Wall clock time and date at job start Tue Mar 31 2020 14:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.43505 * 34.99286 * 14 13 11 16 16 C 1.53064 * 109.43696 * 154.90843 * 14 13 11 17 17 C 1.53390 * 108.31241 * 168.30946 * 16 14 13 18 18 O 1.42831 * 108.33262 * 295.23610 * 17 16 14 19 19 C 1.35871 * 117.85424 * 49.19752 * 18 17 16 20 20 C 1.39253 * 118.48990 * 163.03667 * 19 18 17 21 21 Cl 1.73604 * 119.90443 * 359.60594 * 20 19 18 22 22 C 1.38058 * 120.19402 * 179.60953 * 20 19 18 23 23 C 1.38293 * 119.94115 * 359.97438 * 22 20 19 24 24 C 1.38094 * 119.99353 * 0.06283 * 23 22 20 25 25 C 1.38325 * 121.81788 * 342.76241 * 19 18 17 26 26 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 28 28 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 29 29 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 30 30 H 1.08999 * 109.69594 * 287.96455 * 16 14 13 31 31 H 1.08994 * 109.70103 * 48.56029 * 16 14 13 32 32 H 1.09002 * 109.69450 * 175.53507 * 17 16 14 33 33 H 1.08997 * 109.74710 * 54.96876 * 17 16 14 34 34 H 1.07999 * 120.03116 * 180.02562 * 22 20 19 35 35 H 1.07998 * 120.00607 * 180.08577 * 23 22 20 36 36 H 1.08004 * 119.82669 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.4147 -7.7564 -0.6238 16 6 3.3761 -8.6473 -0.6500 17 6 2.9483 -10.0958 -0.3819 18 8 2.9824 -10.3205 1.0282 19 6 2.3677 -9.4127 1.8308 20 6 2.0747 -9.7767 3.1426 21 17 2.4862 -11.3639 3.7129 22 6 1.4579 -8.8790 3.9910 23 6 1.1301 -7.6142 3.5377 24 6 1.4188 -7.2508 2.2371 25 6 2.0355 -8.1478 1.3803 26 1 -0.4849 0.8401 0.0004 27 1 3.1244 -3.7267 -0.9039 28 1 3.1244 -3.7361 0.8761 29 1 3.8007 -6.1835 -0.0260 30 1 3.4338 -8.4751 -1.7248 31 1 4.3486 -8.4606 -0.1947 32 1 3.6357 -10.7799 -0.8794 33 1 1.9367 -10.2561 -0.7548 34 1 1.2323 -9.1639 5.0080 35 1 0.6489 -6.9107 4.2008 36 1 1.1612 -6.2625 1.8857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056251972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:06 Heat of formation + Delta-G solvation = -76.831617 kcal Electronic energy + Delta-G solvation = -22568.970292 eV Core-core repulsion = 18976.458074 eV Total energy + Delta-G solvation = -3592.512219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.12371 -40.45230 -38.68662 -37.46084 -36.51963 -34.58246 -33.33118 -31.78640 -31.11279 -30.43744 -27.68506 -26.18902 -24.87026 -23.51849 -21.87294 -21.32398 -19.84330 -19.00644 -18.13746 -17.76069 -17.52511 -17.12228 -16.87530 -16.50184 -16.17592 -15.82965 -15.43500 -15.15959 -14.82625 -14.74596 -14.56264 -14.40826 -13.74033 -13.55230 -13.35446 -13.16411 -12.90837 -12.81682 -12.64042 -12.49257 -12.31650 -11.96337 -11.84303 -11.76964 -11.66873 -11.14182 -10.98792 -10.29914 -10.27385 -9.80097 -9.26131 -8.65616 -8.34857 -6.12084 0.02627 0.19335 1.11670 1.26745 1.42239 1.46670 1.54615 1.56878 2.10076 2.24687 2.27873 2.58782 2.99596 3.30375 3.44672 3.50653 3.68968 3.84937 4.01668 4.08476 4.18158 4.27659 4.29454 4.32592 4.48034 4.51048 4.59520 4.64976 4.85678 4.95351 5.00474 5.23035 5.30752 5.42286 5.47256 5.57657 6.19838 6.24540 6.43013 7.07037 7.17439 8.74101 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.024570 B = 0.002711 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.331375 B =10325.822837 C =10984.041159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.143 6.143 10 C -0.132 4.132 11 C 0.539 3.461 12 O -0.553 6.553 13 N -0.705 5.705 14 C 0.191 3.809 15 H 0.087 0.913 16 C -0.156 4.156 17 C 0.059 3.941 18 O -0.313 6.313 19 C 0.146 3.854 20 C -0.084 4.084 21 Cl -0.056 7.056 22 C -0.071 4.071 23 C -0.148 4.148 24 C -0.083 4.083 25 C -0.173 4.173 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.418 0.582 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.149 0.851 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.504 -22.256 2.444 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.084 5.916 10 C -0.283 4.283 11 C 0.325 3.675 12 O -0.431 6.431 13 N -0.358 5.358 14 C 0.086 3.914 15 H 0.105 0.895 16 C -0.194 4.194 17 C -0.015 4.015 18 O -0.227 6.227 19 C 0.099 3.901 20 C -0.112 4.112 21 Cl -0.027 7.027 22 C -0.089 4.089 23 C -0.167 4.167 24 C -0.101 4.101 25 C -0.175 4.175 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.256 0.744 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.166 0.834 33 H 0.091 0.909 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.526 -22.817 2.516 24.488 hybrid contribution 1.620 1.615 -0.002 2.287 sum 10.146 -21.202 2.514 23.639 Atomic orbital electron populations 1.70177 1.07911 1.28579 1.48039 1.26095 0.95940 1.03237 0.93796 0.84985 0.78232 0.76197 0.78774 1.19335 1.20392 1.18246 1.23205 0.95337 0.92124 1.58775 0.89992 1.85535 1.10101 0.98960 1.97035 1.23390 1.03786 0.94316 1.06828 1.20040 0.86341 0.86520 0.74601 1.90711 1.17033 1.85852 1.49457 1.45783 1.10457 1.04021 1.75548 1.19717 0.99050 0.81522 0.91141 0.89542 1.22511 0.98553 0.93996 1.04298 1.23334 1.04130 0.96848 0.77236 1.86068 1.70921 1.46091 1.19597 1.18332 0.93773 0.88125 0.89856 1.20512 1.07889 0.89490 0.93275 1.98347 1.92560 1.23284 1.88517 1.21150 0.95710 0.91856 1.00224 1.21246 1.02470 0.96927 0.96013 1.21434 0.94903 0.99795 0.93986 1.20255 1.05507 0.93244 0.98514 0.92015 0.87046 0.87440 0.74446 0.86358 0.88582 0.83373 0.90886 0.82116 0.83771 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.13 13.22 21.65 0.29 -54.84 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.55 -30.52 9.50 67.96 0.65 -29.87 16 8 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 9 S -0.14 -7.69 20.57 -56.49 -1.16 -8.85 16 10 C -0.13 -4.94 6.16 71.23 0.44 -4.50 16 11 C 0.54 18.31 6.41 87.66 0.56 18.88 16 12 O -0.55 -23.56 13.79 -3.02 -0.04 -23.60 16 13 N -0.70 -16.38 4.86 -445.88 -2.17 -18.54 16 14 C 0.19 4.11 2.70 44.29 0.12 4.23 16 15 H 0.09 2.21 7.58 -2.38 -0.02 2.19 16 16 C -0.16 -1.92 5.67 30.75 0.17 -1.74 16 17 C 0.06 0.71 7.03 72.11 0.51 1.21 16 18 O -0.31 -6.10 9.65 -92.10 -0.89 -6.99 16 19 C 0.15 3.39 6.47 22.53 0.15 3.54 16 20 C -0.08 -1.93 6.34 22.47 0.14 -1.78 16 21 Cl -0.06 -1.15 28.40 -2.72 -0.08 -1.22 16 22 C -0.07 -1.51 9.82 22.24 0.22 -1.29 16 23 C -0.15 -3.64 10.04 22.25 0.22 -3.42 16 24 C -0.08 -2.38 9.07 22.31 0.20 -2.18 16 25 C -0.17 -4.32 5.56 -19.75 -0.11 -4.42 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 28 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.42 6.94 8.58 -92.71 -0.80 6.15 16 30 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.04 8.11 -2.39 -0.02 1.02 16 32 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.12 4.06 4.69 -2.91 -0.01 4.05 16 Total: -1.00 -74.73 333.51 2.05 -72.68 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.34 Total: 16.51 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 3.74 Total: -20.10 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.88 Total: -73.39 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.93 Total: -30.59 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -1.16 Total: -8.85 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.22 kcal Total: -74.73 2.05 -72.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056251972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.149 kcal (2) G-P(sol) polarization free energy of solvation -74.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds