Wall clock time and date at job start Tue Mar 31 2020 14:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47216 * 2 1 4 4 H 1.08999 * 109.47096 * 303.66897 * 3 2 1 5 5 C 1.50702 * 109.46864 * 183.66541 * 3 2 1 6 6 H 1.07998 * 119.99988 * 239.99954 * 5 3 2 7 7 C 1.37879 * 119.99713 * 60.00409 * 5 3 2 8 8 N 1.31513 * 120.00297 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99826 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46724 * 60.00182 * 9 7 5 11 11 H 1.48492 * 109.47103 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47371 * 300.00427 * 9 7 5 13 13 N 1.46501 * 109.46568 * 63.66900 * 3 2 1 14 14 S 1.65604 * 119.99699 * 214.69902 * 13 3 2 15 15 O 1.42107 * 106.40214 * 313.49939 * 14 13 3 16 16 O 1.42092 * 106.40501 * 180.57620 * 14 13 3 17 17 C 1.76205 * 107.21703 * 67.03513 * 14 13 3 18 18 C 1.35506 * 120.04730 * 110.48426 * 17 14 13 19 19 C 1.39497 * 121.57673 * 179.70898 * 18 17 14 20 20 C 1.35509 * 121.58423 * 0.63160 * 19 18 17 21 21 C 1.41755 * 119.89794 * 359.39839 * 20 19 18 22 22 N 1.32331 * 131.00800 * 180.27597 * 21 20 19 23 23 S 1.55544 * 109.42529 * 180.02562 * 22 21 20 24 24 N 1.55535 * 100.19979 * 0.02562 * 23 22 21 25 25 C 1.32326 * 109.42438 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47099 * 304.61845 * 1 2 3 27 27 H 1.09000 * 109.46836 * 64.61140 * 1 2 3 28 28 H 1.08999 * 109.47510 * 184.60964 * 1 2 3 29 29 H 1.09002 * 109.47086 * 240.00150 * 2 1 3 30 30 H 1.08994 * 109.47040 * 120.00398 * 2 1 3 31 31 H 0.97000 * 119.99917 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00692 * 34.70538 * 13 3 2 33 33 H 1.07998 * 119.21133 * 0.02562 * 18 17 14 34 34 H 1.07999 * 119.20822 * 180.30689 * 19 18 17 35 35 H 1.08000 * 120.04779 * 179.67182 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6240 1.9750 -0.8553 5 6 3.5444 1.4434 -0.0908 6 1 4.1325 1.8940 0.6949 7 6 4.1697 0.8690 -1.1772 8 7 3.4535 0.3199 -2.1338 9 14 6.0343 0.8707 -1.2901 10 1 6.6014 0.1456 -0.1249 11 1 6.4548 0.1964 -2.5445 12 1 6.5290 2.2709 -1.2903 13 7 1.6252 2.1070 1.2380 14 16 1.2357 3.7166 1.2233 15 8 2.2632 4.3714 0.4918 16 8 0.8938 4.0589 2.5593 17 6 -0.2381 3.8879 0.2729 18 6 -1.4023 4.2218 0.8806 19 6 -2.5864 4.3718 0.1586 20 6 -2.6297 4.1781 -1.1819 21 6 -1.4491 3.8266 -1.8835 22 7 -1.2399 3.5937 -3.1693 23 16 0.2590 3.2445 -3.3946 24 7 0.7878 3.3464 -1.9354 25 6 -0.2082 3.6741 -1.1282 26 1 -0.3633 0.5838 0.8457 27 1 -0.3633 0.4406 -0.9284 28 1 -0.3634 -1.0243 0.0826 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8934 -0.0838 -2.8982 32 1 1.5787 1.6044 2.0662 33 1 -1.4127 4.3806 1.9488 34 1 -3.4916 4.6437 0.6812 35 1 -3.5612 4.2958 -1.7156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:15 Heat of formation + Delta-G solvation = 11.172605 kcal Electronic energy + Delta-G solvation = -24563.253394 eV Core-core repulsion = 21008.893783 eV Total energy + Delta-G solvation = -3554.359612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75666 -36.82801 -36.19174 -35.87287 -35.10477 -33.75560 -32.08759 -30.61784 -30.39593 -27.49241 -26.55311 -23.01565 -22.58007 -22.49365 -20.19366 -19.56280 -18.57232 -17.52869 -17.18300 -16.66303 -16.19367 -15.78232 -15.49225 -15.13789 -14.96729 -14.43129 -13.65507 -13.12639 -12.96399 -12.83436 -12.41399 -12.14780 -11.95809 -11.80652 -11.63535 -11.47536 -11.37297 -11.24091 -11.16412 -11.09879 -10.88087 -10.76603 -10.59498 -10.18539 -10.11995 -9.81951 -9.72373 -9.49402 -8.73154 -8.62801 -8.31167 -8.10129 -5.99299 -4.01401 -0.19183 1.09150 1.41358 1.66094 1.68368 1.96653 3.30291 3.36899 3.39231 3.46063 3.84953 4.28054 4.32420 4.49221 4.72040 4.83664 4.98955 5.15077 5.31050 5.38264 5.56700 5.84810 6.05454 6.06008 6.11001 6.12790 6.21551 6.32267 6.57040 6.78076 6.87949 6.97528 7.17324 7.64068 7.73243 8.00322 8.18095 8.34059 8.98277 9.61271 11.05934 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.006644 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.739312 B = 4213.177036 C = 5111.530133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.259 3.741 4 H 0.084 0.916 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.276 1.276 13 N -1.096 6.096 14 S 2.689 3.311 15 O -0.930 6.930 16 O -0.987 6.987 17 C -0.618 4.618 18 C 0.017 3.983 19 C -0.129 4.129 20 C -0.013 4.013 21 C 0.057 3.943 22 N -0.607 5.607 23 S 0.832 5.168 24 N -0.546 5.546 25 C 0.131 3.869 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.105 0.895 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.403 0.597 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.865 4.599 0.477 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.155 3.845 4 H 0.101 0.899 5 C -0.546 4.546 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.857 5.857 14 S 2.774 3.226 15 O -0.920 6.920 16 O -0.977 6.977 17 C -0.708 4.708 18 C -0.009 4.009 19 C -0.154 4.154 20 C -0.038 4.038 21 C -0.102 4.102 22 N -0.458 5.458 23 S 0.880 5.120 24 N -0.396 5.396 25 C -0.028 4.028 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.236 0.764 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.265 4.780 -1.512 12.330 hybrid contribution -0.519 -0.226 1.291 1.409 sum -11.784 4.554 -0.221 12.635 Atomic orbital electron populations 1.21816 0.99436 0.99344 0.99692 1.21917 0.91495 1.00045 1.03314 1.19159 0.94870 0.90026 0.80456 0.89906 1.21456 0.91193 1.36039 1.05954 0.92175 1.24805 0.98155 0.95221 0.95449 1.69814 1.34956 1.38921 1.09880 0.86635 0.85786 0.78361 0.77107 1.20427 1.21367 1.20113 1.55550 1.82055 1.29178 1.18950 1.02124 0.73783 0.73938 0.72735 1.93629 1.52092 1.73133 1.73101 1.93507 1.85269 1.83563 1.35341 1.30595 1.21672 1.16012 1.02512 1.20774 0.90477 0.88621 1.01032 1.20849 0.98720 1.02028 0.93795 1.20481 0.94898 0.94855 0.93595 1.21265 0.96992 1.04786 0.87129 1.72163 1.26446 1.25581 1.21659 1.78869 0.88387 1.36583 1.08209 1.72579 1.34075 1.23372 1.09600 1.20249 0.87521 1.00327 0.94680 0.94172 0.94832 0.94462 0.87671 0.94110 0.92944 0.76367 0.82853 0.83876 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.85 37.16 0.37 -2.35 16 2 C -0.13 -2.83 5.36 -26.73 -0.14 -2.97 16 3 C 0.26 6.15 2.15 -69.08 -0.15 6.00 16 4 H 0.08 2.02 4.06 -51.93 -0.21 1.81 16 5 C -0.51 -13.71 8.84 -34.44 -0.30 -14.01 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.90 -23.91 11.30 55.43 0.63 -23.28 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -1.10 -22.50 4.78 -5.88 -0.03 -22.53 16 14 S 2.69 54.02 5.61 -107.50 -0.60 53.41 16 15 O -0.93 -22.50 17.41 -57.17 -1.00 -23.50 16 16 O -0.99 -19.30 16.91 -57.17 -0.97 -20.26 16 17 C -0.62 -10.76 5.94 -39.21 -0.23 -11.00 16 18 C 0.02 0.22 9.43 -40.09 -0.38 -0.15 16 19 C -0.13 -1.35 9.89 -40.09 -0.40 -1.75 16 20 C -0.01 -0.16 10.09 -39.21 -0.40 -0.55 16 21 C 0.06 0.92 7.16 -83.17 -0.60 0.32 16 22 N -0.61 -9.64 11.44 25.63 0.29 -9.35 16 23 S 0.83 13.43 23.60 -107.50 -2.54 10.89 16 24 N -0.55 -11.12 8.22 25.62 0.21 -10.91 16 25 C 0.13 2.43 6.41 -83.17 -0.53 1.90 16 26 H 0.04 0.68 7.58 -51.93 -0.39 0.29 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.11 2.60 5.98 -51.93 -0.31 2.29 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.40 7.21 8.83 -34.47 -0.30 6.90 16 33 H 0.15 1.70 7.23 -52.49 -0.38 1.32 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -33.44 320.89 -10.30 -43.74 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.26 Total: 3.49 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -2.86 Total: -22.92 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: 1.10 Total: -66.07 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.96 Total: -43.76 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 67.44 SS G_CDS: -3.14 Total: 64.30 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.44 -10.30 -43.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.909 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds