Wall clock time and date at job start Tue Mar 31 2020 14:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47260 * 2 1 4 4 H 1.09003 * 109.46531 * 56.62576 * 3 2 1 5 5 C 1.50699 * 109.47047 * 176.61643 * 3 2 1 6 6 H 1.08004 * 119.99491 * 120.00792 * 5 3 2 7 7 C 1.37875 * 120.00609 * 300.00652 * 5 3 2 8 8 N 1.31518 * 119.99557 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00313 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47513 * 59.99895 * 9 7 5 11 11 H 1.48502 * 109.47225 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47126 * 299.99513 * 9 7 5 13 13 N 1.46491 * 109.47668 * 296.62188 * 3 2 1 14 14 S 1.65598 * 120.00238 * 145.12648 * 13 3 2 15 15 O 1.42102 * 106.40304 * 181.04554 * 14 13 3 16 16 O 1.42099 * 106.40069 * 48.13169 * 14 13 3 17 17 C 1.76202 * 107.22102 * 294.58781 * 14 13 3 18 18 C 1.35507 * 120.04901 * 114.66416 * 17 14 13 19 19 C 1.39491 * 121.57864 * 179.71314 * 18 17 14 20 20 C 1.35503 * 121.58349 * 0.62025 * 19 18 17 21 21 C 1.41761 * 119.90204 * 359.40683 * 20 19 18 22 22 N 1.32333 * 131.01319 * 180.27707 * 21 20 19 23 23 S 1.55537 * 109.42195 * 179.97438 * 22 21 20 24 24 N 1.55534 * 100.20877 * 0.02562 * 23 22 21 25 25 C 1.32335 * 109.41788 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47189 * 185.40910 * 1 2 3 27 27 H 1.09002 * 109.47076 * 305.40915 * 1 2 3 28 28 H 1.09002 * 109.46977 * 65.40632 * 1 2 3 29 29 H 1.09006 * 109.46723 * 240.00399 * 2 1 3 30 30 H 1.09000 * 109.47065 * 120.00499 * 2 1 3 31 31 H 0.96999 * 119.99799 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99862 * 325.13442 * 13 3 2 33 33 H 1.08003 * 119.20641 * 0.02562 * 18 17 14 34 34 H 1.07999 * 119.21227 * 180.30523 * 19 18 17 35 35 H 1.08004 * 120.05569 * 179.68101 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6281 1.9734 0.8582 5 6 3.5447 1.4432 0.0839 6 1 4.1291 1.8953 -0.7039 7 6 4.1752 0.8669 1.1661 8 7 3.4635 0.3170 2.1256 9 14 6.0403 0.8686 1.2703 10 1 6.5349 2.2687 1.2708 11 1 6.4667 0.1931 2.5222 12 1 6.6020 0.1455 0.1011 13 7 1.6194 2.1093 -1.2347 14 16 1.2260 3.7177 -1.2144 15 8 0.8420 4.0536 -2.5407 16 8 2.2737 4.3783 -0.5179 17 6 -0.2183 3.8890 -0.2198 18 6 -0.1613 4.5765 0.9466 19 6 -1.2862 4.7368 1.7557 20 6 -2.4848 4.2021 1.4188 21 6 -2.6179 3.4699 0.2122 22 7 -3.6656 2.8674 -0.3269 23 16 -3.2478 2.2092 -1.6728 24 7 -1.7436 2.6025 -1.7168 25 6 -1.4416 3.3077 -0.6385 26 1 -0.3633 -1.0231 0.0969 27 1 -0.3633 0.5955 0.8376 28 1 -0.3633 0.4277 -0.9345 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.9070 -0.0888 2.8868 32 1 1.5712 1.6086 -2.0640 33 1 0.7764 5.0150 1.2546 34 1 -1.1986 5.2964 2.6753 35 1 -3.3386 4.3372 2.0662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:11 Heat of formation + Delta-G solvation = -21.728128 kcal Electronic energy + Delta-G solvation = -24229.181337 eV Core-core repulsion = 20673.395043 eV Total energy + Delta-G solvation = -3555.786295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97551 -38.30772 -37.71600 -37.46010 -36.80812 -35.04848 -34.11478 -32.27338 -31.57765 -28.69869 -28.48691 -24.89540 -23.78466 -23.75190 -21.95599 -20.83316 -20.18868 -18.82006 -18.70221 -18.45527 -17.78530 -17.13008 -16.93103 -16.87831 -16.22358 -15.94602 -15.41165 -14.87148 -14.72129 -13.92269 -13.62410 -13.46316 -13.37030 -13.27623 -13.12195 -13.07713 -13.01357 -12.96279 -12.77530 -12.68438 -12.60397 -12.58788 -12.07536 -11.99576 -11.74124 -11.60747 -11.54016 -11.33790 -10.43786 -10.00195 -9.88377 -9.78585 -8.07793 -6.20126 -1.41706 -0.42938 0.24679 0.33728 0.37723 0.71902 1.45420 1.47364 1.54570 2.09131 2.31896 2.48454 2.82538 3.06336 3.18607 3.49695 3.79755 3.89661 3.93519 4.14213 4.40401 4.47015 4.53110 4.63290 4.70251 4.81619 5.01755 5.08512 5.09422 5.16101 5.24933 5.35899 5.68825 5.70527 5.77733 6.00462 6.29023 6.44157 6.85429 7.47933 8.94611 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.005017 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.254570 B = 5580.025602 C = 5795.536430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.292 3.708 4 H 0.023 0.977 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.272 1.272 13 N -1.095 6.095 14 S 2.701 3.299 15 O -0.991 6.991 16 O -0.983 6.983 17 C -0.652 4.652 18 C 0.038 3.962 19 C -0.118 4.118 20 C -0.001 4.001 21 C 0.043 3.957 22 N -0.597 5.597 23 S 0.881 5.119 24 N -0.630 5.630 25 C 0.128 3.872 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.265 0.735 32 H 0.413 0.587 33 H 0.162 0.838 34 H 0.194 0.806 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.889 4.557 -0.889 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.187 3.813 4 H 0.041 0.959 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.773 3.227 10 H -0.205 1.205 11 H -0.203 1.203 12 H -0.198 1.198 13 N -0.855 5.855 14 S 2.792 3.208 15 O -0.982 6.982 16 O -0.973 6.973 17 C -0.747 4.747 18 C 0.011 3.989 19 C -0.143 4.143 20 C -0.026 4.026 21 C -0.115 4.115 22 N -0.451 5.451 23 S 0.928 5.072 24 N -0.482 5.482 25 C -0.030 4.030 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.247 0.753 33 H 0.180 0.820 34 H 0.211 0.789 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.664 4.006 -2.493 17.319 hybrid contribution 1.693 0.338 1.175 2.089 sum -14.971 4.344 -1.317 15.644 Atomic orbital electron populations 1.21718 0.96912 1.00485 1.00256 1.21676 0.93814 0.98142 1.02099 1.18237 0.92717 0.90659 0.79734 0.95948 1.21784 0.92948 1.36982 1.06323 0.93212 1.25501 1.02053 0.94824 0.95205 1.69925 1.36390 1.38511 1.10066 0.85791 0.81238 0.78124 0.77588 1.20471 1.20326 1.19754 1.55220 1.82691 1.29187 1.18386 1.01256 0.73604 0.73056 0.72871 1.93496 1.84465 1.83196 1.36996 1.93552 1.53819 1.74220 1.75687 1.29948 1.14773 1.15287 1.14704 1.21304 1.01524 0.87458 0.88569 1.21361 0.90407 1.00849 1.01662 1.21072 0.99967 0.90776 0.90788 1.21554 0.86719 1.02961 1.00244 1.72088 1.34268 1.20506 1.18216 1.78077 0.90815 1.30805 1.07537 1.72021 1.24922 1.23430 1.27828 1.20260 0.95896 0.97079 0.89754 0.92693 0.94978 0.93019 0.93837 0.90143 0.92578 0.75284 0.82031 0.78887 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.72 71.98 0.70 -4.32 16 2 C -0.12 -5.21 5.36 30.59 0.16 -5.05 16 3 C 0.29 13.99 2.16 44.25 0.10 14.08 16 4 H 0.02 1.16 7.87 -2.39 -0.02 1.14 16 5 C -0.54 -29.44 8.84 25.60 0.23 -29.21 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.02 1.30 5.30 84.65 0.45 1.75 16 8 N -0.91 -49.47 11.30 21.45 0.24 -49.23 16 9 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 N -1.09 -46.47 4.94 -172.54 -0.85 -47.32 16 14 S 2.70 112.41 5.57 -56.49 -0.31 112.09 16 15 O -0.99 -43.79 17.94 -128.00 -2.30 -46.08 16 16 O -0.98 -46.01 16.66 -128.00 -2.13 -48.14 16 17 C -0.65 -22.72 5.79 22.51 0.13 -22.59 16 18 C 0.04 1.06 9.43 21.94 0.21 1.27 16 19 C -0.12 -2.29 9.89 21.94 0.22 -2.07 16 20 C 0.00 -0.03 10.09 22.51 0.23 0.20 16 21 C 0.04 1.17 7.17 41.97 0.30 1.47 16 22 N -0.60 -14.76 11.44 -72.83 -0.83 -15.59 16 23 S 0.88 19.28 23.60 -56.49 -1.33 17.95 16 24 N -0.63 -19.80 11.14 -72.86 -0.81 -20.61 16 25 C 0.13 4.19 6.86 41.97 0.29 4.48 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.78 7.62 -2.39 -0.02 1.76 16 29 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.08 4.01 5.99 -2.39 -0.01 3.99 16 31 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.41 16.04 8.84 -96.75 -0.85 15.19 16 33 H 0.16 4.37 7.22 -2.91 -0.02 4.35 16 34 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 35 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -72.71 328.24 -3.01 -75.72 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.30 Total: 15.73 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 3.00 Total: -39.98 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -2.25 Total: -132.75 kcal Atomic # 8 Polarization: -89.80 SS G_CDS: -4.43 Total: -94.23 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 131.69 SS G_CDS: -1.65 Total: 130.04 kcal Total: -72.71 -3.01 -75.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.989 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds