Wall clock time and date at job start Tue Mar 31 2020 14:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39763 * 125.83896 * 2 1 4 4 C 1.36172 * 107.81294 * 180.02562 * 3 2 1 5 5 N 1.39214 * 126.22126 * 180.02562 * 4 3 2 6 6 S 1.65604 * 119.99753 * 0.02562 * 5 4 3 7 7 O 1.42108 * 106.39869 * 178.53794 * 6 5 4 8 8 O 1.42096 * 106.40575 * 311.46124 * 6 5 4 9 9 C 1.76199 * 107.22052 * 65.00248 * 6 5 4 10 10 C 1.33387 * 125.20299 * 89.99496 * 9 6 5 11 11 C 1.38429 * 114.91984 * 179.97438 * 10 9 6 12 12 C 1.33392 * 114.92059 * 0.02562 * 11 10 9 13 13 S 1.75882 * 109.59418 * 359.75771 * 12 11 10 14 14 N 1.35240 * 107.56062 * 0.02562 * 4 3 2 15 15 C 1.46498 * 126.04466 * 180.02562 * 14 4 3 16 16 C 1.50696 * 109.47390 * 269.99895 * 15 14 4 17 17 H 1.08004 * 119.99961 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00505 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00430 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99611 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47534 * 89.99769 * 20 18 16 22 22 H 1.48506 * 109.47213 * 209.99816 * 20 18 16 23 23 H 1.48502 * 109.47176 * 329.99446 * 20 18 16 24 24 N 1.30838 * 125.83641 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.47362 * 270.00252 * 1 2 3 26 26 H 1.08998 * 109.46866 * 29.99770 * 1 2 3 27 27 H 1.08996 * 109.47434 * 149.99921 * 1 2 3 28 28 H 1.08007 * 126.09806 * 0.02562 * 3 2 1 29 29 H 0.96993 * 120.00434 * 179.97438 * 5 4 3 30 30 H 1.07995 * 122.54483 * 359.95810 * 10 9 6 31 31 H 1.08000 * 122.54313 * 180.02562 * 11 10 9 32 32 H 1.07998 * 125.20481 * 180.02562 * 12 11 10 33 33 H 1.08995 * 109.47248 * 30.00436 * 15 14 4 34 34 H 1.09009 * 109.47221 * 150.00031 * 15 14 4 35 35 H 0.97002 * 120.00499 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6202 0.7116 -0.0006 5 7 4.7500 1.5250 -0.0003 6 16 4.5840 3.1727 0.0015 7 8 5.8997 3.7085 0.0362 8 8 3.6452 3.4826 -1.0192 9 6 3.8248 3.6188 1.5277 10 6 4.4765 3.9120 2.6540 11 6 3.6668 4.2350 3.7293 12 6 2.3575 4.2037 3.4763 13 16 2.0918 3.7521 1.7973 14 7 3.6093 -0.6407 -0.0015 15 6 4.7867 -1.5123 -0.0018 16 6 5.1908 -1.8103 -1.4227 17 1 4.6272 -1.3918 -2.2435 18 6 6.2807 -2.6162 -1.6750 19 7 6.6337 -2.8758 -2.9149 20 14 7.2561 -3.3393 -0.2554 21 1 6.6820 -4.6565 0.1195 22 1 8.6721 -3.5156 -0.6667 23 1 7.1897 -2.4207 0.9095 24 7 2.2731 -1.0607 -0.0005 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 1.9905 2.1599 0.0004 29 1 5.6344 1.1268 -0.0004 30 1 5.5543 3.8981 2.7220 31 1 4.0649 4.4929 4.6995 32 1 1.5796 4.4261 4.1917 33 1 5.6081 -1.0136 0.5126 34 1 4.5491 -2.4443 0.5113 35 1 7.4002 -3.4431 -3.0925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066247935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:30 Heat of formation + Delta-G solvation = 18.786417 kcal Electronic energy + Delta-G solvation = -23461.296338 eV Core-core repulsion = 19907.266886 eV Total energy + Delta-G solvation = -3554.029452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.28633 -38.91831 -38.47564 -37.29292 -36.61901 -35.72313 -34.02313 -31.11258 -30.95881 -29.68121 -28.02615 -25.47185 -24.43217 -22.51030 -21.72257 -21.03171 -20.30666 -19.59200 -19.27596 -18.58696 -18.37302 -17.05423 -16.79097 -16.46882 -16.37244 -15.83198 -15.66544 -15.01054 -14.59544 -14.27132 -14.15727 -13.97864 -13.89150 -13.74772 -13.62531 -13.59285 -13.40091 -13.32472 -13.21434 -13.06053 -12.75751 -12.56447 -12.44652 -11.98884 -11.84562 -11.80099 -11.42009 -10.94157 -10.38947 -9.74583 -9.57655 -9.21395 -8.44081 -6.56765 -1.10572 -0.50508 0.37316 0.81549 0.93440 1.30060 1.34465 1.35335 1.43466 1.58711 1.81108 1.93167 2.22691 2.40734 2.87598 3.17198 3.54034 3.70349 4.03026 4.28750 4.34993 4.39388 4.43678 4.51036 4.64370 4.74684 4.86153 4.95341 5.03576 5.12319 5.15561 5.19378 5.31674 5.42506 5.83272 5.90435 6.26337 6.48245 6.88400 7.07613 8.72555 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.004828 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.773466 B = 5798.539399 C = 6587.424102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.084 3.916 3 C -0.331 4.331 4 C 0.330 3.670 5 N -1.029 6.029 6 S 2.737 3.263 7 O -0.957 6.957 8 O -0.962 6.962 9 C -0.822 4.822 10 C 0.015 3.985 11 C -0.173 4.173 12 C -0.154 4.154 13 S 0.217 5.783 14 N -0.360 5.360 15 C 0.235 3.765 16 C -0.557 4.557 17 H 0.024 0.976 18 C 0.022 3.978 19 N -0.935 5.935 20 Si 0.950 3.050 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.233 1.233 24 N -0.324 5.324 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.162 0.838 29 H 0.435 0.565 30 H 0.167 0.833 31 H 0.183 0.817 32 H 0.211 0.789 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 15.142 18.293 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.364 4.364 4 C 0.104 3.896 5 N -0.779 5.779 6 S 2.827 3.173 7 O -0.948 6.948 8 O -0.952 6.952 9 C -1.028 5.028 10 C -0.022 4.022 11 C -0.203 4.203 12 C -0.292 4.292 13 S 0.484 5.516 14 N -0.144 5.144 15 C 0.115 3.885 16 C -0.596 4.596 17 H 0.043 0.957 18 C -0.178 4.178 19 N -0.573 5.573 20 Si 0.770 3.230 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.155 1.155 24 N -0.148 5.148 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.179 0.821 29 H 0.272 0.728 30 H 0.185 0.815 31 H 0.200 0.800 32 H 0.228 0.772 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.600 14.131 16.556 23.789 hybrid contribution 2.326 0.058 0.984 2.527 sum -7.274 14.189 17.540 23.704 Atomic orbital electron populations 1.20348 0.83382 1.04260 1.04614 1.22697 0.98743 0.89086 0.97642 1.20947 0.88503 1.00935 1.26061 1.17777 0.87865 0.83692 1.00288 1.53097 1.12733 1.25295 1.86764 1.00525 0.73016 0.70124 0.73599 1.93594 1.37891 1.75632 1.87663 1.93595 1.64392 1.81978 1.55219 1.35157 1.10673 1.31928 1.25069 1.20471 1.02837 0.89344 0.89554 1.20717 0.92456 1.05632 1.01502 1.26880 1.01761 1.00885 0.99678 1.84353 0.98022 1.62780 1.06463 1.48794 1.06357 1.02686 1.56536 1.19805 0.80680 0.90923 0.97111 1.21278 1.14238 1.32838 0.91207 0.95721 1.25863 0.97577 0.95299 0.99090 1.70031 1.27877 1.37697 1.21667 0.85705 0.77904 0.80177 0.79196 1.18743 1.19958 1.15539 1.77354 0.85802 1.23448 1.28243 0.88065 0.88496 0.90844 0.82107 0.72760 0.81535 0.80014 0.77198 0.91452 0.92423 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.44 71.24 0.74 -0.86 16 2 C 0.08 3.02 7.21 43.08 0.31 3.33 16 3 C -0.33 -11.91 8.70 22.16 0.19 -11.72 16 4 C 0.33 13.17 7.58 131.43 1.00 14.16 16 5 N -1.03 -36.10 5.87 -55.50 -0.33 -36.42 16 6 S 2.74 86.51 5.44 -56.49 -0.31 86.21 16 7 O -0.96 -32.14 17.80 -128.00 -2.28 -34.42 16 8 O -0.96 -35.37 16.08 -128.00 -2.06 -37.43 16 9 C -0.82 -20.07 6.16 66.72 0.41 -19.66 16 10 C 0.02 0.29 9.84 21.22 0.21 0.50 16 11 C -0.17 -2.30 10.18 21.22 0.22 -2.08 16 12 C -0.15 -1.93 11.23 66.72 0.75 -1.18 16 13 S 0.22 4.36 20.36 -56.49 -1.15 3.21 16 14 N -0.36 -16.23 3.60 -348.92 -1.26 -17.49 16 15 C 0.23 10.98 5.07 85.63 0.43 11.42 16 16 C -0.56 -31.94 9.94 25.60 0.25 -31.69 16 17 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 18 C 0.02 1.23 5.47 84.66 0.46 1.69 16 19 N -0.93 -57.08 13.96 21.45 0.30 -56.78 16 20 Si 0.95 40.37 27.47 68.60 1.88 42.25 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 24 N -0.32 -14.17 12.56 -47.45 -0.60 -14.77 16 25 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.16 5.06 4.30 -2.92 -0.01 5.05 16 29 H 0.43 14.45 8.09 -96.75 -0.78 13.67 16 30 H 0.17 2.63 8.05 -2.91 -0.02 2.60 16 31 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 32 H 0.21 0.97 8.06 -2.91 -0.02 0.94 16 33 H 0.07 2.78 6.55 -2.39 -0.02 2.76 16 34 H 0.06 2.62 7.57 -2.38 -0.02 2.60 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -79.62 327.20 -0.50 -80.11 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.31 Total: 21.62 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 4.98 Total: -36.09 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -1.88 Total: -125.46 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: -4.34 Total: -71.85 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.88 Total: 42.25 kcal Atomic # 16 Polarization: 90.88 SS G_CDS: -1.46 Total: 89.42 kcal Total: -79.62 -0.50 -80.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066247935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.899 kcal (2) G-P(sol) polarization free energy of solvation -79.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds