Wall clock time and date at job start Tue Mar 31 2020 15:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48499 * 109.46716 * 239.99854 * 3 2 1 5 5 H 1.48501 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47155 * 119.99533 * 3 2 1 7 7 C 1.38804 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99608 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99954 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47192 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99792 * 359.97438 * 11 10 9 13 13 O 1.34233 * 119.99885 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99747 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47001 * 180.02562 * 14 13 11 16 16 O 1.42909 * 109.47200 * 65.00370 * 15 14 13 17 17 C 1.35897 * 117.00046 * 180.02562 * 16 15 14 18 18 C 1.38727 * 120.05648 * 179.97438 * 17 16 15 19 19 C 1.38146 * 119.94819 * 180.02562 * 18 17 16 20 20 C 1.38264 * 120.05197 * 0.03048 * 19 18 17 21 21 N 1.48007 * 119.94459 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99745 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00052 * 179.72330 * 21 20 19 24 24 C 1.38267 * 120.11170 * 0.24436 * 20 19 18 25 25 C 1.38145 * 120.05652 * 359.45728 * 24 20 19 26 26 H 0.96999 * 120.00240 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47598 * 59.99383 * 10 9 7 28 28 H 1.08998 * 109.46860 * 299.99366 * 10 9 7 29 29 H 1.08998 * 109.47017 * 60.00237 * 14 13 11 30 30 H 1.09004 * 109.47295 * 299.99972 * 14 13 11 31 31 H 1.08997 * 109.47055 * 305.00221 * 15 14 13 32 32 H 1.08997 * 109.47214 * 184.99755 * 15 14 13 33 33 H 1.08002 * 120.02536 * 0.02562 * 18 17 16 34 34 H 1.07994 * 119.97339 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.97348 * 179.73305 * 24 20 19 36 36 H 1.08000 * 120.03074 * 180.25062 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7954 -5.5015 0.0021 13 8 2.8405 -6.3389 0.0008 14 6 2.2608 -7.6702 0.0020 15 6 3.3797 -8.7137 0.0020 16 8 4.1172 -8.6214 1.2226 17 6 5.1542 -9.4848 1.3836 18 6 5.9133 -9.4501 2.5443 19 6 6.9674 -10.3285 2.7054 20 6 7.2664 -11.2412 1.7107 21 7 8.3965 -12.1807 1.8856 22 8 9.0626 -12.1491 2.9049 23 8 8.6577 -12.9885 1.0123 24 6 6.5149 -11.2739 0.5506 25 6 5.4560 -10.4018 0.3873 26 1 -0.4850 0.8400 -0.0004 27 1 3.1244 -3.7314 0.8905 28 1 3.1242 -3.7314 -0.8895 29 1 1.6437 -7.7986 -0.8873 30 1 1.6455 -7.7978 0.8927 31 1 4.0469 -8.5309 -0.8404 32 1 2.9472 -9.7102 -0.0866 33 1 5.6804 -8.7371 3.3212 34 1 7.5588 -10.3016 3.6086 35 1 6.7531 -11.9848 -0.2267 36 1 4.8667 -10.4305 -0.5174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063971335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:29 Heat of formation + Delta-G solvation = -100.182623 kcal Electronic energy + Delta-G solvation = -23239.762272 eV Core-core repulsion = 19205.528313 eV Total energy + Delta-G solvation = -4034.233959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.48245 -40.99419 -40.15246 -38.31935 -36.85754 -36.33129 -32.54751 -32.44419 -31.89718 -30.89624 -29.42990 -26.52203 -25.63387 -24.67404 -23.12684 -22.37273 -21.18506 -19.78522 -19.04475 -18.96736 -18.07970 -17.82479 -17.47770 -16.82797 -16.55855 -16.20904 -15.78015 -15.43522 -14.90247 -14.58279 -14.46264 -14.23511 -13.90597 -13.78068 -13.48772 -12.97196 -12.73033 -12.33839 -12.23212 -11.93696 -11.81336 -11.64238 -11.51989 -11.44302 -11.16933 -11.11128 -10.88173 -10.73641 -10.18334 -10.06650 -9.97831 -9.33609 -9.16710 -8.45098 -6.68211 -6.33385 -4.06950 -0.51063 0.34189 0.96760 1.08232 2.29226 2.42708 2.50178 2.72243 3.17385 3.17557 3.22731 3.39159 3.75944 3.87601 4.06493 4.08771 4.18729 4.37023 4.41929 4.52161 4.60784 4.85767 4.95362 5.02566 5.04536 5.11137 5.18965 5.21191 5.34503 5.46760 5.58282 5.67486 5.98277 6.03597 6.44054 6.49196 7.32810 7.49048 7.98753 8.23887 9.12069 10.74022 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.023590 B = 0.001800 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.648327 B =15549.190454 C =16383.444002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.076 0.924 9 S -0.058 6.058 10 C -0.129 4.129 11 C 0.481 3.519 12 O -0.487 6.487 13 O -0.357 6.357 14 C 0.065 3.935 15 C 0.056 3.944 16 O -0.290 6.290 17 C 0.191 3.809 18 C -0.150 4.150 19 C -0.013 4.013 20 C -0.091 4.091 21 N 0.036 4.964 22 O -0.166 6.166 23 O -0.169 6.169 24 C -0.010 4.010 25 C -0.213 4.213 26 H 0.271 0.729 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.000 -22.475 1.203 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.686 4.686 8 H 0.094 0.906 9 S 0.169 5.831 10 C -0.277 4.277 11 C 0.323 3.677 12 O -0.372 6.372 13 O -0.275 6.275 14 C -0.009 4.009 15 C -0.019 4.019 16 O -0.202 6.202 17 C 0.143 3.857 18 C -0.170 4.170 19 C -0.032 4.032 20 C -0.175 4.175 21 N 0.553 4.447 22 O -0.381 6.381 23 O -0.383 6.383 24 C -0.029 4.029 25 C -0.233 4.233 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.710 -22.045 1.234 23.736 hybrid contribution 2.049 0.808 -0.198 2.211 sum 10.759 -21.237 1.036 23.830 Atomic orbital electron populations 1.69992 1.05993 1.27832 1.46371 1.25007 0.95080 0.99139 0.94251 0.86168 0.79213 0.80886 0.78939 1.19825 1.20737 1.19803 1.22793 0.94988 0.91101 1.59701 0.90600 1.85412 1.04199 0.96612 1.96913 1.23312 1.07117 0.90697 1.06562 1.23349 0.85136 0.87013 0.72227 1.90680 1.16862 1.85565 1.44078 1.86568 1.41107 1.14787 1.85062 1.22984 0.94140 0.79316 1.04480 1.23178 0.93829 0.99260 0.85631 1.86270 1.40438 1.53432 1.40032 1.19427 0.86230 0.86862 0.93167 1.20516 0.95975 1.02390 0.98080 1.20862 0.94704 0.89920 0.97730 1.20983 0.95511 1.00163 1.00822 1.43521 1.00989 1.00274 0.99871 1.94543 1.48972 1.76517 1.18091 1.94536 1.74175 1.32980 1.36632 1.20818 0.91011 0.96267 0.94796 1.21317 1.01444 0.99097 1.01396 0.91955 0.87804 0.87861 0.88401 0.89739 0.89791 0.88950 0.82424 0.82213 0.82643 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.22 13.22 55.49 0.73 -24.49 16 2 C 0.08 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -14.71 9.50 30.94 0.29 -14.41 16 8 H 0.08 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.48 20.57 -107.50 -2.21 -3.70 16 10 C -0.13 -2.48 6.27 36.01 0.23 -2.26 16 11 C 0.48 8.46 7.98 36.01 0.29 8.75 16 12 O -0.49 -9.85 15.61 -18.75 -0.29 -10.15 16 13 O -0.36 -4.92 10.19 -42.03 -0.43 -5.35 16 14 C 0.07 0.62 5.84 37.16 0.22 0.84 16 15 C 0.06 0.35 5.13 37.16 0.19 0.54 16 16 O -0.29 -2.42 10.11 -22.98 -0.23 -2.66 16 17 C 0.19 1.35 6.69 -39.22 -0.26 1.09 16 18 C -0.15 -0.99 9.99 -39.43 -0.39 -1.38 16 19 C -0.01 -0.09 9.55 -39.61 -0.38 -0.47 16 20 C -0.09 -0.75 6.85 -79.93 -0.55 -1.30 16 21 N 0.04 0.39 4.45 33.97 0.15 0.54 16 22 O -0.17 -1.92 18.44 -29.46 -0.54 -2.46 16 23 O -0.17 -1.93 18.44 -29.46 -0.54 -2.47 16 24 C -0.01 -0.06 9.55 -39.60 -0.38 -0.44 16 25 C -0.21 -1.18 9.04 -39.43 -0.36 -1.53 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.10 1.87 8.14 -51.91 -0.42 1.44 16 28 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 29 H 0.10 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.08 0.43 7.66 -51.93 -0.40 0.03 16 32 H 0.09 0.28 7.66 -51.93 -0.40 -0.11 16 33 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.16 0.86 7.60 -52.49 -0.40 0.46 16 35 H 0.16 0.77 7.61 -52.49 -0.40 0.37 16 36 H 0.15 0.45 6.30 -52.49 -0.33 0.12 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -34.02 347.35 -7.94 -41.95 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.58 Total: -3.52 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.20 Total: -8.61 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.89 Total: -23.95 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -2.04 Total: -23.09 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.02 -7.94 -41.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063971335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.232 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds