Wall clock time and date at job start Tue Mar 31 2020 15:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48499 * 109.46716 * 239.99854 * 3 2 1 5 5 H 1.48501 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47155 * 119.99533 * 3 2 1 7 7 C 1.38804 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99608 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99954 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47192 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99792 * 359.97438 * 11 10 9 13 13 O 1.34233 * 119.99885 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99747 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47001 * 180.02562 * 14 13 11 16 16 O 1.42909 * 109.47200 * 65.00370 * 15 14 13 17 17 C 1.35897 * 117.00046 * 180.02562 * 16 15 14 18 18 C 1.38727 * 120.05648 * 179.97438 * 17 16 15 19 19 C 1.38146 * 119.94819 * 180.02562 * 18 17 16 20 20 C 1.38264 * 120.05197 * 0.03048 * 19 18 17 21 21 N 1.48007 * 119.94459 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99745 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00052 * 179.72330 * 21 20 19 24 24 C 1.38267 * 120.11170 * 0.24436 * 20 19 18 25 25 C 1.38145 * 120.05652 * 359.45728 * 24 20 19 26 26 H 0.96999 * 120.00240 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47598 * 59.99383 * 10 9 7 28 28 H 1.08998 * 109.46860 * 299.99366 * 10 9 7 29 29 H 1.08998 * 109.47017 * 60.00237 * 14 13 11 30 30 H 1.09004 * 109.47295 * 299.99972 * 14 13 11 31 31 H 1.08997 * 109.47055 * 305.00221 * 15 14 13 32 32 H 1.08997 * 109.47214 * 184.99755 * 15 14 13 33 33 H 1.08002 * 120.02536 * 0.02562 * 18 17 16 34 34 H 1.07994 * 119.97339 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.97348 * 179.73305 * 24 20 19 36 36 H 1.08000 * 120.03074 * 180.25062 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7954 -5.5015 0.0021 13 8 2.8405 -6.3389 0.0008 14 6 2.2608 -7.6702 0.0020 15 6 3.3797 -8.7137 0.0020 16 8 4.1172 -8.6214 1.2226 17 6 5.1542 -9.4848 1.3836 18 6 5.9133 -9.4501 2.5443 19 6 6.9674 -10.3285 2.7054 20 6 7.2664 -11.2412 1.7107 21 7 8.3965 -12.1807 1.8856 22 8 9.0626 -12.1491 2.9049 23 8 8.6577 -12.9885 1.0123 24 6 6.5149 -11.2739 0.5506 25 6 5.4560 -10.4018 0.3873 26 1 -0.4850 0.8400 -0.0004 27 1 3.1244 -3.7314 0.8905 28 1 3.1242 -3.7314 -0.8895 29 1 1.6437 -7.7986 -0.8873 30 1 1.6455 -7.7978 0.8927 31 1 4.0469 -8.5309 -0.8404 32 1 2.9472 -9.7102 -0.0866 33 1 5.6804 -8.7371 3.3212 34 1 7.5588 -10.3016 3.6086 35 1 6.7531 -11.9848 -0.2267 36 1 4.8667 -10.4305 -0.5174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063971335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:28 Heat of formation + Delta-G solvation = -119.842646 kcal Electronic energy + Delta-G solvation = -23240.614794 eV Core-core repulsion = 19205.528313 eV Total energy + Delta-G solvation = -4035.086481 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.22004 -41.68698 -41.27422 -38.91691 -37.65557 -37.54839 -34.61548 -33.07480 -32.43789 -31.79671 -30.63273 -27.71642 -27.20930 -25.29775 -23.74359 -23.07639 -22.34398 -20.40358 -19.93614 -19.73176 -19.60044 -18.77298 -18.57620 -17.70052 -17.56665 -17.01118 -16.89992 -16.72085 -16.03642 -15.94642 -15.33213 -14.95327 -14.76820 -14.62857 -14.45178 -14.20674 -13.82356 -13.57149 -13.21223 -13.06016 -12.88085 -12.72852 -12.66075 -12.36283 -12.32057 -12.29725 -12.25756 -11.80973 -11.73712 -11.59636 -11.15042 -10.53086 -10.39106 -9.86890 -8.73958 -8.38004 -6.17550 -1.20773 -0.11457 0.29387 0.42029 1.00888 1.11371 1.40885 1.44251 1.53339 1.77956 1.86897 2.21599 2.23547 2.97133 3.23316 3.29384 3.44261 3.54932 3.59242 3.78662 3.87963 3.95281 4.15231 4.17810 4.24780 4.28627 4.43651 4.48675 4.53672 4.63223 4.70687 4.87823 5.06713 5.20943 5.32527 5.40494 5.99122 6.17267 6.49234 6.66808 7.03940 8.70778 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.023590 B = 0.001800 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.648327 B =15549.190454 C =16383.444002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.137 6.137 10 C -0.111 4.111 11 C 0.492 3.508 12 O -0.520 6.520 13 O -0.350 6.350 14 C 0.054 3.946 15 C 0.056 3.944 16 O -0.311 6.311 17 C 0.187 3.813 18 C -0.155 4.155 19 C -0.013 4.013 20 C -0.108 4.108 21 N 0.038 4.962 22 O -0.194 6.194 23 O -0.185 6.185 24 C -0.009 4.009 25 C -0.202 4.202 26 H 0.273 0.727 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -22.799 0.416 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.104 0.896 9 S 0.090 5.910 10 C -0.259 4.259 11 C 0.334 3.666 12 O -0.408 6.408 13 O -0.267 6.267 14 C -0.019 4.019 15 C -0.018 4.018 16 O -0.223 6.223 17 C 0.139 3.861 18 C -0.174 4.174 19 C -0.032 4.032 20 C -0.192 4.192 21 N 0.550 4.450 22 O -0.404 6.404 23 O -0.398 6.398 24 C -0.028 4.028 25 C -0.221 4.221 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.150 0.850 33 H 0.185 0.815 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.831 -22.412 0.464 24.478 hybrid contribution 1.686 0.781 0.032 1.858 sum 11.517 -21.631 0.496 24.511 Atomic orbital electron populations 1.70147 1.07878 1.28849 1.47629 1.26097 0.95973 1.03229 0.93566 0.85009 0.77824 0.75700 0.79531 1.18642 1.20411 1.18716 1.23159 0.95499 0.91644 1.59397 0.89626 1.85495 1.09257 0.99068 1.97176 1.23094 1.04233 0.90378 1.08209 1.22870 0.84715 0.87339 0.71639 1.90675 1.18235 1.86076 1.45800 1.86526 1.40227 1.15864 1.84110 1.23446 0.95965 0.77489 1.05033 1.23382 0.93268 0.99713 0.85439 1.86233 1.40923 1.54030 1.41101 1.19571 0.85934 0.86962 0.93601 1.20663 0.95765 1.02404 0.98562 1.20980 0.94841 0.89579 0.97829 1.21214 0.95303 1.00425 1.02298 1.43866 1.01356 1.00364 0.99409 1.94528 1.50132 1.77199 1.18570 1.94509 1.74760 1.33837 1.36697 1.21066 0.90761 0.96582 0.94381 1.21595 1.00882 0.97677 1.01911 0.91848 0.86277 0.85963 0.86945 0.90363 0.88002 0.84975 0.81544 0.81458 0.81243 0.79834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.70 13.22 21.65 0.29 -53.41 16 2 C 0.02 0.91 5.49 84.86 0.47 1.38 16 3 Si 1.00 41.98 29.55 68.60 2.03 44.01 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.55 -30.00 9.50 67.96 0.65 -29.35 16 8 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.14 -7.15 20.57 -56.49 -1.16 -8.31 16 10 C -0.11 -4.15 6.27 71.24 0.45 -3.70 16 11 C 0.49 16.73 7.98 71.24 0.57 17.30 16 12 O -0.52 -20.95 15.61 21.97 0.34 -20.61 16 13 O -0.35 -8.85 10.19 -48.80 -0.50 -9.35 16 14 C 0.05 0.89 5.84 71.98 0.42 1.31 16 15 C 0.06 0.47 5.13 71.98 0.37 0.84 16 16 O -0.31 -4.22 10.11 -88.99 -0.90 -5.11 16 17 C 0.19 2.10 6.69 22.51 0.15 2.25 16 18 C -0.15 -1.76 9.99 22.36 0.22 -1.53 16 19 C -0.01 -0.17 9.55 22.25 0.21 0.05 16 20 C -0.11 -1.66 6.85 36.39 0.25 -1.41 16 21 N 0.04 0.82 4.45 -46.44 -0.21 0.61 16 22 O -0.19 -4.57 18.44 18.88 0.35 -4.22 16 23 O -0.19 -4.20 18.44 18.89 0.35 -3.86 16 24 C -0.01 -0.09 9.55 22.25 0.21 0.12 16 25 C -0.20 -1.49 9.04 22.37 0.20 -1.29 16 26 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 28 H 0.12 4.11 8.14 -2.40 -0.02 4.09 16 29 H 0.11 1.56 8.13 -2.39 -0.02 1.54 16 30 H 0.08 1.41 8.13 -2.38 -0.02 1.40 16 31 H 0.10 0.54 7.66 -2.39 -0.02 0.52 16 32 H 0.13 0.12 7.66 -2.39 -0.02 0.11 16 33 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.17 1.73 7.60 -2.91 -0.02 1.71 16 35 H 0.17 1.25 7.61 -2.91 -0.02 1.23 16 36 H 0.18 0.13 6.30 -2.91 -0.02 0.11 16 Total: -1.00 -75.72 347.35 5.88 -69.84 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.13 Total: 4.46 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.17 Total: -14.05 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.08 Total: -52.80 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.36 Total: -43.15 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -1.16 Total: -8.31 kcal Total: -75.72 5.88 -69.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063971335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.003 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds