Wall clock time and date at job start Tue Mar 31 2020 14:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99642 * 2 1 4 4 H 1.48504 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47172 * 299.99874 * 3 2 1 6 6 H 1.48501 * 109.47345 * 60.00197 * 3 2 1 7 7 C 1.38807 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 148.51422 * 7 2 1 9 9 N 1.36944 * 120.00048 * 328.51850 * 7 2 1 10 10 C 1.46500 * 119.99878 * 155.46008 * 9 7 2 11 11 C 1.52994 * 117.50018 * 2.84269 * 10 9 7 12 12 C 1.53001 * 60.00344 * 252.51109 * 11 10 9 13 13 S 1.65600 * 119.99997 * 335.18340 * 9 7 2 14 14 O 1.42094 * 106.40124 * 203.53820 * 13 9 7 15 15 O 1.42101 * 106.40166 * 336.46439 * 13 9 7 16 16 C 1.76200 * 107.21556 * 89.99745 * 13 9 7 17 17 C 1.32580 * 119.99656 * 115.00076 * 16 13 9 18 18 C 1.47797 * 120.00087 * 179.97438 * 17 16 13 19 19 C 1.39545 * 120.14512 * 359.72117 * 18 17 16 20 20 C 1.37959 * 119.86750 * 179.74503 * 19 18 17 21 21 C 1.38375 * 120.16528 * 0.53324 * 20 19 18 22 22 C 1.38296 * 120.30651 * 359.74635 * 21 20 19 23 23 C 1.38126 * 120.12143 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 120.08183 * 180.02562 * 23 22 21 25 25 H 0.97001 * 120.00244 * 355.93326 * 1 2 3 26 26 H 1.08995 * 115.54992 * 148.55738 * 10 9 7 27 27 H 1.08998 * 117.50130 * 0.02562 * 11 10 9 28 28 H 1.09004 * 117.49742 * 145.02026 * 11 10 9 29 29 H 1.08995 * 117.49849 * 252.51072 * 12 11 10 30 30 H 1.09004 * 117.51333 * 107.47976 * 12 11 10 31 31 H 1.08000 * 120.00805 * 294.99947 * 16 13 9 32 32 H 1.07997 * 120.00165 * 0.02562 * 17 16 13 33 33 H 1.08004 * 120.06764 * 0.02562 * 19 18 17 34 34 H 1.07990 * 119.91573 * 180.25947 * 20 19 18 35 35 H 1.08002 * 119.84620 * 179.76300 * 21 20 19 36 36 H 1.07988 * 119.93946 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 2.9711 -1.2711 -0.4879 9 7 1.4768 -2.3005 0.6204 10 6 1.8792 -3.6454 0.2015 11 6 2.9479 -3.7560 -0.8877 12 6 1.4903 -4.0919 -1.2094 13 16 0.3821 -2.1084 1.8480 14 8 0.4385 -3.2965 2.6254 15 8 0.6088 -0.8140 2.3888 16 6 -1.2202 -2.0681 1.1162 17 6 -2.0931 -3.0310 1.3785 18 6 -3.4374 -2.9970 0.7652 19 6 -3.7931 -1.9498 -0.0857 20 6 -5.0477 -1.9265 -0.6593 21 6 -5.9568 -2.9326 -0.3840 22 6 -5.6137 -3.9708 0.4629 23 6 -4.3590 -4.0093 1.0392 24 17 -3.9292 -5.3132 2.1016 25 1 -0.4850 0.8379 0.0596 26 1 1.8799 -4.4017 0.9863 27 1 3.3520 -2.8281 -1.2924 28 1 3.6522 -4.5852 -0.8194 29 1 1.2356 -5.1420 -1.3527 30 1 0.9349 -3.3850 -1.8258 31 1 -1.4915 -1.2591 0.4541 32 1 -1.8221 -3.8398 2.0409 33 1 -3.0862 -1.1614 -0.2985 34 1 -5.3223 -1.1186 -1.3212 35 1 -6.9389 -2.9073 -0.8328 36 1 -6.3280 -4.7527 0.6739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066914588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:28 Heat of formation + Delta-G solvation = -6.246679 kcal Electronic energy + Delta-G solvation = -23589.402959 eV Core-core repulsion = 19999.951533 eV Total energy + Delta-G solvation = -3589.451426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.39299 -38.84930 -38.04091 -37.52312 -36.53524 -35.49460 -35.02099 -32.37583 -31.79900 -30.58359 -26.83801 -24.93460 -23.58201 -23.15170 -22.35414 -21.33054 -20.77994 -18.92302 -18.44531 -17.74374 -17.67432 -16.84500 -16.46675 -16.17863 -15.93865 -15.57913 -15.37601 -14.84270 -14.78746 -14.73177 -14.13192 -13.68022 -13.42422 -13.17553 -12.91571 -12.88169 -12.75792 -12.65326 -12.53549 -12.52753 -12.30274 -12.23818 -11.98989 -11.93377 -11.80709 -11.64429 -11.35100 -11.06449 -10.64928 -9.89555 -9.57913 -9.44618 -8.35881 -5.82928 -0.52832 -0.01129 0.18180 1.03891 1.10863 1.44346 1.56083 1.61003 2.32677 2.63382 2.71903 2.91240 3.05904 3.34950 3.65922 3.67546 3.93496 3.99694 4.16423 4.25981 4.29964 4.31970 4.35228 4.41959 4.60532 4.65216 4.89685 4.90337 5.01727 5.17416 5.21623 5.31283 5.41512 5.47421 5.57266 5.66376 5.76348 5.82845 6.44515 7.11467 7.46364 8.72231 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.004902 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.796920 B = 5710.727417 C = 6472.945641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.294 1.294 7 C -0.325 4.325 8 H 0.103 0.897 9 N -0.843 5.843 10 C 0.045 3.955 11 C -0.154 4.154 12 C -0.192 4.192 13 S 2.698 3.302 14 O -1.022 7.022 15 O -0.994 6.994 16 C -0.686 4.686 17 C -0.014 4.014 18 C -0.087 4.087 19 C -0.099 4.099 20 C -0.116 4.116 21 C -0.086 4.086 22 C -0.113 4.113 23 C -0.032 4.032 24 Cl -0.068 7.068 25 H 0.273 0.727 26 H 0.127 0.873 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.195 0.805 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 -7.778 -3.924 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.221 1.221 7 C -0.454 4.454 8 H 0.120 0.880 9 N -0.672 5.672 10 C -0.063 4.063 11 C -0.193 4.193 12 C -0.232 4.232 13 S 2.795 3.205 14 O -1.012 7.012 15 O -0.984 6.984 16 C -0.794 4.794 17 C -0.034 4.034 18 C -0.090 4.090 19 C -0.118 4.118 20 C -0.134 4.134 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.058 4.058 24 Cl -0.039 7.039 25 H 0.083 0.917 26 H 0.145 0.855 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.212 0.788 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.175 0.825 35 H 0.193 0.807 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.845 -7.672 -2.968 13.612 hybrid contribution 0.094 0.937 -0.242 0.972 sum -10.751 -6.735 -3.210 13.087 Atomic orbital electron populations 1.69778 1.06701 1.29091 1.49100 1.25713 0.95924 1.02338 0.96086 0.85277 0.79444 0.79135 0.76925 1.18394 1.20110 1.22130 1.19176 1.02480 0.86546 1.37159 0.87969 1.52602 1.55922 1.08515 1.50199 1.21802 1.06340 0.85813 0.92351 1.23147 0.91825 1.03517 1.00841 1.23292 0.98692 1.01775 0.99428 1.00947 0.74932 0.71415 0.73232 1.93400 1.88284 1.50173 1.69366 1.93409 1.85327 1.41495 1.78123 1.34744 1.21283 1.08116 1.15247 1.22115 0.92111 0.95594 0.93577 1.19094 0.93402 0.96223 1.00254 1.21628 0.98118 0.96883 0.95140 1.21579 0.92215 1.00199 0.99417 1.21703 1.00968 0.91970 0.95750 1.21385 0.93826 1.00750 0.97181 1.21314 0.96072 0.90948 0.97496 1.98363 1.93536 1.47565 1.64454 0.91730 0.85529 0.88891 0.86045 0.86776 0.90533 0.78808 0.85176 0.85635 0.82485 0.80704 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.87 8.49 21.65 0.18 -47.68 16 2 C 0.00 0.03 3.72 84.86 0.32 0.34 16 3 Si 0.97 44.06 29.66 68.60 2.03 46.10 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.33 -16.74 8.74 84.03 0.73 -16.00 16 8 H 0.10 5.00 6.18 -2.91 -0.02 4.99 16 9 N -0.84 -41.37 3.22 -322.94 -1.04 -42.41 16 10 C 0.04 1.83 6.31 44.99 0.28 2.11 16 11 C -0.15 -5.22 9.80 30.59 0.30 -4.92 16 12 C -0.19 -6.76 10.36 30.60 0.32 -6.45 16 13 S 2.70 137.43 5.14 -56.49 -0.29 137.14 16 14 O -1.02 -51.52 15.72 -128.00 -2.01 -53.53 16 15 O -0.99 -57.26 15.07 -128.00 -1.93 -59.19 16 16 C -0.69 -31.62 8.77 66.67 0.58 -31.03 16 17 C -0.01 -0.55 9.02 23.65 0.21 -0.34 16 18 C -0.09 -2.98 5.87 -20.10 -0.12 -3.10 16 19 C -0.10 -3.11 9.40 22.52 0.21 -2.90 16 20 C -0.12 -2.56 10.03 22.24 0.22 -2.34 16 21 C -0.09 -1.49 10.04 22.32 0.22 -1.27 16 22 C -0.11 -2.29 9.82 22.26 0.22 -2.08 16 23 C -0.03 -0.89 6.35 22.58 0.14 -0.74 16 24 Cl -0.07 -1.88 27.42 -2.72 -0.07 -1.95 16 25 H 0.27 13.96 8.32 -92.71 -0.77 13.19 16 26 H 0.13 4.90 7.47 -2.39 -0.02 4.88 16 27 H 0.09 3.39 6.18 -2.39 -0.01 3.38 16 28 H 0.12 3.20 8.14 -2.38 -0.02 3.18 16 29 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16 31 H 0.20 9.25 3.70 -2.91 -0.01 9.24 16 32 H 0.13 5.24 6.14 -2.91 -0.02 5.22 16 33 H 0.13 4.41 6.17 -2.91 -0.02 4.39 16 34 H 0.16 2.56 8.06 -2.92 -0.02 2.54 16 35 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.16 2.30 8.06 -2.92 -0.02 2.28 16 Total: -1.00 -65.99 327.03 1.65 -64.34 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 1.12 Total: 25.89 kcal Atomic # 6 Polarization: -72.35 SS G_CDS: 3.65 Total: -68.70 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -0.86 Total: -90.09 kcal Atomic # 8 Polarization: -108.78 SS G_CDS: -3.94 Total: -112.72 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 137.43 SS G_CDS: -0.29 Total: 137.14 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.07 Total: -1.95 kcal Total: -65.99 1.65 -64.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066914588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.092 kcal (2) G-P(sol) polarization free energy of solvation -65.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds