Wall clock time and date at job start Tue Mar 31 2020 14:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47216 * 2 1 4 4 H 1.08999 * 109.47096 * 303.66897 * 3 2 1 5 5 C 1.50702 * 109.46864 * 183.66541 * 3 2 1 6 6 H 1.07998 * 119.99988 * 239.99954 * 5 3 2 7 7 C 1.37879 * 119.99713 * 60.00409 * 5 3 2 8 8 N 1.31513 * 120.00297 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99826 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46724 * 60.00182 * 9 7 5 11 11 H 1.48492 * 109.47103 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47371 * 300.00427 * 9 7 5 13 13 N 1.46501 * 109.46568 * 63.66900 * 3 2 1 14 14 S 1.65604 * 119.99699 * 214.69902 * 13 3 2 15 15 O 1.42107 * 106.40214 * 313.49939 * 14 13 3 16 16 O 1.42092 * 106.40501 * 180.57620 * 14 13 3 17 17 C 1.76205 * 107.21703 * 67.03513 * 14 13 3 18 18 C 1.35506 * 120.04730 * 110.48426 * 17 14 13 19 19 C 1.39497 * 121.57673 * 179.70898 * 18 17 14 20 20 C 1.35509 * 121.58423 * 0.63160 * 19 18 17 21 21 C 1.41755 * 119.89794 * 359.39839 * 20 19 18 22 22 N 1.32331 * 131.00800 * 180.27597 * 21 20 19 23 23 S 1.55544 * 109.42529 * 180.02562 * 22 21 20 24 24 N 1.55535 * 100.19979 * 0.02562 * 23 22 21 25 25 C 1.32326 * 109.42438 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47099 * 304.61845 * 1 2 3 27 27 H 1.09000 * 109.46836 * 64.61140 * 1 2 3 28 28 H 1.08999 * 109.47510 * 184.60964 * 1 2 3 29 29 H 1.09002 * 109.47086 * 240.00150 * 2 1 3 30 30 H 1.08994 * 109.47040 * 120.00398 * 2 1 3 31 31 H 0.97000 * 119.99917 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00692 * 34.70538 * 13 3 2 33 33 H 1.07998 * 119.21133 * 0.02562 * 18 17 14 34 34 H 1.07999 * 119.20822 * 180.30689 * 19 18 17 35 35 H 1.08000 * 120.04779 * 179.67182 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6240 1.9750 -0.8553 5 6 3.5444 1.4434 -0.0908 6 1 4.1325 1.8940 0.6949 7 6 4.1697 0.8690 -1.1772 8 7 3.4535 0.3199 -2.1338 9 14 6.0343 0.8707 -1.2901 10 1 6.6014 0.1456 -0.1249 11 1 6.4548 0.1964 -2.5445 12 1 6.5290 2.2709 -1.2903 13 7 1.6252 2.1070 1.2380 14 16 1.2357 3.7166 1.2233 15 8 2.2632 4.3714 0.4918 16 8 0.8938 4.0589 2.5593 17 6 -0.2381 3.8879 0.2729 18 6 -1.4023 4.2218 0.8806 19 6 -2.5864 4.3718 0.1586 20 6 -2.6297 4.1781 -1.1819 21 6 -1.4491 3.8266 -1.8835 22 7 -1.2399 3.5937 -3.1693 23 16 0.2590 3.2445 -3.3946 24 7 0.7878 3.3464 -1.9354 25 6 -0.2082 3.6741 -1.1282 26 1 -0.3633 0.5838 0.8457 27 1 -0.3633 0.4406 -0.9284 28 1 -0.3634 -1.0243 0.0826 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8934 -0.0838 -2.8982 32 1 1.5787 1.6044 2.0662 33 1 -1.4127 4.3806 1.9488 34 1 -3.4916 4.6437 0.6812 35 1 -3.5612 4.2958 -1.7156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:14 Heat of formation + Delta-G solvation = -14.555679 kcal Electronic energy + Delta-G solvation = -24564.369056 eV Core-core repulsion = 21008.893783 eV Total energy + Delta-G solvation = -3555.475274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94386 -38.32038 -37.61030 -37.40500 -36.76083 -34.99386 -34.05716 -32.24165 -31.52064 -28.63309 -28.44035 -24.84165 -23.74863 -23.66695 -21.91040 -20.85095 -20.04098 -18.78378 -18.71673 -18.34931 -17.74289 -17.23614 -16.77175 -16.72078 -16.27058 -15.90953 -15.35580 -14.83749 -14.67834 -13.88010 -13.65143 -13.45125 -13.36863 -13.19957 -13.05539 -13.03033 -12.98099 -12.92287 -12.73379 -12.68133 -12.59123 -12.44356 -12.09998 -11.89884 -11.70575 -11.53742 -11.39473 -11.13930 -10.32011 -10.01064 -9.79901 -9.73069 -8.02181 -6.09908 -1.32186 -0.41390 0.31709 0.44720 0.47903 0.74106 1.40815 1.43210 1.50145 2.14738 2.41464 2.49773 2.82643 3.10043 3.25259 3.56411 3.84570 3.94381 4.03795 4.19460 4.47720 4.54152 4.56284 4.72799 4.74694 4.96397 5.05611 5.14782 5.18727 5.24543 5.30765 5.42743 5.72921 5.77733 5.88824 6.11675 6.39244 6.54710 6.92496 7.53870 9.00443 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.006644 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.739312 B = 4213.177036 C = 5111.530133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.257 3.743 4 H 0.084 0.916 5 C -0.532 4.532 6 H 0.039 0.961 7 C 0.027 3.973 8 N -0.905 5.905 9 Si 0.937 3.063 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.287 1.287 13 N -1.100 6.100 14 S 2.699 3.301 15 O -0.985 6.985 16 O -0.988 6.988 17 C -0.655 4.655 18 C 0.046 3.954 19 C -0.113 4.113 20 C -0.003 4.003 21 C 0.046 3.954 22 N -0.599 5.599 23 S 0.839 5.161 24 N -0.609 5.609 25 C 0.117 3.883 26 H 0.057 0.943 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.412 0.588 33 H 0.179 0.821 34 H 0.203 0.797 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.467 5.033 1.250 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C 0.151 3.849 4 H 0.101 0.899 5 C -0.572 4.572 6 H 0.058 0.942 7 C -0.173 4.173 8 N -0.545 5.545 9 Si 0.764 3.236 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.213 1.213 13 N -0.860 5.860 14 S 2.790 3.210 15 O -0.975 6.975 16 O -0.978 6.978 17 C -0.750 4.750 18 C 0.020 3.980 19 C -0.138 4.138 20 C -0.028 4.028 21 C -0.114 4.114 22 N -0.450 5.450 23 S 0.887 5.113 24 N -0.459 5.459 25 C -0.042 4.042 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.246 0.754 33 H 0.197 0.803 34 H 0.220 0.780 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.806 5.182 -0.711 15.703 hybrid contribution 0.409 -0.254 1.100 1.201 sum -14.397 4.928 0.390 15.222 Atomic orbital electron populations 1.21685 0.96552 1.00937 0.99963 1.21739 0.94075 0.98657 1.01833 1.19017 0.92953 0.91181 0.81731 0.89887 1.21753 0.93467 1.36216 1.05731 0.94239 1.25353 1.01174 0.95301 0.95462 1.69897 1.35731 1.38977 1.09887 0.85953 0.82394 0.77626 0.77632 1.19858 1.20121 1.21342 1.55346 1.82842 1.29269 1.18548 1.01316 0.74110 0.73089 0.72499 1.93559 1.55635 1.74173 1.74155 1.93488 1.85475 1.83415 1.35444 1.30004 1.21504 1.21487 1.01973 1.21364 0.89908 0.84255 1.02469 1.21436 0.99352 0.99819 0.93186 1.21116 0.94656 0.92748 0.94285 1.21781 0.97574 1.05132 0.86924 1.72221 1.25887 1.25105 1.21816 1.78607 0.88613 1.37111 1.06928 1.72391 1.36226 1.25848 1.11432 1.20606 0.88181 1.00214 0.95240 0.92378 0.95755 0.92357 0.90516 0.94142 0.92869 0.75368 0.80341 0.78033 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.85 71.98 0.71 -4.14 16 2 C -0.12 -5.52 5.36 30.60 0.16 -5.36 16 3 C 0.26 12.53 2.15 44.25 0.10 12.63 16 4 H 0.08 4.18 4.06 -2.39 -0.01 4.17 16 5 C -0.53 -30.02 8.84 25.60 0.23 -29.79 16 6 H 0.04 2.31 7.81 -2.91 -0.02 2.29 16 7 C 0.03 1.48 5.30 84.66 0.45 1.93 16 8 N -0.91 -49.74 11.30 21.45 0.24 -49.50 16 9 Si 0.94 45.08 29.54 68.60 2.03 47.11 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 13 N -1.10 -46.00 4.78 -172.51 -0.82 -46.83 16 14 S 2.70 109.61 5.61 -56.49 -0.32 109.30 16 15 O -0.99 -50.01 17.41 -128.00 -2.23 -52.24 16 16 O -0.99 -37.90 16.91 -128.00 -2.16 -40.06 16 17 C -0.65 -21.87 5.94 22.51 0.13 -21.73 16 18 C 0.05 1.03 9.43 21.94 0.21 1.24 16 19 C -0.11 -1.67 9.89 21.94 0.22 -1.45 16 20 C 0.00 -0.06 10.09 22.51 0.23 0.17 16 21 C 0.05 1.36 7.16 41.97 0.30 1.66 16 22 N -0.60 -18.23 11.44 -72.81 -0.83 -19.06 16 23 S 0.84 27.66 23.60 -56.49 -1.33 26.32 16 24 N -0.61 -25.48 8.22 -72.85 -0.60 -26.08 16 25 C 0.12 4.28 6.41 41.97 0.27 4.55 16 26 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 27 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 3.89 5.98 -2.39 -0.01 3.88 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.41 14.91 8.83 -96.75 -0.85 14.06 16 33 H 0.18 3.06 7.23 -2.91 -0.02 3.04 16 34 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 35 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -76.80 320.89 -2.73 -79.53 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.30 Total: 11.83 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 3.00 Total: -40.30 kcal Atomic # 7 Polarization: -139.46 SS G_CDS: -2.01 Total: -141.47 kcal Atomic # 8 Polarization: -87.91 SS G_CDS: -4.39 Total: -92.31 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 137.27 SS G_CDS: -1.65 Total: 135.62 kcal Total: -76.80 -2.73 -79.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.972 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds