Wall clock time and date at job start Tue Mar 31 2020 14:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48496 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46920 * 300.00068 * 3 2 1 6 6 H 1.48501 * 109.46951 * 59.99712 * 3 2 1 7 7 C 1.37881 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99487 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47186 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46995 * 179.97438 * 11 10 9 13 13 S 1.65597 * 120.00096 * 164.99797 * 12 11 10 14 14 O 1.42102 * 106.40137 * 311.46600 * 13 12 11 15 15 O 1.42095 * 106.40348 * 178.54278 * 13 12 11 16 16 C 1.76199 * 107.21739 * 65.00036 * 13 12 11 17 17 C 1.35510 * 120.04919 * 115.02173 * 16 13 12 18 18 C 1.39490 * 121.58073 * 179.70857 * 17 16 13 19 19 C 1.35508 * 121.58505 * 0.56786 * 18 17 16 20 20 C 1.41763 * 119.89801 * 359.43859 * 19 18 17 21 21 N 1.32331 * 131.00774 * 180.27318 * 20 19 18 22 22 S 1.55542 * 109.42052 * 180.02562 * 21 20 19 23 23 N 1.55537 * 100.20494 * 0.02562 * 22 21 20 24 24 C 1.32334 * 109.42132 * 0.02562 * 23 22 21 25 25 H 0.96997 * 119.99834 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.46881 * 59.99973 * 9 7 2 27 27 H 1.09001 * 109.47103 * 300.00091 * 9 7 2 28 28 H 1.09002 * 109.46887 * 59.99920 * 10 9 7 29 29 H 1.09001 * 109.46775 * 299.99884 * 10 9 7 30 30 H 1.08994 * 109.47008 * 59.99567 * 11 10 9 31 31 H 1.08993 * 109.46828 * 299.99748 * 11 10 9 32 32 H 0.96995 * 119.99988 * 345.00357 * 12 11 10 33 33 H 1.08001 * 119.20635 * 359.97438 * 17 16 13 34 34 H 1.08000 * 119.21394 * 180.31519 * 18 17 16 35 35 H 1.08002 * 120.05502 * 179.72124 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9872 -0.0012 12 7 2.4321 -6.1007 -0.0018 13 16 1.9173 -7.6304 0.3687 14 8 1.1543 -7.5189 1.5622 15 8 3.0529 -8.4761 0.2483 16 6 0.7936 -8.1231 -0.8959 17 6 1.1048 -9.1566 -1.7152 18 6 0.2365 -9.5772 -2.7227 19 6 -0.9531 -8.9644 -2.9359 20 6 -1.3441 -7.8758 -2.1164 21 7 -2.4386 -7.1320 -2.1246 22 16 -2.3473 -6.0651 -0.9965 23 7 -0.9567 -6.4177 -0.3956 24 6 -0.4366 -7.4379 -1.0588 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8718 -3.6044 -0.8906 30 1 0.8538 -5.0446 -0.8913 31 1 0.8533 -5.0451 0.8886 32 1 3.3640 -5.9419 -0.2191 33 1 2.0458 -9.6698 -1.5822 34 1 0.5210 -10.4087 -3.3505 35 1 -1.6044 -9.3077 -3.7261 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940744.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:19 Heat of formation + Delta-G solvation = -30.064598 kcal Electronic energy + Delta-G solvation = -23050.723761 eV Core-core repulsion = 19494.575970 eV Total energy + Delta-G solvation = -3556.147791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.04471 -38.47054 -37.53420 -37.42528 -36.98516 -35.25773 -35.03567 -32.66493 -31.63057 -28.72464 -28.23006 -24.80876 -23.86891 -23.79043 -22.25999 -20.90174 -20.23588 -18.88112 -18.69280 -18.52259 -17.97489 -17.35860 -16.95996 -16.70806 -16.46908 -16.11492 -16.00158 -15.56299 -14.32721 -14.11416 -13.98691 -13.77477 -13.56472 -13.33832 -13.23575 -13.17927 -13.13308 -13.11810 -12.87406 -12.77803 -12.59871 -12.51776 -12.31116 -11.95447 -11.75793 -11.51996 -11.41896 -11.14445 -10.55262 -10.50190 -9.94185 -9.87600 -8.19273 -6.29744 -1.43251 -0.64814 0.22354 0.31559 0.33708 0.62861 1.40741 1.41635 1.54386 1.88358 2.24370 2.41973 2.61782 2.97495 3.14409 3.36405 3.76338 3.81716 3.89673 4.06957 4.09815 4.23273 4.41919 4.48301 4.65441 4.67114 4.95306 4.97777 5.05365 5.16622 5.17161 5.21915 5.52554 5.67384 5.72197 5.84709 6.08025 6.24636 6.86297 7.39251 8.92842 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.003857 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.565540 B = 7258.351214 C = 8519.115676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.107 4.107 11 C 0.140 3.860 12 N -1.106 6.106 13 S 2.714 3.286 14 O -0.985 6.985 15 O -0.971 6.971 16 C -0.660 4.660 17 C 0.054 3.946 18 C -0.115 4.115 19 C -0.002 4.002 20 C 0.043 3.957 21 N -0.598 5.598 22 S 0.857 5.143 23 N -0.634 5.634 24 C 0.119 3.881 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.007 1.007 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.427 0.573 33 H 0.184 0.816 34 H 0.201 0.799 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -21.894 -8.457 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.146 4.146 11 C 0.014 3.986 12 N -0.868 5.868 13 S 2.804 3.196 14 O -0.975 6.975 15 O -0.961 6.961 16 C -0.755 4.755 17 C 0.027 3.973 18 C -0.140 4.140 19 C -0.027 4.027 20 C -0.116 4.116 21 N -0.451 5.451 22 S 0.905 5.095 23 N -0.484 5.484 24 C -0.041 4.041 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.012 0.988 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.264 0.736 33 H 0.202 0.798 34 H 0.218 0.782 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.834 -20.628 -7.046 21.981 hybrid contribution 1.017 0.278 -0.824 1.338 sum -1.817 -20.350 -7.870 21.895 Atomic orbital electron populations 1.70092 1.07699 1.27678 1.51626 1.25943 0.95769 1.03210 0.94748 0.85419 0.79120 0.78903 0.77714 1.18620 1.20360 1.20546 1.21698 0.93620 0.92178 1.50517 0.92022 1.18933 0.94348 0.92681 0.95179 1.21688 0.98616 0.92448 1.01848 1.21201 0.90487 0.85650 1.01282 1.55219 1.19526 1.23675 1.88346 1.01036 0.72787 0.71996 0.73751 1.93559 1.73012 1.86057 1.44840 1.93550 1.49492 1.65685 1.87368 1.29916 1.09953 1.10905 1.24680 1.21419 0.99738 0.88362 0.87736 1.21461 0.92477 1.01812 0.98207 1.21150 0.97040 0.88778 0.95715 1.21788 0.89306 1.00729 0.99805 1.72196 1.28426 1.15309 1.29146 1.78711 1.05027 1.21206 1.04551 1.72275 1.19450 1.21682 1.35026 1.20572 0.97235 0.92454 0.93812 0.92768 0.98565 0.98820 0.92089 0.91466 0.92773 0.91639 0.73646 0.79843 0.78179 0.80419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -30.62 9.11 25.60 0.23 -30.38 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.11 -4.36 5.29 30.60 0.16 -4.20 16 11 C 0.14 5.07 4.76 86.38 0.41 5.48 16 12 N -1.11 -32.29 6.00 -187.50 -1.12 -33.42 16 13 S 2.71 78.76 5.66 -56.49 -0.32 78.44 16 14 O -0.98 -36.84 17.42 -128.00 -2.23 -39.07 16 15 O -0.97 -27.38 16.91 -128.00 -2.16 -29.54 16 16 C -0.66 -16.31 5.91 22.51 0.13 -16.18 16 17 C 0.05 0.83 9.43 21.94 0.21 1.04 16 18 C -0.11 -1.11 9.89 21.94 0.22 -0.90 16 19 C 0.00 -0.03 10.09 22.51 0.23 0.20 16 20 C 0.04 1.03 7.16 41.97 0.30 1.33 16 21 N -0.60 -15.12 11.44 -72.83 -0.83 -15.95 16 22 S 0.86 22.07 23.60 -56.49 -1.33 20.73 16 23 N -0.63 -20.27 8.68 -72.84 -0.63 -20.91 16 24 C 0.12 3.38 6.32 41.97 0.27 3.65 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 26 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 1.95 6.63 -2.39 -0.02 1.93 16 31 H 0.07 2.62 7.53 -2.39 -0.02 2.60 16 32 H 0.43 10.24 8.65 -96.75 -0.84 9.40 16 33 H 0.18 1.85 7.22 -2.91 -0.02 1.83 16 34 H 0.20 -0.08 8.06 -2.91 -0.02 -0.10 16 35 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -79.55 327.02 -3.25 -82.79 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 0.31 Total: 4.52 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 2.77 Total: -37.89 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -2.30 Total: -125.99 kcal Atomic # 8 Polarization: -64.22 SS G_CDS: -4.39 Total: -68.61 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 100.82 SS G_CDS: -1.65 Total: 99.17 kcal Total: -79.55 -3.25 -82.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940744.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.728 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds