Wall clock time and date at job start Tue Mar 31 2020 14:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47065 * 2 1 4 4 C 1.50695 * 109.47369 * 120.00642 * 2 1 3 5 5 H 1.07998 * 120.00265 * 120.00237 * 4 2 1 6 6 C 1.37876 * 119.99950 * 299.99498 * 4 2 1 7 7 N 1.31510 * 120.00410 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99881 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.47046 * 89.99928 * 8 6 4 10 10 H 1.48500 * 109.47154 * 209.99287 * 8 6 4 11 11 H 1.48492 * 109.47225 * 329.99508 * 8 6 4 12 12 N 1.46504 * 109.46941 * 240.00866 * 2 1 3 13 13 C 1.46499 * 119.99636 * 299.99273 * 12 2 1 14 14 S 1.65595 * 120.00482 * 119.99800 * 12 2 1 15 15 O 1.42103 * 106.39973 * 336.45995 * 14 12 2 16 16 O 1.42094 * 106.40468 * 203.53607 * 14 12 2 17 17 C 1.76200 * 107.21749 * 89.99616 * 14 12 2 18 18 C 1.35510 * 120.04873 * 114.98442 * 17 14 12 19 19 C 1.39491 * 121.58014 * 179.71087 * 18 17 14 20 20 C 1.35508 * 121.58511 * 0.62315 * 19 18 17 21 21 C 1.41763 * 119.89801 * 359.40001 * 20 19 18 22 22 N 1.32331 * 131.00774 * 180.27318 * 21 20 19 23 23 S 1.55542 * 109.42052 * 180.02562 * 22 21 20 24 24 N 1.55537 * 100.20494 * 0.02562 * 23 22 21 25 25 C 1.32334 * 109.42132 * 0.02562 * 24 23 22 26 26 H 1.08992 * 109.47798 * 59.99404 * 1 2 3 27 27 H 1.09005 * 109.47065 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47126 * 299.99261 * 1 2 3 29 29 H 0.96997 * 120.00628 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47522 * 270.00511 * 13 12 2 31 31 H 1.09007 * 109.47116 * 30.00416 * 13 12 2 32 32 H 1.09005 * 109.46948 * 150.00089 * 13 12 2 33 33 H 1.08002 * 119.20647 * 0.02562 * 18 17 14 34 34 H 1.08000 * 119.21346 * 180.30759 * 19 18 17 35 35 H 1.08002 * 120.05502 * 179.68267 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 2.1381 -0.8592 3.5564 8 14 0.6249 1.2789 2.6542 9 1 -0.8028 0.8725 2.6999 10 1 0.9760 1.9948 3.9070 11 1 0.8471 2.1764 1.4923 12 7 2.0182 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4282 14 16 2.9702 0.1144 -2.2863 15 8 2.6902 1.4975 -2.1192 16 8 2.8226 -0.5643 -3.5260 17 6 4.6443 -0.1180 -1.7882 18 6 5.4976 -0.8122 -2.5796 19 6 6.8306 -1.0103 -2.2194 20 6 7.3305 -0.5283 -1.0558 21 6 6.4946 0.2076 -0.1786 22 7 6.7474 0.7740 0.9904 23 16 5.4562 1.4579 1.5237 24 7 4.4692 1.1210 0.3697 25 6 5.0999 0.4190 -0.5579 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.9036 -0.5281 4.4374 30 1 2.4157 -2.7376 -0.9719 31 1 0.6903 -2.3001 -0.9848 32 1 1.6237 -2.2850 -2.5004 33 1 5.1382 -1.2176 -3.5139 34 1 7.4786 -1.5654 -2.8815 35 1 8.3653 -0.7005 -0.7991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:09 Heat of formation + Delta-G solvation = 0.848416 kcal Electronic energy + Delta-G solvation = -24700.860178 eV Core-core repulsion = 21146.052876 eV Total energy + Delta-G solvation = -3554.807302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88854 -38.44133 -38.04136 -37.43150 -36.90036 -34.95966 -34.47481 -31.77065 -31.51820 -28.62297 -27.33604 -26.87397 -23.71745 -23.66777 -22.59142 -20.74885 -19.69089 -19.00445 -18.65407 -18.33951 -17.98190 -17.21636 -16.94534 -16.76722 -16.26098 -15.95855 -15.37386 -15.02078 -14.52749 -14.15479 -13.88079 -13.82214 -13.51057 -13.46122 -13.23636 -13.11031 -13.05014 -13.04014 -12.95043 -12.75476 -12.65971 -12.50648 -12.13177 -12.02266 -11.85006 -11.49210 -11.40444 -11.23626 -10.69987 -9.88401 -9.77477 -9.67320 -8.24261 -6.23075 -1.30697 -0.52313 0.31554 0.43934 0.52440 0.76169 1.27406 1.36832 1.46088 1.94783 2.32893 2.33754 2.71711 3.10357 3.11753 3.42946 3.82309 3.90395 4.04029 4.07025 4.15524 4.50299 4.54281 4.65891 4.71468 4.74778 4.80242 4.93507 5.03540 5.12888 5.14250 5.18806 5.24540 5.53402 5.63814 5.78124 5.89758 6.39545 6.75258 7.39183 8.91389 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.008249 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.920321 B = 3393.738876 C = 4833.044947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.241 3.759 3 H 0.052 0.948 4 C -0.485 4.485 5 H 0.044 0.956 6 C 0.036 3.964 7 N -0.938 5.938 8 Si 0.905 3.095 9 H -0.265 1.265 10 H -0.293 1.293 11 H -0.258 1.258 12 N -0.980 5.980 13 C 0.092 3.908 14 S 2.700 3.300 15 O -0.986 6.986 16 O -0.970 6.970 17 C -0.656 4.656 18 C 0.042 3.958 19 C -0.114 4.114 20 C -0.008 4.008 21 C 0.041 3.959 22 N -0.604 5.604 23 S 0.832 5.168 24 N -0.600 5.600 25 C 0.121 3.879 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.182 0.818 34 H 0.203 0.797 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -0.776 -11.065 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.070 0.930 4 C -0.524 4.524 5 H 0.063 0.937 6 C -0.163 4.163 7 N -0.579 5.579 8 Si 0.734 3.266 9 H -0.191 1.191 10 H -0.220 1.220 11 H -0.183 1.183 12 N -0.819 5.819 13 C -0.053 4.053 14 S 2.792 3.208 15 O -0.976 6.976 16 O -0.960 6.960 17 C -0.751 4.751 18 C 0.016 3.984 19 C -0.139 4.139 20 C -0.032 4.032 21 C -0.119 4.119 22 N -0.456 5.456 23 S 0.880 5.120 24 N -0.449 5.449 25 C -0.038 4.038 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.200 0.800 34 H 0.220 0.780 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.603 0.904 -9.603 12.925 hybrid contribution 0.006 -0.409 0.046 0.411 sum 8.609 0.496 -9.557 12.872 Atomic orbital electron populations 1.22418 0.97642 1.02296 0.99721 1.18917 0.91478 0.93252 0.82817 0.93025 1.21091 1.30120 1.11814 0.89400 0.93743 1.25298 0.96988 0.98362 0.95602 1.69975 1.47728 1.41937 0.98288 0.86520 0.80443 0.82192 0.77482 1.19117 1.22015 1.18267 1.57038 1.64015 1.22759 1.38054 1.21544 1.02227 0.79652 1.01904 1.01411 0.73688 0.72983 0.72711 1.93516 1.84357 1.33225 1.86506 1.93494 1.86356 1.75581 1.40618 1.30117 1.26363 1.16060 1.02557 1.21372 0.93559 0.86345 0.97161 1.21434 0.94994 1.00425 0.97020 1.21101 0.99904 0.91311 0.90917 1.21847 0.94431 1.03153 0.92448 1.72197 1.35135 1.21801 1.16426 1.78408 0.81834 1.32178 1.19585 1.72228 1.38486 1.23215 1.10998 1.20547 0.91459 0.97317 0.94510 0.92670 0.91004 0.94194 0.92662 0.93508 0.90044 0.88956 0.80045 0.78026 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.86 8.65 71.98 0.62 -6.24 16 2 C 0.24 11.30 1.88 44.24 0.08 11.38 16 3 H 0.05 2.66 5.40 -2.38 -0.01 2.65 16 4 C -0.48 -25.60 8.53 25.60 0.22 -25.38 16 5 H 0.04 2.59 7.89 -2.91 -0.02 2.57 16 6 C 0.04 1.96 5.45 84.66 0.46 2.42 16 7 N -0.94 -54.72 13.96 21.45 0.30 -54.42 16 8 Si 0.91 43.67 24.37 68.60 1.67 45.34 16 9 H -0.27 -12.17 6.87 99.48 0.68 -11.48 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 11 H -0.26 -12.38 6.53 99.48 0.65 -11.73 16 12 N -0.98 -39.58 3.06 -520.44 -1.59 -41.17 16 13 C 0.09 3.05 9.90 127.77 1.26 4.31 16 14 S 2.70 103.67 5.61 -56.49 -0.32 103.35 16 15 O -0.99 -44.75 16.51 -128.00 -2.11 -46.87 16 16 O -0.97 -34.31 15.51 -128.00 -1.99 -36.30 16 17 C -0.66 -22.53 5.93 22.51 0.13 -22.39 16 18 C 0.04 0.98 9.43 21.94 0.21 1.19 16 19 C -0.11 -1.93 9.89 21.94 0.22 -1.71 16 20 C -0.01 -0.16 10.09 22.51 0.23 0.06 16 21 C 0.04 1.37 7.16 41.97 0.30 1.67 16 22 N -0.60 -20.88 11.44 -72.83 -0.83 -21.71 16 23 S 0.83 30.28 23.60 -56.49 -1.33 28.95 16 24 N -0.60 -25.91 10.06 -72.84 -0.73 -26.65 16 25 C 0.12 4.72 6.86 41.97 0.29 5.01 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 2.80 6.66 -2.38 -0.02 2.78 16 28 H 0.04 1.75 3.27 -2.38 -0.01 1.74 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.63 6.43 -2.38 -0.02 2.61 16 32 H 0.09 2.56 7.02 -2.38 -0.02 2.54 16 33 H 0.18 3.16 7.22 -2.91 -0.02 3.14 16 34 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -74.57 313.01 -1.84 -76.41 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.07 Total: 2.74 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 4.02 Total: -29.68 kcal Atomic # 7 Polarization: -141.09 SS G_CDS: -2.86 Total: -143.95 kcal Atomic # 8 Polarization: -79.07 SS G_CDS: -4.10 Total: -83.16 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.67 Total: 45.34 kcal Atomic # 16 Polarization: 133.95 SS G_CDS: -1.65 Total: 132.30 kcal Total: -74.57 -1.84 -76.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.261 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds