Wall clock time and date at job start Tue Mar 31 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46956 * 2 1 4 4 C 1.50702 * 109.46794 * 240.00341 * 2 1 3 5 5 H 1.08002 * 119.99469 * 239.99729 * 4 2 1 6 6 C 1.37870 * 119.99989 * 59.99671 * 4 2 1 7 7 N 1.31511 * 120.00781 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99604 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47145 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46882 * 119.99985 * 8 6 4 11 11 H 1.48494 * 109.47200 * 240.00101 * 8 6 4 12 12 N 1.46499 * 109.47224 * 119.99774 * 2 1 3 13 13 C 1.46504 * 119.99636 * 60.00424 * 12 2 1 14 14 S 1.65595 * 119.99882 * 239.99897 * 12 2 1 15 15 O 1.42103 * 106.39973 * 156.46522 * 14 12 2 16 16 O 1.42094 * 106.40468 * 23.54134 * 14 12 2 17 17 C 1.76200 * 107.21749 * 270.00143 * 14 12 2 18 18 C 1.35510 * 120.04873 * 114.98442 * 17 14 12 19 19 C 1.39491 * 121.58014 * 179.71087 * 18 17 14 20 20 C 1.35508 * 121.58511 * 0.62315 * 19 18 17 21 21 C 1.41763 * 119.89801 * 359.40001 * 20 19 18 22 22 N 1.32331 * 131.00774 * 180.27318 * 21 20 19 23 23 S 1.55542 * 109.42052 * 180.02562 * 22 21 20 24 24 N 1.55537 * 100.20494 * 0.02562 * 23 22 21 25 25 C 1.32334 * 109.42132 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.46973 * 299.99676 * 1 2 3 27 27 H 1.08997 * 109.47605 * 59.99802 * 1 2 3 28 28 H 1.09009 * 109.47276 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00520 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46906 * 269.99250 * 13 12 2 31 31 H 1.08994 * 109.47122 * 29.99811 * 13 12 2 32 32 H 1.09006 * 109.46842 * 149.99791 * 13 12 2 33 33 H 1.08002 * 119.20647 * 0.02562 * 18 17 14 34 34 H 1.08000 * 119.21346 * 180.30759 * 19 18 17 35 35 H 1.08002 * 120.05502 * 179.68267 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6038 10 1 1.1675 -1.5866 -4.8165 11 1 3.1470 -0.1857 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 16 2.9704 0.1143 2.2861 15 8 2.8229 -0.5645 3.5258 16 8 2.6904 1.4973 2.1192 17 6 4.6444 -0.1181 1.7879 18 6 5.3851 0.9418 1.3824 19 6 6.7147 0.7953 0.9869 20 6 7.3233 -0.4154 0.9781 21 6 6.6088 -1.5685 1.3898 22 7 6.9793 -2.8362 1.4722 23 16 5.7870 -3.6910 1.9888 24 7 4.7073 -2.5842 2.1578 25 6 5.2178 -1.4144 1.8084 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 0.7085 1.1613 -3.4844 30 1 0.7377 -2.1444 1.9994 31 1 1.5296 -2.5968 0.4708 32 1 2.4630 -2.5819 1.9863 33 1 4.9366 1.9242 1.3699 34 1 7.2711 1.6670 0.6755 35 1 8.3526 -0.5011 0.6624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094940.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:13 Heat of formation + Delta-G solvation = 16.324674 kcal Electronic energy + Delta-G solvation = -24318.038728 eV Core-core repulsion = 20763.902526 eV Total energy + Delta-G solvation = -3554.136201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88629 -36.86189 -36.33651 -36.08782 -35.24073 -33.95415 -32.59517 -30.47714 -29.04923 -27.59059 -25.44315 -25.18254 -22.69524 -22.58672 -20.70577 -19.69260 -18.28512 -17.54215 -17.12171 -16.52422 -16.43087 -15.82150 -15.69885 -15.23090 -15.01126 -14.46079 -13.46683 -13.19395 -12.88943 -12.71545 -12.39883 -12.17363 -12.00372 -11.94309 -11.78892 -11.63747 -11.48996 -11.43216 -11.32998 -11.21070 -11.05345 -10.89221 -10.67835 -10.40466 -10.26953 -10.19993 -10.04588 -9.27090 -8.77836 -8.74960 -8.50324 -7.91520 -6.11568 -4.19446 -0.34097 1.02619 1.34802 1.38023 1.52815 1.73157 3.20556 3.24516 3.29341 3.31765 3.65806 4.16831 4.27834 4.33423 4.69454 4.74124 4.99202 5.02470 5.18882 5.23665 5.49880 5.74239 5.85700 6.04174 6.09121 6.12738 6.30511 6.49950 6.72370 6.74702 6.89433 6.90962 7.11748 7.49134 7.62035 7.77458 8.04228 8.24962 8.83601 9.46690 10.93467 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.006308 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.406945 B = 4437.664252 C = 5109.089561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.265 3.735 3 H 0.061 0.939 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.972 5.972 13 C 0.099 3.901 14 S 2.688 3.312 15 O -0.962 6.962 16 O -0.960 6.960 17 C -0.619 4.619 18 C 0.032 3.968 19 C -0.118 4.118 20 C -0.017 4.017 21 C 0.063 3.937 22 N -0.590 5.590 23 S 0.802 5.198 24 N -0.589 5.589 25 C 0.150 3.850 26 H 0.014 0.986 27 H 0.093 0.907 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 -4.553 7.177 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.079 0.921 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.812 5.812 13 C -0.047 4.047 14 S 2.775 3.225 15 O -0.952 6.952 16 O -0.950 6.950 17 C -0.709 4.709 18 C 0.007 3.993 19 C -0.143 4.143 20 C -0.042 4.042 21 C -0.097 4.097 22 N -0.442 5.442 23 S 0.849 5.151 24 N -0.439 5.439 25 C -0.009 4.009 26 H 0.033 0.967 27 H 0.112 0.888 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.335 -6.293 8.164 14.597 hybrid contribution 1.042 0.949 -1.891 2.359 sum 11.377 -5.344 6.273 14.048 Atomic orbital electron populations 1.22041 0.97608 0.99778 1.00842 1.18804 0.92063 0.92818 0.80110 0.92131 1.21399 1.31692 1.13021 0.90234 0.92164 1.24884 0.94962 0.94974 0.98836 1.69878 1.36228 1.22584 1.23688 0.86538 0.78694 0.79636 0.83092 1.20043 1.20851 1.20888 1.57322 1.62237 1.21854 1.39806 1.21396 0.99787 0.81610 1.01916 1.02176 0.73081 0.73534 0.73717 1.93534 1.85461 1.75344 1.40859 1.93551 1.83387 1.31485 1.86605 1.30605 1.27569 0.94683 1.18018 1.20886 0.93325 0.98723 0.86412 1.20945 0.95106 0.97817 1.00477 1.20493 0.99514 0.88682 0.95557 1.21264 0.93647 0.90657 1.04120 1.72155 1.36504 1.09676 1.25893 1.78439 0.83880 1.17825 1.34952 1.72218 1.36942 1.06700 1.27998 1.20183 0.91506 0.91052 0.98165 0.96701 0.88823 0.94819 0.92658 0.93939 0.90684 0.91015 0.82365 0.83438 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.26 6.50 2.62 -69.08 -0.18 6.31 16 3 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 4 C -0.52 -13.58 7.99 -34.44 -0.28 -13.86 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 8 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.97 -21.06 3.06 -115.85 -0.35 -21.41 16 13 C 0.10 1.92 9.28 59.85 0.56 2.48 16 14 S 2.69 55.30 5.56 -107.50 -0.60 54.70 16 15 O -0.96 -20.76 17.02 -57.17 -0.97 -21.74 16 16 O -0.96 -21.09 15.47 -57.17 -0.88 -21.97 16 17 C -0.62 -11.21 5.93 -39.21 -0.23 -11.44 16 18 C 0.03 0.49 9.43 -40.09 -0.38 0.11 16 19 C -0.12 -1.39 9.89 -40.09 -0.40 -1.79 16 20 C -0.02 -0.22 10.09 -39.21 -0.40 -0.61 16 21 C 0.06 0.97 7.16 -83.17 -0.60 0.38 16 22 N -0.59 -8.50 11.44 25.63 0.29 -8.21 16 23 S 0.80 10.04 23.60 -107.50 -2.54 7.50 16 24 N -0.59 -9.89 9.33 25.63 0.24 -9.65 16 25 C 0.15 2.66 6.86 -83.17 -0.57 2.09 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.03 0.75 7.67 -51.92 -0.40 0.35 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.46 7.02 -51.93 -0.36 1.10 16 32 H 0.07 1.31 5.62 -51.93 -0.29 1.02 16 33 H 0.16 2.14 7.22 -52.49 -0.38 1.77 16 34 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -32.75 319.74 -9.94 -42.69 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -3.32 Total: -1.02 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.23 Total: -17.76 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.80 Total: -62.73 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.86 Total: -43.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 65.34 SS G_CDS: -3.13 Total: 62.20 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.75 -9.94 -42.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094940.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.013 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds