Wall clock time and date at job start Tue Mar 31 2020 15:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86794 * 120.00501 * 2 1 4 4 H 1.48501 * 109.47495 * 270.00521 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00194 * 3 2 1 6 6 H 1.48498 * 109.47481 * 150.00242 * 3 2 1 7 7 C 1.38767 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00379 * 0.26665 * 7 2 1 9 9 O 1.34894 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.34796 * 116.99757 * 179.97438 * 9 7 2 11 11 O 1.21549 * 119.99954 * 359.97438 * 10 9 7 12 12 C 1.47243 * 119.99749 * 180.02562 * 10 9 7 13 13 C 1.41436 * 126.42299 * 0.02562 * 12 10 9 14 14 N 1.30424 * 108.07663 * 179.97438 * 13 12 10 15 15 N 1.39932 * 108.94440 * 359.97438 * 14 13 12 16 16 C 1.39812 * 125.76259 * 179.97438 * 15 14 13 17 17 C 1.38941 * 119.69049 * 334.75191 * 16 15 14 18 18 C 1.38423 * 119.10644 * 179.72822 * 17 16 15 19 19 C 1.38792 * 118.47857 * 0.53737 * 18 17 16 20 20 C 1.38125 * 119.29777 * 359.72785 * 19 18 17 21 21 N 1.31892 * 120.84364 * 359.97438 * 20 19 18 22 22 C 1.34603 * 108.46984 * 359.75246 * 15 14 13 23 23 C 1.50700 * 126.32479 * 180.24311 * 22 15 14 24 24 F 1.39905 * 109.47072 * 90.20249 * 23 22 15 25 25 F 1.39902 * 109.47149 * 210.20115 * 23 22 15 26 26 F 1.39896 * 109.47279 * 330.20043 * 23 22 15 27 27 H 0.97005 * 119.99614 * 359.97438 * 1 2 3 28 28 H 1.08005 * 125.96879 * 0.02562 * 13 12 10 29 29 H 1.08006 * 120.44772 * 0.02562 * 17 16 15 30 30 H 1.08000 * 120.76055 * 180.28241 * 18 17 16 31 31 H 1.08000 * 120.35113 * 179.70479 * 19 18 17 32 32 H 1.07997 * 119.58354 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2486 1.6176 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4461 2.6526 0.7001 6 1 3.5461 1.4400 0.7000 7 6 2.0082 -1.2018 -0.0005 8 1 1.4682 -2.1371 -0.0053 9 8 3.3571 -1.2019 -0.0011 10 6 3.9690 -2.4030 -0.0010 11 8 3.3069 -3.4223 -0.0001 12 6 5.4394 -2.4801 -0.0010 13 6 6.3376 -1.3876 -0.0005 14 7 7.5524 -1.8624 -0.0001 15 7 7.4936 -3.2605 0.0003 16 6 8.5928 -4.1245 0.0002 17 6 9.8084 -3.6916 -0.5150 18 6 10.8903 -4.5550 -0.5038 19 6 10.7138 -5.8304 0.0144 20 6 9.4752 -6.1953 0.5049 21 7 8.4643 -5.3484 0.4863 22 6 6.2002 -3.6330 0.0056 23 6 5.6784 -5.0467 0.0130 24 9 5.5164 -5.4771 1.3343 25 9 4.4455 -5.0923 -0.6467 26 9 6.5887 -5.8833 -0.6416 27 1 -0.4850 0.8401 0.0004 28 1 6.0653 -0.3425 0.0003 29 1 9.9092 -2.6932 -0.9144 30 1 11.8486 -4.2448 -0.8933 31 1 11.5361 -6.5303 0.0336 32 1 9.3326 -7.1866 0.9089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051165502.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:06 Heat of formation + Delta-G solvation = -91.853340 kcal Electronic energy + Delta-G solvation = -27990.528861 eV Core-core repulsion = 23311.648147 eV Total energy + Delta-G solvation = -4678.880715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.062 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.28083 -48.80507 -48.73757 -43.25083 -41.25147 -40.76354 -37.42450 -35.18787 -34.48370 -33.70939 -32.85458 -31.04358 -28.41613 -27.15734 -25.37737 -25.06595 -23.75456 -22.45830 -21.55453 -20.50791 -20.12580 -19.69282 -19.37771 -18.56235 -17.83854 -17.51514 -17.20295 -17.07763 -16.72642 -16.46417 -15.92719 -15.62156 -15.56286 -15.47679 -15.26532 -15.20004 -15.00247 -14.89814 -14.65147 -14.43842 -14.21861 -14.05524 -13.57469 -13.30414 -13.09923 -12.69378 -12.39885 -12.23839 -11.82767 -11.79092 -11.21887 -11.04482 -10.89698 -10.80775 -10.75794 -9.71013 -8.53383 -6.38896 -0.96486 0.09539 0.21291 0.37469 0.73053 1.29813 1.39364 1.44284 1.59758 1.96057 2.09264 2.31565 2.33122 2.57868 2.81877 2.95721 3.10457 3.12964 3.36996 3.65546 3.71510 3.85257 3.96433 4.05299 4.21513 4.48903 4.63549 4.81089 4.97995 5.10951 5.18439 5.46344 5.63318 5.77210 5.87604 6.46830 6.67090 6.80160 7.50537 8.58859 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.004013 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.608313 B = 6974.916725 C = 7998.168925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.237 1.237 7 C -0.403 4.403 8 H 0.060 0.940 9 O -0.236 6.236 10 C 0.475 3.525 11 O -0.550 6.550 12 C -0.196 4.196 13 C 0.120 3.880 14 N -0.246 5.246 15 N -0.279 5.279 16 C 0.297 3.703 17 C -0.144 4.144 18 C -0.049 4.049 19 C -0.146 4.146 20 C 0.118 3.882 21 N -0.526 5.526 22 C 0.047 3.953 23 C 0.546 3.454 24 F -0.166 7.166 25 F -0.152 7.152 26 F -0.155 7.155 27 H 0.291 0.709 28 H 0.247 0.753 29 H 0.155 0.845 30 H 0.189 0.811 31 H 0.189 0.811 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.191 -7.191 -1.147 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.184 4.184 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.160 1.160 7 C -0.479 4.479 8 H 0.078 0.922 9 O -0.144 6.144 10 C 0.322 3.678 11 O -0.446 6.446 12 C -0.210 4.210 13 C -0.067 4.067 14 N -0.065 5.065 15 N -0.054 5.054 16 C 0.074 3.926 17 C -0.166 4.166 18 C -0.075 4.075 19 C -0.166 4.166 20 C -0.040 4.040 21 N -0.239 5.239 22 C -0.084 4.084 23 C 0.489 3.511 24 F -0.148 7.148 25 F -0.133 7.133 26 F -0.136 7.136 27 H 0.101 0.899 28 H 0.263 0.737 29 H 0.173 0.827 30 H 0.206 0.794 31 H 0.207 0.793 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 28.316 -7.397 -0.819 29.278 hybrid contribution -1.230 0.078 -0.185 1.246 sum 27.086 -7.319 -1.004 28.076 Atomic orbital electron populations 1.69706 1.07766 1.30436 1.47349 1.25614 0.95968 1.02876 0.93895 0.85114 0.79606 0.75225 0.80116 1.18097 1.19314 1.15993 1.20363 0.77145 0.96094 1.54300 0.92239 1.83494 1.22275 1.30706 1.77940 1.19953 0.87385 0.82433 0.78028 1.90781 1.67200 1.36310 1.50296 1.19248 0.91242 0.92900 1.17619 1.24932 0.86791 1.01420 0.93555 1.77332 1.21686 0.83677 1.23781 1.45515 1.01651 1.05705 1.52543 1.18106 0.85287 0.88385 1.00773 1.21899 0.90900 1.03440 1.00350 1.22088 0.99056 0.92216 0.94091 1.22763 0.99074 0.97854 0.96894 1.23178 0.87432 0.98428 0.94941 1.66925 1.37170 1.02505 1.17264 1.21267 0.87173 0.94193 1.05761 1.16908 0.75964 0.83237 0.74950 1.93210 1.95448 1.90517 1.35590 1.93404 1.42852 1.96333 1.80697 1.93226 1.66305 1.73196 1.80894 0.89925 0.73745 0.82695 0.79365 0.79331 0.79183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.91 13.96 21.63 0.30 -54.61 16 2 C 0.02 0.97 5.49 84.88 0.47 1.43 16 3 Si 0.98 41.79 28.62 68.60 1.96 43.75 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.24 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.40 -24.77 10.11 67.95 0.69 -24.08 16 8 H 0.06 4.18 7.09 -2.91 -0.02 4.16 16 9 O -0.24 -12.54 8.42 10.28 0.09 -12.45 16 10 C 0.48 24.10 7.85 70.19 0.55 24.66 16 11 O -0.55 -31.55 12.43 19.68 0.24 -31.31 16 12 C -0.20 -7.87 6.09 -20.15 -0.12 -7.99 16 13 C 0.12 3.70 11.87 85.69 1.02 4.72 16 14 N -0.25 -7.22 12.00 -56.18 -0.67 -7.89 16 15 N -0.28 -8.86 3.73 -179.22 -0.67 -9.53 16 16 C 0.30 7.75 6.94 132.76 0.92 8.67 16 17 C -0.14 -2.50 9.73 22.48 0.22 -2.28 16 18 C -0.05 -0.43 10.17 22.45 0.23 -0.20 16 19 C -0.15 -1.13 10.11 22.38 0.23 -0.90 16 20 C 0.12 1.76 11.18 84.66 0.95 2.71 16 21 N -0.53 -13.29 6.76 -192.81 -1.30 -14.59 16 22 C 0.05 1.78 6.41 42.11 0.27 2.05 16 23 C 0.55 21.09 2.81 71.24 0.20 21.29 16 24 F -0.17 -6.51 17.30 44.97 0.78 -5.74 16 25 F -0.15 -6.81 13.51 44.97 0.61 -6.20 16 26 F -0.16 -5.20 13.86 44.97 0.62 -4.58 16 27 H 0.29 15.70 8.31 -92.70 -0.77 14.93 16 28 H 0.25 5.83 8.06 -2.91 -0.02 5.81 16 29 H 0.16 2.43 7.89 -2.91 -0.02 2.41 16 30 H 0.19 0.12 8.06 -2.91 -0.02 0.09 16 31 H 0.19 -0.16 8.06 -2.91 -0.02 -0.19 16 32 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -81.13 306.18 8.78 -72.35 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: 1.21 Total: 0.72 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 5.61 Total: 30.08 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.35 Total: -86.62 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: 0.33 Total: -43.76 kcal Atomic # 9 Polarization: -18.53 SS G_CDS: 2.01 Total: -16.52 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.96 Total: 43.75 kcal Total: -81.13 8.78 -72.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051165502.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.506 kcal (2) G-P(sol) polarization free energy of solvation -81.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds