.057 19 C -0.177 4.177 20 C 0.135 3.865 21 N -0.489 5.489 22 C 0.045 3.955 23 C 0.546 3.454 24 F -0.163 7.163 25 F -0.131 7.131 26 F -0.170 7.170 27 H 0.282 0.718 28 H 0.218 0.782 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.065 -7.897 -0.895 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.446 4.446 8 H 0.132 0.868 9 O -0.146 6.146 10 C 0.313 3.687 11 O -0.411 6.411 12 C -0.174 4.174 13 C -0.080 4.080 14 N -0.077 5.077 15 N -0.070 5.070 16 C 0.128 3.872 17 C -0.171 4.171 18 C -0.083 4.083 19 C -0.197 4.197 20 C -0.023 4.023 21 N -0.201 5.201 22 C -0.083 4.083 23 C 0.490 3.510 24 F -0.144 7.144 25 F -0.112 7.112 26 F -0.151 7.151 27 H 0.092 0.908 28 H 0.234 0.766 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 23.143 -8.072 -0.567 24.517 hybrid contribution 0.037 0.691 -0.265 0.741 sum 23.180 -7.380 -0.831 24.341 Atomic orbital electron populations 1.69604 1.05761 1.28659 1.46397 1.24564 0.95033 0.98772 0.95544 0.86223 0.80423 0.81354 0.79043 1.19658 1.20639 1.18167 1.20739 0.75747 0.97251 1.50850 0.86846 1.83505 1.24165 1.30261 1.76662 1.19128 0.85542 0.83314 0.80761 1.90803 1.65672 1.35253 1.49386 1.19586 0.93710 0.90757 1.13299 1.24581 0.87813 1.01026 0.94561 1.77328 1.22311 0.84004 1.24078 1.45134 1.01847 1.05079 1.54981 1.17700 0.84993 0.87693 0.96789 1.21652 0.91498 1.02567 1.01361 1.21540 0.98578 0.92792 0.95383 1.22232 0.99226 0.97539 1.00704 1.22566 0.87053 0.98050 0.94660 1.67048 1.34856 1.02035 1.16151 1.21310 0.85809 0.94826 1.06370 1.16878 0.76458 0.82514 0.75197 1.93228 1.95421 1.90412 1.35314 1.93448 1.41307 1.96170 1.80299 1.93207 1.67078 1.73586 1.81212 0.90805 0.76610 0.83272 0.83584 0.83787 0.81408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.02 13.96 55.48 0.77 -24.24 16 2 C 0.07 1.82 5.49 -17.52 -0.10 1.73 16 3 Si 0.90 20.45 28.62 -169.99 -4.86 15.58 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.37 -10.74 10.11 30.93 0.31 -10.43 16 8 H 0.11 3.64 7.09 -52.48 -0.37 3.26 16 9 O -0.24 -6.12 8.42 -21.93 -0.18 -6.30 16 10 C 0.47 11.31 7.85 34.39 0.27 11.58 16 11 O -0.52 -13.84 12.43 -19.30 -0.24 -14.08 16 12 C -0.16 -3.17 6.09 -105.06 -0.64 -3.81 16 13 C 0.11 1.74 11.87 -16.93 -0.20 1.54 16 14 N -0.26 -4.02 12.00 30.89 0.37 -3.65 16 15 N -0.29 -4.80 3.73 -8.00 -0.03 -4.83 16 16 C 0.35 4.91 6.94 -154.37 -1.07 3.84 16 17 C -0.15 -1.53 9.73 -39.25 -0.38 -1.91 16 18 C -0.06 -0.40 10.17 -39.31 -0.40 -0.80 16 19 C -0.18 -1.15 10.11 -39.42 -0.40 -1.55 16 20 C 0.14 1.22 11.18 -17.57 -0.20 1.03 16 21 N -0.49 -6.56 6.76 -12.29 -0.08 -6.64 16 22 C 0.04 0.84 6.41 -81.42 -0.52 0.31 16 23 C 0.55 10.23 2.81 36.01 0.10 10.34 16 24 F -0.16 -3.07 17.30 2.25 0.04 -3.03 16 25 F -0.13 -2.79 13.51 2.25 0.03 -2.76 16 26 F -0.17 -2.83 13.86 2.25 0.03 -2.80 16 27 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.22 2.85 8.06 -52.48 -0.42 2.43 16 29 H 0.15 1.41 7.89 -52.48 -0.41 1.00 16 30 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 31 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -33.83 306.18 -4.38 -38.21 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -1.61 Total: -1.95 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -3.22 Total: 11.87 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 1.03 Total: -39.35 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.42 Total: -20.38 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 0.10 Total: -8.59 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.86 Total: 15.58 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.83 -4.38 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051165502.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.369 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds