Wall clock time and date at job start Tue Mar 31 2020 14:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46956 * 2 1 4 4 C 1.50702 * 109.46794 * 240.00341 * 2 1 3 5 5 H 1.08002 * 119.99469 * 239.99729 * 4 2 1 6 6 C 1.37870 * 119.99989 * 59.99671 * 4 2 1 7 7 N 1.31511 * 120.00781 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99604 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47145 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46882 * 119.99985 * 8 6 4 11 11 H 1.48494 * 109.47200 * 240.00101 * 8 6 4 12 12 N 1.46499 * 109.47224 * 119.99774 * 2 1 3 13 13 C 1.46504 * 119.99636 * 60.00424 * 12 2 1 14 14 S 1.65595 * 119.99882 * 239.99897 * 12 2 1 15 15 O 1.42103 * 106.39973 * 156.46522 * 14 12 2 16 16 O 1.42094 * 106.40468 * 23.54134 * 14 12 2 17 17 C 1.76200 * 107.21749 * 270.00143 * 14 12 2 18 18 C 1.35510 * 120.04873 * 114.98442 * 17 14 12 19 19 C 1.39491 * 121.58014 * 179.71087 * 18 17 14 20 20 C 1.35508 * 121.58511 * 0.62315 * 19 18 17 21 21 C 1.41763 * 119.89801 * 359.40001 * 20 19 18 22 22 N 1.32331 * 131.00774 * 180.27318 * 21 20 19 23 23 S 1.55542 * 109.42052 * 180.02562 * 22 21 20 24 24 N 1.55537 * 100.20494 * 0.02562 * 23 22 21 25 25 C 1.32334 * 109.42132 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.46973 * 299.99676 * 1 2 3 27 27 H 1.08997 * 109.47605 * 59.99802 * 1 2 3 28 28 H 1.09009 * 109.47276 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00520 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46906 * 269.99250 * 13 12 2 31 31 H 1.08994 * 109.47122 * 29.99811 * 13 12 2 32 32 H 1.09006 * 109.46842 * 149.99791 * 13 12 2 33 33 H 1.08002 * 119.20647 * 0.02562 * 18 17 14 34 34 H 1.08000 * 119.21346 * 180.30759 * 19 18 17 35 35 H 1.08002 * 120.05502 * 179.68267 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6038 10 1 1.1675 -1.5866 -4.8165 11 1 3.1470 -0.1857 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 16 2.9704 0.1143 2.2861 15 8 2.8229 -0.5645 3.5258 16 8 2.6904 1.4973 2.1192 17 6 4.6444 -0.1181 1.7879 18 6 5.3851 0.9418 1.3824 19 6 6.7147 0.7953 0.9869 20 6 7.3233 -0.4154 0.9781 21 6 6.6088 -1.5685 1.3898 22 7 6.9793 -2.8362 1.4722 23 16 5.7870 -3.6910 1.9888 24 7 4.7073 -2.5842 2.1578 25 6 5.2178 -1.4144 1.8084 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 0.7085 1.1613 -3.4844 30 1 0.7377 -2.1444 1.9994 31 1 1.5296 -2.5968 0.4708 32 1 2.4630 -2.5819 1.9863 33 1 4.9366 1.9242 1.3699 34 1 7.2711 1.6670 0.6755 35 1 8.3526 -0.5011 0.6624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094940.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:12 Heat of formation + Delta-G solvation = -7.190110 kcal Electronic energy + Delta-G solvation = -24319.058405 eV Core-core repulsion = 20763.902526 eV Total energy + Delta-G solvation = -3555.155879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98507 -38.39247 -37.93420 -37.47836 -36.89263 -35.08396 -34.51874 -31.58504 -30.92224 -28.68720 -27.26813 -27.02279 -23.81866 -23.76587 -22.55033 -20.80161 -19.73715 -18.80145 -18.63235 -18.34327 -17.95161 -17.20750 -16.89927 -16.81953 -16.28687 -15.97171 -15.21281 -14.88520 -14.46711 -13.96115 -13.76287 -13.55124 -13.41215 -13.28820 -13.16943 -13.13105 -13.09161 -13.00135 -12.82192 -12.74170 -12.70756 -12.59124 -12.21124 -12.17396 -12.04661 -11.78439 -11.49819 -11.15492 -10.51714 -9.93223 -9.80266 -9.61872 -8.11233 -6.25467 -1.42903 -0.51010 0.23603 0.31158 0.36042 0.70132 1.39446 1.42442 1.51509 1.96930 2.27866 2.42961 2.74598 3.02890 3.16518 3.40407 3.77809 3.83195 3.91815 4.09565 4.17849 4.45857 4.66551 4.76837 4.78370 4.99067 5.00481 5.04597 5.06798 5.13325 5.14792 5.21634 5.59052 5.69530 5.70753 5.83525 6.09418 6.27829 6.82119 7.43431 8.93573 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.006308 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.406945 B = 4437.664252 C = 5109.089561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.270 3.730 3 H 0.035 0.965 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.982 5.982 13 C 0.098 3.902 14 S 2.695 3.305 15 O -0.981 6.981 16 O -0.986 6.986 17 C -0.653 4.653 18 C 0.037 3.963 19 C -0.117 4.117 20 C -0.004 4.004 21 C 0.042 3.958 22 N -0.599 5.599 23 S 0.885 5.115 24 N -0.635 5.635 25 C 0.125 3.875 26 H 0.022 0.978 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.196 0.804 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.279 -5.496 6.446 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.166 3.834 3 H 0.052 0.948 4 C -0.568 4.568 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.821 5.821 13 C -0.047 4.047 14 S 2.787 3.213 15 O -0.971 6.971 16 O -0.977 6.977 17 C -0.747 4.747 18 C 0.011 3.989 19 C -0.142 4.142 20 C -0.029 4.029 21 C -0.115 4.115 22 N -0.452 5.452 23 S 0.932 5.068 24 N -0.487 5.487 25 C -0.033 4.033 26 H 0.041 0.959 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.182 0.818 34 H 0.213 0.787 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 12.757 -7.214 7.453 16.442 hybrid contribution 0.390 1.140 -1.602 2.004 sum 13.147 -6.074 5.851 15.620 Atomic orbital electron populations 1.21934 0.97489 1.00035 1.00241 1.18507 0.92188 0.91704 0.80973 0.94762 1.21542 1.31516 1.12837 0.90939 0.92551 1.25574 0.95170 0.95600 1.01395 1.69990 1.37098 1.23687 1.24355 0.85605 0.78184 0.78587 0.79792 1.19788 1.20522 1.20460 1.57226 1.63613 1.22475 1.38805 1.21483 1.00712 0.80637 1.01916 1.01525 0.73909 0.72653 0.73185 1.93495 1.86397 1.75480 1.41726 1.93506 1.84474 1.32817 1.86859 1.30050 1.25923 0.96518 1.22254 1.21282 0.94865 0.98137 0.84624 1.21381 0.93629 0.99491 0.99659 1.21075 1.00894 0.87660 0.93271 1.21563 0.93126 0.91779 1.05074 1.72073 1.37434 1.09602 1.26123 1.78011 0.81686 1.15335 1.31734 1.71968 1.39552 1.07597 1.29563 1.20315 0.92801 0.90937 0.99251 0.95880 0.90787 0.94039 0.92515 0.92974 0.91153 0.89962 0.81811 0.78714 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 8.97 71.98 0.65 -6.03 16 2 C 0.27 13.57 2.62 44.25 0.12 13.69 16 3 H 0.03 1.90 6.91 -2.39 -0.02 1.88 16 4 C -0.53 -27.63 7.99 25.60 0.20 -27.43 16 5 H 0.06 2.93 7.33 -2.91 -0.02 2.91 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -50.13 11.32 21.44 0.24 -49.89 16 8 Si 0.95 41.75 29.54 68.60 2.03 43.78 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 12 N -0.98 -43.46 3.06 -520.43 -1.59 -45.05 16 13 C 0.10 3.84 9.28 127.77 1.19 5.02 16 14 S 2.69 113.85 5.56 -56.49 -0.31 113.53 16 15 O -0.98 -43.42 17.02 -128.00 -2.18 -45.59 16 16 O -0.99 -44.92 15.47 -128.00 -1.98 -46.90 16 17 C -0.65 -23.64 5.93 22.51 0.13 -23.51 16 18 C 0.04 1.07 9.43 21.94 0.21 1.28 16 19 C -0.12 -2.37 9.89 21.94 0.22 -2.15 16 20 C 0.00 -0.09 10.09 22.51 0.23 0.13 16 21 C 0.04 1.22 7.16 41.97 0.30 1.52 16 22 N -0.60 -15.72 11.44 -72.83 -0.83 -16.55 16 23 S 0.89 20.47 23.60 -56.49 -1.33 19.14 16 24 N -0.63 -20.88 9.33 -72.84 -0.68 -21.56 16 25 C 0.12 4.31 6.86 41.97 0.29 4.60 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 28 H 0.04 1.88 7.67 -2.38 -0.02 1.87 16 29 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.77 7.02 -2.39 -0.02 2.75 16 32 H 0.08 3.03 5.62 -2.38 -0.01 3.01 16 33 H 0.16 4.39 7.22 -2.91 -0.02 4.37 16 34 H 0.20 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -71.54 319.74 -1.53 -73.06 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.14 Total: 7.26 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 3.97 Total: -31.23 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -2.86 Total: -133.04 kcal Atomic # 8 Polarization: -88.34 SS G_CDS: -4.16 Total: -92.50 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 134.32 SS G_CDS: -1.65 Total: 132.67 kcal Total: -71.54 -1.53 -73.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094940.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.873 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds