Wall clock time and date at job start Tue Mar 31 2020 14:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.43505 * 34.99286 * 14 13 11 16 16 C 1.53064 * 109.43696 * 154.90843 * 14 13 11 17 17 C 1.53390 * 108.31241 * 168.30946 * 16 14 13 18 18 O 1.42831 * 108.33262 * 295.23610 * 17 16 14 19 19 C 1.35871 * 117.85424 * 49.19752 * 18 17 16 20 20 C 1.39253 * 118.48990 * 163.03667 * 19 18 17 21 21 Cl 1.73604 * 119.90443 * 359.60594 * 20 19 18 22 22 C 1.38058 * 120.19402 * 179.60953 * 20 19 18 23 23 C 1.38293 * 119.94115 * 359.97438 * 22 20 19 24 24 C 1.38094 * 119.99353 * 0.06283 * 23 22 20 25 25 C 1.38325 * 121.81788 * 342.76241 * 19 18 17 26 26 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 28 28 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 29 29 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 30 30 H 1.08999 * 109.69594 * 287.96455 * 16 14 13 31 31 H 1.08994 * 109.70103 * 48.56029 * 16 14 13 32 32 H 1.09002 * 109.69450 * 175.53507 * 17 16 14 33 33 H 1.08997 * 109.74710 * 54.96876 * 17 16 14 34 34 H 1.07999 * 120.03116 * 180.02562 * 22 20 19 35 35 H 1.07998 * 120.00607 * 180.08577 * 23 22 20 36 36 H 1.08004 * 119.82669 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.4147 -7.7564 -0.6238 16 6 3.3761 -8.6473 -0.6500 17 6 2.9483 -10.0958 -0.3819 18 8 2.9824 -10.3205 1.0282 19 6 2.3677 -9.4127 1.8308 20 6 2.0747 -9.7767 3.1426 21 17 2.4862 -11.3639 3.7129 22 6 1.4579 -8.8790 3.9910 23 6 1.1301 -7.6142 3.5377 24 6 1.4188 -7.2508 2.2371 25 6 2.0355 -8.1478 1.3803 26 1 -0.4849 0.8401 0.0004 27 1 3.1244 -3.7267 -0.9039 28 1 3.1244 -3.7361 0.8761 29 1 3.8007 -6.1835 -0.0260 30 1 3.4338 -8.4751 -1.7248 31 1 4.3486 -8.4606 -0.1947 32 1 3.6357 -10.7799 -0.8794 33 1 1.9367 -10.2561 -0.7548 34 1 1.2323 -9.1639 5.0080 35 1 0.6489 -6.9107 4.2008 36 1 1.1612 -6.2625 1.8857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056251972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:06 Heat of formation + Delta-G solvation = -55.262974 kcal Electronic energy + Delta-G solvation = -22568.035006 eV Core-core repulsion = 18976.458074 eV Total energy + Delta-G solvation = -3591.576932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20302 -39.21355 -37.82674 -36.53177 -35.46326 -32.47702 -32.25472 -30.92896 -30.16466 -29.06802 -25.64646 -25.21996 -24.03770 -22.54479 -20.59053 -20.48548 -18.12830 -17.93114 -17.13495 -16.70832 -16.37175 -16.03771 -15.29895 -15.23847 -14.84469 -14.54367 -14.21826 -14.08955 -13.85745 -13.64719 -13.28514 -12.96770 -12.62084 -12.54547 -12.26373 -11.88243 -11.60962 -11.39080 -11.21275 -11.10333 -11.07502 -10.99681 -10.90823 -10.78332 -9.86865 -9.57972 -9.17186 -9.09812 -8.84090 -8.35312 -8.31031 -6.56239 -6.26554 -3.97709 0.98826 1.13429 2.03360 2.85404 2.89499 2.97227 3.19278 3.23762 3.27581 3.46107 3.66055 4.15588 4.23134 4.33693 4.43372 4.72303 4.75876 4.96241 5.06820 5.08027 5.09034 5.19286 5.21959 5.29912 5.49301 5.53084 5.58539 5.72183 5.79512 5.91775 6.05806 6.22243 6.32373 6.47776 6.51718 7.07208 7.52792 7.55546 8.30453 8.42646 9.19116 10.80808 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.024570 B = 0.002711 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.331375 B =10325.822837 C =10984.041159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.155 4.155 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.729 5.729 14 C 0.193 3.807 15 H 0.104 0.896 16 C -0.167 4.167 17 C 0.066 3.934 18 O -0.306 6.306 19 C 0.146 3.854 20 C -0.073 4.073 21 Cl -0.065 7.065 22 C -0.077 4.077 23 C -0.141 4.141 24 C -0.060 4.060 25 C -0.166 4.166 26 H 0.269 0.731 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.401 0.599 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.899 -21.091 2.630 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.306 4.306 11 C 0.320 3.680 12 O -0.386 6.386 13 N -0.383 5.383 14 C 0.087 3.913 15 H 0.122 0.878 16 C -0.205 4.205 17 C -0.010 4.010 18 O -0.220 6.220 19 C 0.099 3.901 20 C -0.101 4.101 21 Cl -0.036 7.036 22 C -0.096 4.096 23 C -0.159 4.159 24 C -0.078 4.078 25 C -0.168 4.168 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.236 0.764 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.869 -21.614 2.709 22.560 hybrid contribution 2.398 1.433 -0.069 2.794 sum 8.267 -20.181 2.640 21.968 Atomic orbital electron populations 1.70014 1.05949 1.27523 1.46747 1.24994 0.95034 0.99051 0.94466 0.86167 0.79430 0.81534 0.78375 1.20257 1.20723 1.19671 1.22857 0.94904 0.91593 1.59116 0.90906 1.85384 1.04620 0.96344 1.96742 1.23559 1.06822 0.95078 1.05140 1.20405 0.86615 0.86359 0.74607 1.90718 1.15201 1.85464 1.47225 1.46078 1.10186 1.04437 1.77599 1.19563 0.98242 0.81837 0.91619 0.87786 1.22516 0.99715 0.95090 1.03177 1.22990 1.02851 0.96295 0.78859 1.86066 1.71406 1.46451 1.18029 1.18297 0.94133 0.88231 0.89448 1.20286 1.07847 0.88929 0.92993 1.98347 1.92640 1.23967 1.88653 1.20925 0.96720 0.92671 0.99251 1.21107 1.02342 0.96071 0.96428 1.21530 0.93166 1.00419 0.92674 1.20208 1.05384 0.93024 0.98186 0.92136 0.89050 0.89065 0.76417 0.88663 0.89635 0.86743 0.91157 0.84480 0.84650 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.62 13.22 55.49 0.73 -24.88 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.86 9.50 30.94 0.29 -14.56 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 10 C -0.16 -2.93 6.16 36.00 0.22 -2.71 16 11 C 0.53 9.03 6.41 -10.99 -0.07 8.96 16 12 O -0.51 -10.48 13.79 5.56 0.08 -10.40 16 13 N -0.73 -8.90 4.86 -54.86 -0.27 -9.17 16 14 C 0.19 2.18 2.70 -69.01 -0.19 2.00 16 15 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 16 C -0.17 -1.28 5.67 -26.50 -0.15 -1.43 16 17 C 0.07 0.49 7.03 37.36 0.26 0.75 16 18 O -0.31 -3.34 9.65 -19.33 -0.19 -3.52 16 19 C 0.15 1.79 6.47 -39.17 -0.25 1.53 16 20 C -0.07 -0.89 6.34 -39.27 -0.25 -1.14 16 21 Cl -0.06 -0.72 28.40 -51.86 -1.47 -2.20 16 22 C -0.08 -0.86 9.82 -39.63 -0.39 -1.25 16 23 C -0.14 -1.73 10.04 -39.61 -0.40 -2.13 16 24 C -0.06 -0.84 9.07 -39.53 -0.36 -1.20 16 25 C -0.17 -2.11 5.56 -104.44 -0.58 -2.69 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 28 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 29 H 0.40 3.81 8.58 -40.82 -0.35 3.46 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 32 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.15 2.38 4.69 -52.48 -0.25 2.14 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -33.16 333.51 -9.19 -42.35 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -3.91 Total: 2.42 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.95 Total: -11.89 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.47 Total: -34.05 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.11 Total: -13.93 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.47 Total: -2.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.16 -9.19 -42.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056251972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.910 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds