Wall clock time and date at job start Tue Mar 31 2020 14:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39763 * 125.83896 * 2 1 4 4 C 1.36172 * 107.81294 * 180.02562 * 3 2 1 5 5 N 1.39214 * 126.22126 * 180.02562 * 4 3 2 6 6 S 1.65604 * 119.99753 * 0.02562 * 5 4 3 7 7 O 1.42108 * 106.39869 * 178.53794 * 6 5 4 8 8 O 1.42096 * 106.40575 * 311.46124 * 6 5 4 9 9 C 1.76199 * 107.22052 * 65.00248 * 6 5 4 10 10 C 1.33387 * 125.20299 * 89.99496 * 9 6 5 11 11 C 1.38429 * 114.91984 * 179.97438 * 10 9 6 12 12 C 1.33392 * 114.92059 * 0.02562 * 11 10 9 13 13 S 1.75882 * 109.59418 * 359.75771 * 12 11 10 14 14 N 1.35240 * 107.56062 * 0.02562 * 4 3 2 15 15 C 1.46498 * 126.04466 * 180.02562 * 14 4 3 16 16 C 1.50696 * 109.47390 * 269.99895 * 15 14 4 17 17 H 1.08004 * 119.99961 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00505 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00430 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99611 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47534 * 89.99769 * 20 18 16 22 22 H 1.48506 * 109.47213 * 209.99816 * 20 18 16 23 23 H 1.48502 * 109.47176 * 329.99446 * 20 18 16 24 24 N 1.30838 * 125.83641 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.47362 * 270.00252 * 1 2 3 26 26 H 1.08998 * 109.46866 * 29.99770 * 1 2 3 27 27 H 1.08996 * 109.47434 * 149.99921 * 1 2 3 28 28 H 1.08007 * 126.09806 * 0.02562 * 3 2 1 29 29 H 0.96993 * 120.00434 * 179.97438 * 5 4 3 30 30 H 1.07995 * 122.54483 * 359.95810 * 10 9 6 31 31 H 1.08000 * 122.54313 * 180.02562 * 11 10 9 32 32 H 1.07998 * 125.20481 * 180.02562 * 12 11 10 33 33 H 1.08995 * 109.47248 * 30.00436 * 15 14 4 34 34 H 1.09009 * 109.47221 * 150.00031 * 15 14 4 35 35 H 0.97002 * 120.00499 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6202 0.7116 -0.0006 5 7 4.7500 1.5250 -0.0003 6 16 4.5840 3.1727 0.0015 7 8 5.8997 3.7085 0.0362 8 8 3.6452 3.4826 -1.0192 9 6 3.8248 3.6188 1.5277 10 6 4.4765 3.9120 2.6540 11 6 3.6668 4.2350 3.7293 12 6 2.3575 4.2037 3.4763 13 16 2.0918 3.7521 1.7973 14 7 3.6093 -0.6407 -0.0015 15 6 4.7867 -1.5123 -0.0018 16 6 5.1908 -1.8103 -1.4227 17 1 4.6272 -1.3918 -2.2435 18 6 6.2807 -2.6162 -1.6750 19 7 6.6337 -2.8758 -2.9149 20 14 7.2561 -3.3393 -0.2554 21 1 6.6820 -4.6565 0.1195 22 1 8.6721 -3.5156 -0.6667 23 1 7.1897 -2.4207 0.9095 24 7 2.2731 -1.0607 -0.0005 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.9905 2.1599 0.0004 29 1 5.6344 1.1268 -0.0004 30 1 5.5543 3.8981 2.7220 31 1 4.0649 4.4929 4.6995 32 1 1.5796 4.4261 4.1917 33 1 5.6081 -1.0136 0.5126 34 1 4.5491 -2.4443 0.5113 35 1 7.4002 -3.4431 -3.0925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066247935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:31 Heat of formation + Delta-G solvation = 44.524692 kcal Electronic energy + Delta-G solvation = -23460.180242 eV Core-core repulsion = 19907.266886 eV Total energy + Delta-G solvation = -3552.913357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78795 -38.05717 -37.27030 -35.98754 -35.20826 -33.89324 -32.21757 -30.15473 -29.57579 -28.20052 -26.40768 -24.66101 -22.62765 -21.11147 -20.53457 -19.78149 -19.32319 -18.46933 -17.24030 -17.16441 -16.94301 -16.13314 -15.40690 -15.10986 -14.79619 -14.65787 -14.18285 -13.57772 -13.28811 -13.18304 -12.88140 -12.80892 -12.72617 -12.57049 -12.37962 -12.18447 -12.11246 -12.01492 -11.88062 -11.60164 -11.46655 -10.99452 -10.97203 -10.82187 -10.32321 -9.96570 -9.75881 -9.58926 -8.85968 -8.72952 -8.15538 -7.76922 -6.33060 -4.38036 0.03507 0.37725 1.23368 1.57962 2.21803 2.43754 2.77262 3.09267 3.14211 3.17233 3.21164 3.40832 3.60240 4.14069 4.40863 4.62888 4.88300 4.90958 5.01876 5.11138 5.13438 5.54392 5.66275 5.73570 5.86044 5.91563 5.93976 6.01254 6.15391 6.20766 6.31997 6.64958 6.78010 7.17542 7.21710 7.64922 8.21132 8.38657 8.73088 9.20737 10.79144 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.004828 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.773466 B = 5798.539399 C = 6587.424102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.078 3.922 3 C -0.329 4.329 4 C 0.337 3.663 5 N -1.025 6.025 6 S 2.728 3.272 7 O -0.941 6.941 8 O -0.930 6.930 9 C -0.796 4.796 10 C 0.007 3.993 11 C -0.166 4.166 12 C -0.183 4.183 13 S 0.247 5.753 14 N -0.332 5.332 15 C 0.228 3.772 16 C -0.549 4.549 17 H 0.084 0.916 18 C 0.081 3.919 19 N -0.881 5.881 20 Si 0.873 3.127 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.265 1.265 24 N -0.281 5.281 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.434 0.566 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.172 0.828 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 14.016 14.301 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.364 4.364 4 C 0.110 3.890 5 N -0.777 5.777 6 S 2.813 3.187 7 O -0.931 6.931 8 O -0.920 6.920 9 C -0.998 4.998 10 C -0.029 4.029 11 C -0.197 4.197 12 C -0.322 4.322 13 S 0.514 5.486 14 N -0.116 5.116 15 C 0.108 3.892 16 C -0.587 4.587 17 H 0.102 0.898 18 C -0.124 4.124 19 N -0.517 5.517 20 Si 0.699 3.301 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.190 1.190 24 N -0.105 5.105 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.272 0.728 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.190 0.810 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.936 12.993 12.603 20.186 hybrid contribution 2.254 0.249 2.196 3.157 sum -6.681 13.241 14.799 20.952 Atomic orbital electron populations 1.20100 0.87093 1.03080 1.02317 1.21805 0.96534 0.90019 1.00395 1.20588 0.89022 0.99886 1.26857 1.17413 0.86585 0.84194 1.00782 1.52969 1.13161 1.24972 1.86587 1.01199 0.73558 0.70891 0.73006 1.93625 1.36872 1.75682 1.86924 1.93644 1.63874 1.81757 1.52699 1.35777 1.09525 1.28512 1.26010 1.20037 1.01727 0.91412 0.89751 1.20370 0.92608 1.05961 1.00796 1.26416 1.00801 1.03610 1.01341 1.84314 0.99035 1.61599 1.03646 1.48917 1.06376 1.02000 1.54315 1.20030 0.79215 0.89918 0.99994 1.21183 1.14456 1.32778 0.90247 0.89803 1.24815 0.96539 0.95246 0.95815 1.69862 1.26814 1.36418 1.18634 0.86918 0.80137 0.80584 0.82507 1.19460 1.20391 1.19002 1.77411 0.85642 1.21576 1.25899 0.91056 0.90727 0.90996 0.84053 0.72825 0.82792 0.83464 0.81037 0.93938 0.92913 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.44 36.01 0.38 -0.49 16 2 C 0.08 1.42 7.21 -82.44 -0.59 0.82 16 3 C -0.33 -5.96 8.70 -39.75 -0.35 -6.31 16 4 C 0.34 6.62 7.58 -153.41 -1.16 5.46 16 5 N -1.03 -17.61 5.87 31.10 0.18 -17.43 16 6 S 2.73 42.60 5.44 -107.50 -0.58 42.02 16 7 O -0.94 -15.62 17.80 -57.17 -1.02 -16.64 16 8 O -0.93 -16.63 16.08 -57.17 -0.92 -17.55 16 9 C -0.80 -10.26 6.16 29.04 0.18 -10.08 16 10 C 0.01 0.07 9.84 -41.21 -0.41 -0.33 16 11 C -0.17 -1.47 10.18 -41.20 -0.42 -1.89 16 12 C -0.18 -1.56 11.23 29.04 0.33 -1.23 16 13 S 0.25 2.74 20.36 -107.50 -2.19 0.56 16 14 N -0.33 -7.36 3.60 -61.64 -0.22 -7.58 16 15 C 0.23 5.27 5.07 -5.20 -0.03 5.25 16 16 C -0.55 -15.05 9.94 -34.44 -0.34 -15.39 16 17 H 0.08 2.62 8.06 -52.48 -0.42 2.19 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 19 N -0.88 -25.84 13.96 55.43 0.77 -25.07 16 20 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -5.53 6.54 56.52 0.37 -5.16 16 24 N -0.28 -6.06 12.56 33.65 0.42 -5.63 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.14 2.26 4.30 -52.47 -0.23 2.03 16 29 H 0.43 7.01 8.09 -34.47 -0.28 6.73 16 30 H 0.15 1.40 8.05 -52.49 -0.42 0.98 16 31 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.04 0.90 6.55 -51.93 -0.34 0.56 16 34 H 0.05 1.21 7.57 -51.92 -0.39 0.82 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -34.42 327.20 -9.17 -43.59 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -3.36 Total: 5.85 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -2.51 Total: -22.07 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 1.16 Total: -55.71 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.94 Total: -34.19 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Atomic # 16 Polarization: 45.35 SS G_CDS: -2.77 Total: 42.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.42 -9.17 -43.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066247935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.118 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds