Wall clock time and date at job start Tue Mar 31 2020 14:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99642 * 2 1 4 4 H 1.48504 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47172 * 299.99874 * 3 2 1 6 6 H 1.48501 * 109.47345 * 60.00197 * 3 2 1 7 7 C 1.38807 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 148.51422 * 7 2 1 9 9 N 1.36944 * 120.00048 * 328.51850 * 7 2 1 10 10 C 1.46500 * 119.99878 * 155.46008 * 9 7 2 11 11 C 1.52994 * 117.50018 * 2.84269 * 10 9 7 12 12 C 1.53001 * 60.00344 * 252.51109 * 11 10 9 13 13 S 1.65600 * 119.99997 * 335.18340 * 9 7 2 14 14 O 1.42094 * 106.40124 * 203.53820 * 13 9 7 15 15 O 1.42101 * 106.40166 * 336.46439 * 13 9 7 16 16 C 1.76200 * 107.21556 * 89.99745 * 13 9 7 17 17 C 1.32580 * 119.99656 * 115.00076 * 16 13 9 18 18 C 1.47797 * 120.00087 * 179.97438 * 17 16 13 19 19 C 1.39545 * 120.14512 * 359.72117 * 18 17 16 20 20 C 1.37959 * 119.86750 * 179.74503 * 19 18 17 21 21 C 1.38375 * 120.16528 * 0.53324 * 20 19 18 22 22 C 1.38296 * 120.30651 * 359.74635 * 21 20 19 23 23 C 1.38126 * 120.12143 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 120.08183 * 180.02562 * 23 22 21 25 25 H 0.97001 * 120.00244 * 355.93326 * 1 2 3 26 26 H 1.08995 * 115.54992 * 148.55738 * 10 9 7 27 27 H 1.08998 * 117.50130 * 0.02562 * 11 10 9 28 28 H 1.09004 * 117.49742 * 145.02026 * 11 10 9 29 29 H 1.08995 * 117.49849 * 252.51072 * 12 11 10 30 30 H 1.09004 * 117.51333 * 107.47976 * 12 11 10 31 31 H 1.08000 * 120.00805 * 294.99947 * 16 13 9 32 32 H 1.07997 * 120.00165 * 0.02562 * 17 16 13 33 33 H 1.08004 * 120.06764 * 0.02562 * 19 18 17 34 34 H 1.07990 * 119.91573 * 180.25947 * 20 19 18 35 35 H 1.08002 * 119.84620 * 179.76300 * 21 20 19 36 36 H 1.07988 * 119.93946 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 2.9711 -1.2711 -0.4879 9 7 1.4768 -2.3005 0.6204 10 6 1.8792 -3.6454 0.2015 11 6 2.9479 -3.7560 -0.8877 12 6 1.4903 -4.0919 -1.2094 13 16 0.3821 -2.1084 1.8480 14 8 0.4385 -3.2965 2.6254 15 8 0.6088 -0.8140 2.3888 16 6 -1.2202 -2.0681 1.1162 17 6 -2.0931 -3.0310 1.3785 18 6 -3.4374 -2.9970 0.7652 19 6 -3.7931 -1.9498 -0.0857 20 6 -5.0477 -1.9265 -0.6593 21 6 -5.9568 -2.9326 -0.3840 22 6 -5.6137 -3.9708 0.4629 23 6 -4.3590 -4.0093 1.0392 24 17 -3.9292 -5.3132 2.1016 25 1 -0.4850 0.8379 0.0596 26 1 1.8799 -4.4017 0.9863 27 1 3.3520 -2.8281 -1.2924 28 1 3.6522 -4.5852 -0.8194 29 1 1.2356 -5.1420 -1.3527 30 1 0.9349 -3.3850 -1.8258 31 1 -1.4915 -1.2591 0.4541 32 1 -1.8221 -3.8398 2.0409 33 1 -3.0862 -1.1614 -0.2985 34 1 -5.3223 -1.1186 -1.3212 35 1 -6.9389 -2.9073 -0.8328 36 1 -6.3280 -4.7527 0.6739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066914588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:29 Heat of formation + Delta-G solvation = 10.103511 kcal Electronic energy + Delta-G solvation = -23588.693961 eV Core-core repulsion = 19999.951533 eV Total energy + Delta-G solvation = -3588.742429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -39.27795 -37.23974 -36.39770 -36.12347 -34.59131 -34.05726 -33.26589 -30.73652 -30.57174 -29.29261 -24.98642 -23.65150 -22.47419 -21.70103 -20.76378 -19.86215 -18.99040 -17.36550 -16.89996 -16.18837 -16.05472 -15.34247 -15.03081 -14.64123 -14.21993 -14.06420 -13.81064 -13.70774 -13.58414 -13.40014 -12.33419 -12.09454 -11.83779 -11.65002 -11.52420 -11.44347 -11.11193 -10.96391 -10.91821 -10.80734 -10.74667 -10.72894 -10.57519 -10.34428 -10.19800 -9.99715 -9.67813 -9.52858 -8.86526 -8.81497 -8.20078 -7.74263 -6.46490 -3.90884 0.77004 1.24070 1.78156 2.16500 2.50797 3.28631 3.41212 3.43626 3.79874 4.14729 4.48894 4.60049 4.69643 4.79157 4.88552 4.98973 5.19314 5.29926 5.37743 5.65306 5.66489 5.67882 5.77583 5.81605 5.94027 6.01347 6.16965 6.24555 6.28863 6.30057 6.47689 6.64206 6.79386 6.88657 6.92682 7.20128 7.34307 7.64961 8.36494 8.96568 9.37116 10.63793 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.004902 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.796920 B = 5710.727417 C = 6472.945641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.044 3.956 3 Si 0.928 3.072 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.317 4.317 8 H 0.098 0.902 9 N -0.832 5.832 10 C 0.080 3.920 11 C -0.173 4.173 12 C -0.205 4.205 13 S 2.702 3.298 14 O -1.010 7.010 15 O -0.950 6.950 16 C -0.658 4.658 17 C -0.042 4.042 18 C -0.048 4.048 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.026 4.026 24 Cl -0.067 7.067 25 H 0.275 0.725 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.202 0.798 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -6.389 -2.315 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.159 4.159 3 Si 0.755 3.245 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.445 4.445 8 H 0.115 0.885 9 N -0.660 5.660 10 C -0.028 4.028 11 C -0.212 4.212 12 C -0.245 4.245 13 S 2.794 3.206 14 O -1.000 7.000 15 O -0.940 6.940 16 C -0.763 4.763 17 C -0.062 4.062 18 C -0.050 4.050 19 C -0.103 4.103 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.053 4.053 24 Cl -0.038 7.038 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.218 0.782 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.806 -6.265 -1.360 10.892 hybrid contribution -0.345 0.630 -0.727 1.022 sum -9.151 -5.635 -2.087 10.948 Atomic orbital electron populations 1.69679 1.06213 1.29034 1.48832 1.25029 0.95141 1.00221 0.95532 0.85887 0.79609 0.81590 0.77463 1.19589 1.21517 1.20121 1.18984 1.02103 0.85633 1.37776 0.88452 1.52836 1.54913 1.07373 1.50860 1.21533 1.03294 0.87123 0.90891 1.23052 0.91655 1.02862 1.03677 1.23308 0.98448 1.00661 1.02109 1.01218 0.73995 0.72373 0.73058 1.93440 1.87785 1.50287 1.68502 1.93481 1.84228 1.39584 1.76744 1.35370 1.22161 1.06223 1.12512 1.21923 0.91048 0.97454 0.95749 1.19169 0.94065 0.93903 0.97850 1.21629 0.96727 0.97524 0.94437 1.21231 0.93582 0.98942 0.99861 1.21149 0.99782 0.94021 0.97926 1.20935 0.94745 0.99751 0.98168 1.21127 0.95327 0.91550 0.97298 1.98364 1.93361 1.47703 1.64330 0.91428 0.86147 0.87673 0.89690 0.89891 0.88408 0.78191 0.84901 0.83526 0.85247 0.85288 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.78 8.49 55.49 0.47 -22.31 16 2 C 0.04 1.12 3.72 -17.43 -0.06 1.06 16 3 Si 0.93 21.16 29.66 -169.99 -5.04 16.12 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.32 -7.96 8.74 -15.06 -0.13 -8.09 16 8 H 0.10 2.35 6.18 -52.49 -0.32 2.02 16 9 N -0.83 -19.80 3.22 -53.43 -0.17 -19.97 16 10 C 0.08 1.64 6.31 -67.93 -0.43 1.21 16 11 C -0.17 -3.06 9.80 -26.73 -0.26 -3.32 16 12 C -0.21 -3.71 10.36 -26.73 -0.28 -3.99 16 13 S 2.70 65.71 5.14 -107.50 -0.55 65.16 16 14 O -1.01 -24.49 15.72 -57.17 -0.90 -25.39 16 15 O -0.95 -25.97 15.07 -57.17 -0.86 -26.83 16 16 C -0.66 -14.45 8.77 28.83 0.25 -14.20 16 17 C -0.04 -0.82 9.02 -37.58 -0.34 -1.16 16 18 C -0.05 -0.82 5.87 -104.98 -0.62 -1.43 16 19 C -0.09 -1.35 9.40 -39.20 -0.37 -1.72 16 20 C -0.12 -1.48 10.03 -39.63 -0.40 -1.88 16 21 C -0.11 -1.23 10.04 -39.51 -0.40 -1.63 16 22 C -0.12 -1.43 9.82 -39.60 -0.39 -1.82 16 23 C -0.03 -0.39 6.35 -39.11 -0.25 -0.64 16 24 Cl -0.07 -0.96 27.42 -51.86 -1.42 -2.38 16 25 H 0.28 6.74 8.32 -40.82 -0.34 6.40 16 26 H 0.12 2.32 7.47 -51.93 -0.39 1.93 16 27 H 0.11 1.96 6.18 -51.93 -0.32 1.64 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 31 H 0.20 4.49 3.70 -52.49 -0.19 4.30 16 32 H 0.13 2.59 6.14 -52.49 -0.32 2.27 16 33 H 0.15 2.46 6.17 -52.48 -0.32 2.13 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -29.02 327.03 -10.76 -39.78 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.54 Total: 8.50 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: -3.67 Total: -37.60 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.30 Total: -42.28 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -1.76 Total: -52.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.04 Total: 16.12 kcal Atomic # 16 Polarization: 65.71 SS G_CDS: -0.55 Total: 65.16 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.42 Total: -2.38 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.02 -10.76 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066914588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.880 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds