Wall clock time and date at job start Tue Mar 31 2020 14:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47260 * 2 1 4 4 H 1.09003 * 109.46531 * 56.62576 * 3 2 1 5 5 C 1.50699 * 109.47047 * 176.61643 * 3 2 1 6 6 H 1.08004 * 119.99491 * 120.00792 * 5 3 2 7 7 C 1.37875 * 120.00609 * 300.00652 * 5 3 2 8 8 N 1.31518 * 119.99557 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00313 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47513 * 59.99895 * 9 7 5 11 11 H 1.48502 * 109.47225 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47126 * 299.99513 * 9 7 5 13 13 N 1.46491 * 109.47668 * 296.62188 * 3 2 1 14 14 S 1.65598 * 120.00238 * 145.12648 * 13 3 2 15 15 O 1.42102 * 106.40304 * 181.04554 * 14 13 3 16 16 O 1.42099 * 106.40069 * 48.13169 * 14 13 3 17 17 C 1.76202 * 107.22102 * 294.58781 * 14 13 3 18 18 C 1.35507 * 120.04901 * 114.66416 * 17 14 13 19 19 C 1.39491 * 121.57864 * 179.71314 * 18 17 14 20 20 C 1.35503 * 121.58349 * 0.62025 * 19 18 17 21 21 C 1.41761 * 119.90204 * 359.40683 * 20 19 18 22 22 N 1.32333 * 131.01319 * 180.27707 * 21 20 19 23 23 S 1.55537 * 109.42195 * 179.97438 * 22 21 20 24 24 N 1.55534 * 100.20877 * 0.02562 * 23 22 21 25 25 C 1.32335 * 109.41788 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47189 * 185.40910 * 1 2 3 27 27 H 1.09002 * 109.47076 * 305.40915 * 1 2 3 28 28 H 1.09002 * 109.46977 * 65.40632 * 1 2 3 29 29 H 1.09006 * 109.46723 * 240.00399 * 2 1 3 30 30 H 1.09000 * 109.47065 * 120.00499 * 2 1 3 31 31 H 0.96999 * 119.99799 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99862 * 325.13442 * 13 3 2 33 33 H 1.08003 * 119.20641 * 0.02562 * 18 17 14 34 34 H 1.07999 * 119.21227 * 180.30523 * 19 18 17 35 35 H 1.08004 * 120.05569 * 179.68101 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6281 1.9734 0.8582 5 6 3.5447 1.4432 0.0839 6 1 4.1291 1.8953 -0.7039 7 6 4.1752 0.8669 1.1661 8 7 3.4635 0.3170 2.1256 9 14 6.0403 0.8686 1.2703 10 1 6.5349 2.2687 1.2708 11 1 6.4667 0.1931 2.5222 12 1 6.6020 0.1455 0.1011 13 7 1.6194 2.1093 -1.2347 14 16 1.2260 3.7177 -1.2144 15 8 0.8420 4.0536 -2.5407 16 8 2.2737 4.3783 -0.5179 17 6 -0.2183 3.8890 -0.2198 18 6 -0.1613 4.5765 0.9466 19 6 -1.2862 4.7368 1.7557 20 6 -2.4848 4.2021 1.4188 21 6 -2.6179 3.4699 0.2122 22 7 -3.6656 2.8674 -0.3269 23 16 -3.2478 2.2092 -1.6728 24 7 -1.7436 2.6025 -1.7168 25 6 -1.4416 3.3077 -0.6385 26 1 -0.3633 -1.0231 0.0969 27 1 -0.3633 0.5955 0.8376 28 1 -0.3633 0.4277 -0.9345 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.9070 -0.0888 2.8868 32 1 1.5712 1.6086 -2.0640 33 1 0.7764 5.0150 1.2546 34 1 -1.1986 5.2964 2.6753 35 1 -3.3386 4.3372 2.0662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:12 Heat of formation + Delta-G solvation = 3.274506 kcal Electronic energy + Delta-G solvation = -24228.097142 eV Core-core repulsion = 20673.395043 eV Total energy + Delta-G solvation = -3554.702099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92124 -36.81351 -36.29511 -35.89464 -35.15088 -33.96843 -32.14305 -30.61978 -30.50394 -27.62064 -26.60016 -23.06288 -22.69469 -22.62001 -20.18424 -19.73989 -18.73369 -17.66564 -17.08811 -16.84039 -16.20833 -15.82216 -15.77818 -15.25975 -14.96109 -14.43332 -13.70317 -13.12756 -13.01812 -12.88153 -12.41734 -12.19517 -12.02321 -11.87683 -11.70393 -11.58370 -11.45674 -11.38283 -11.28519 -11.18125 -10.93441 -10.90244 -10.75615 -10.32764 -10.18514 -9.84306 -9.81027 -9.67261 -8.81524 -8.78873 -8.41607 -8.20183 -6.05481 -4.11621 -0.37237 1.08615 1.31383 1.35940 1.49801 1.70401 3.22845 3.34560 3.37559 3.43121 3.75997 4.16037 4.32702 4.45211 4.68285 4.72485 4.97695 4.99787 5.23377 5.31754 5.49892 5.77793 6.01379 6.05285 6.06624 6.10839 6.12929 6.29710 6.50293 6.71521 6.77176 6.90727 7.10752 7.58118 7.65107 7.91554 8.12872 8.25569 8.91516 9.54319 10.99053 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.005017 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.254570 B = 5580.025602 C = 5795.536430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.283 3.717 4 H 0.039 0.961 5 C -0.518 4.518 6 H 0.064 0.936 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.277 1.277 13 N -1.093 6.093 14 S 2.693 3.307 15 O -0.971 6.971 16 O -0.947 6.947 17 C -0.623 4.623 18 C 0.033 3.967 19 C -0.119 4.119 20 C -0.017 4.017 21 C 0.062 3.938 22 N -0.591 5.591 23 S 0.800 5.200 24 N -0.584 5.584 25 C 0.150 3.850 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.105 0.895 31 H 0.263 0.737 32 H 0.407 0.593 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.870 4.562 -1.897 14.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.179 3.821 4 H 0.057 0.943 5 C -0.558 4.558 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.854 5.854 14 S 2.778 3.222 15 O -0.961 6.961 16 O -0.937 6.937 17 C -0.713 4.713 18 C 0.007 3.993 19 C -0.144 4.144 20 C -0.042 4.042 21 C -0.098 4.098 22 N -0.442 5.442 23 S 0.847 5.153 24 N -0.434 5.434 25 C -0.010 4.010 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.241 0.759 33 H 0.178 0.822 34 H 0.166 0.834 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.705 4.010 -3.475 15.633 hybrid contribution 1.238 0.335 1.521 1.990 sum -13.467 4.345 -1.953 14.284 Atomic orbital electron populations 1.21864 0.99516 0.99297 0.99947 1.21849 0.91527 0.99577 1.03372 1.18525 0.94413 0.89882 0.79299 0.94304 1.21495 0.91061 1.36825 1.06417 0.91749 1.24891 0.98582 0.94985 0.95360 1.69834 1.35276 1.38340 1.09893 0.86568 0.85286 0.78486 0.77192 1.19941 1.21342 1.20263 1.55412 1.81937 1.29139 1.18907 1.02016 0.73290 0.73795 0.73142 1.93537 1.84009 1.83129 1.35415 1.93608 1.51269 1.73578 1.75219 1.30605 1.15965 1.11414 1.13284 1.20964 0.99966 0.89052 0.89295 1.20962 0.91946 1.00709 1.00798 1.20507 0.98684 0.93136 0.91842 1.21284 0.87344 1.01863 0.99306 1.72163 1.34297 1.20382 1.17390 1.78477 0.93575 1.33730 1.09494 1.72239 1.22084 1.22144 1.26916 1.20185 0.95434 0.96406 0.88968 0.94641 0.94370 0.94067 0.93902 0.87658 0.92709 0.75915 0.82159 0.83399 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.72 37.16 0.36 -2.44 16 2 C -0.12 -2.72 5.36 -26.73 -0.14 -2.86 16 3 C 0.28 6.63 2.16 -69.09 -0.15 6.48 16 4 H 0.04 0.97 7.87 -51.93 -0.41 0.56 16 5 C -0.52 -13.76 8.84 -34.44 -0.30 -14.06 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.12 11.30 55.43 0.63 -23.50 16 9 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -1.09 -22.52 4.94 -5.89 -0.03 -22.55 16 14 S 2.69 54.20 5.57 -107.50 -0.60 53.60 16 15 O -0.97 -20.77 17.94 -57.17 -1.03 -21.79 16 16 O -0.95 -21.25 16.66 -57.17 -0.95 -22.20 16 17 C -0.62 -10.84 5.79 -39.21 -0.23 -11.07 16 18 C 0.03 0.48 9.43 -40.09 -0.38 0.10 16 19 C -0.12 -1.34 9.89 -40.09 -0.40 -1.73 16 20 C -0.02 -0.20 10.09 -39.21 -0.40 -0.59 16 21 C 0.06 0.91 7.17 -83.16 -0.60 0.32 16 22 N -0.59 -8.11 11.44 25.63 0.29 -7.82 16 23 S 0.80 9.61 23.60 -107.50 -2.54 7.08 16 24 N -0.58 -9.44 11.14 25.62 0.29 -9.15 16 25 C 0.15 2.52 6.86 -83.16 -0.57 1.95 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.72 7.62 -51.93 -0.40 0.33 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.11 2.59 5.99 -51.93 -0.31 2.28 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.41 7.66 8.84 -34.47 -0.30 7.35 16 33 H 0.16 2.17 7.22 -52.48 -0.38 1.79 16 34 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -33.11 328.24 -10.36 -43.47 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -3.46 Total: 4.21 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.89 Total: -22.32 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 1.18 Total: -63.02 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.98 Total: -44.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 63.81 SS G_CDS: -3.14 Total: 60.68 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.11 -10.36 -43.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.745 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds