Wall clock time and date at job start Tue Mar 31 2020 14:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86806 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47013 * 240.00529 * 3 2 1 5 5 H 1.48504 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46873 * 120.00037 * 3 2 1 7 7 C 1.39040 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00521 * 179.97438 * 7 2 1 9 9 N 1.36867 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00297 * 180.02562 * 9 7 2 11 11 O 1.21595 * 119.99898 * 359.97438 * 10 9 7 12 12 C 1.47721 * 120.00144 * 180.02562 * 10 9 7 13 13 C 1.39648 * 120.15190 * 359.72064 * 12 10 9 14 14 C 1.37940 * 119.84693 * 180.27682 * 13 12 10 15 15 C 1.50702 * 119.92458 * 180.02562 * 14 13 12 16 16 F 1.39897 * 109.47095 * 269.98002 * 15 14 13 17 17 F 1.39904 * 109.46869 * 29.97495 * 15 14 13 18 18 F 1.39898 * 109.47053 * 149.98046 * 15 14 13 19 19 C 1.38377 * 120.14984 * 359.97438 * 14 13 12 20 20 C 1.38378 * 120.30842 * 0.02562 * 19 14 13 21 21 C 1.50699 * 119.92511 * 180.02562 * 20 19 14 22 22 F 1.39897 * 109.47020 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.46882 * 299.97804 * 21 20 19 24 24 F 1.39898 * 109.46972 * 59.97397 * 21 20 19 25 25 C 1.37931 * 120.14974 * 359.97438 * 20 19 14 26 26 H 0.96997 * 120.00448 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00380 * 0.02562 * 9 7 2 28 28 H 1.07994 * 120.07752 * 0.25514 * 13 12 10 29 29 H 1.08000 * 119.84657 * 179.97438 * 19 14 13 30 30 H 1.07998 * 120.07656 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.1012 1.6966 -1.2126 5 1 1.2824 2.7465 0.0006 6 1 3.1013 1.6965 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3246 -2.3894 -0.0005 10 6 1.9986 -3.5566 -0.0005 11 8 3.2145 -3.5566 -0.0010 12 6 1.2600 -4.8360 -0.0011 13 6 -0.1364 -4.8398 0.0042 14 6 -0.8197 -6.0380 0.0094 15 6 -2.3267 -6.0442 0.0146 16 9 -2.7885 -6.0434 1.3352 17 9 -2.7999 -4.9050 -0.6455 18 9 -2.7906 -7.1897 -0.6409 19 6 -0.1245 -7.2345 0.0089 20 6 1.2593 -7.2381 0.0036 21 6 2.0077 -8.5462 0.0024 22 9 3.3840 -8.2959 -0.0038 23 9 1.6715 -9.2767 1.1472 24 9 1.6620 -9.2801 -1.1373 25 6 1.9552 -6.0472 -0.0017 26 1 -0.4851 0.8400 0.0004 27 1 0.3547 -2.3896 -0.0005 28 1 -0.6802 -3.9067 0.0046 29 1 -0.6644 -8.1699 0.0134 30 1 3.0351 -6.0514 -0.0054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071651049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:50 Heat of formation + Delta-G solvation = -315.330426 kcal Electronic energy + Delta-G solvation = -27658.240033 eV Core-core repulsion = 22395.519133 eV Total energy + Delta-G solvation = -5262.720900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.043 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.24252 -50.20067 -47.74173 -47.71801 -47.70603 -47.64944 -39.91593 -37.84949 -34.39003 -32.79242 -32.02106 -31.21734 -26.31112 -26.22490 -25.55459 -23.30899 -21.86154 -20.22831 -18.90805 -18.67706 -18.58741 -18.50986 -18.30324 -17.90095 -17.02284 -16.41462 -16.08544 -15.18140 -14.88940 -14.64772 -14.55230 -14.46231 -14.34366 -14.12922 -14.09797 -13.97314 -13.91872 -13.88318 -13.84526 -13.83512 -13.80487 -13.20004 -12.88295 -12.70664 -12.58502 -11.91350 -11.75448 -11.45090 -11.28460 -10.65117 -10.50144 -9.85838 -9.59746 -9.15324 -8.80691 -8.33811 -6.80250 -4.10191 0.61386 0.67925 2.44361 2.62817 2.77173 3.10051 3.10465 3.13379 3.52064 3.61327 3.81730 3.95962 4.04152 4.06448 4.28684 4.39465 4.47398 4.67058 4.88886 5.04199 5.05846 5.23140 5.35962 5.65517 5.81971 6.04071 6.23360 6.42642 7.20167 7.69132 8.22429 8.80710 9.12081 9.68511 10.35087 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.004334 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.771146 B = 6458.883758 C = 8401.519257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.026 3.974 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.292 4.292 8 H 0.113 0.887 9 N -0.530 5.530 10 C 0.454 3.546 11 O -0.592 6.592 12 C -0.087 4.087 13 C -0.034 4.034 14 C -0.185 4.185 15 C 0.513 3.487 16 F -0.174 7.174 17 F -0.170 7.170 18 F -0.177 7.177 19 C -0.032 4.032 20 C -0.190 4.190 21 C 0.514 3.486 22 F -0.171 7.171 23 F -0.176 7.176 24 F -0.176 7.176 25 C -0.005 4.005 26 H 0.281 0.719 27 H 0.394 0.606 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 -13.216 0.012 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.179 4.179 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.421 4.421 8 H 0.131 0.869 9 N -0.162 5.162 10 C 0.242 3.758 11 O -0.479 6.479 12 C -0.091 4.091 13 C -0.053 4.053 14 C -0.186 4.186 15 C 0.459 3.541 16 F -0.155 7.155 17 F -0.151 7.151 18 F -0.159 7.159 19 C -0.051 4.051 20 C -0.192 4.192 21 C 0.460 3.540 22 F -0.153 7.153 23 F -0.157 7.157 24 F -0.157 7.157 25 C -0.024 4.024 26 H 0.092 0.908 27 H 0.229 0.771 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.901 -13.002 0.012 13.575 hybrid contribution -0.501 0.559 0.002 0.751 sum -4.402 -12.443 0.014 13.199 Atomic orbital electron populations 1.69566 1.06298 1.29568 1.46079 1.25494 0.95761 1.00496 0.96158 0.85755 0.78861 0.79271 0.79560 1.19371 1.20553 1.19380 1.19906 0.93998 0.81831 1.46377 0.86938 1.41955 1.09592 1.04887 1.59803 1.17343 0.87501 0.82690 0.88256 1.90644 1.12664 1.86412 1.58187 1.20339 0.92298 0.95557 1.00938 1.21437 0.94234 0.97513 0.92154 1.19710 0.91123 0.95549 1.12218 1.18120 0.88227 0.73782 0.73988 1.93238 1.90416 1.96140 1.35740 1.93238 1.90003 1.50939 1.80956 1.93186 1.90449 1.50881 1.81356 1.20508 0.92511 0.97841 0.94279 1.19736 0.94207 0.92539 1.12710 1.18092 0.77429 0.84617 0.73834 1.93201 1.31774 1.94108 1.96186 1.93221 1.92174 1.79494 1.50836 1.93220 1.91938 1.79321 1.51226 1.21287 1.02048 0.89326 0.89758 0.90846 0.77103 0.83383 0.83882 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.74 13.05 55.50 0.72 -21.02 16 2 C 0.03 0.64 5.50 -17.46 -0.10 0.55 16 3 Si 0.94 19.20 29.55 -169.99 -5.02 14.18 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.29 -7.48 9.68 -15.01 -0.15 -7.63 16 8 H 0.11 3.00 7.15 -52.49 -0.38 2.63 16 9 N -0.53 -12.52 5.23 -11.87 -0.06 -12.58 16 10 C 0.45 10.27 7.72 -12.38 -0.10 10.17 16 11 O -0.59 -15.29 15.92 5.28 0.08 -15.21 16 12 C -0.09 -1.56 5.87 -104.97 -0.62 -2.17 16 13 C -0.03 -0.52 8.89 -39.16 -0.35 -0.87 16 14 C -0.18 -2.51 5.45 -104.68 -0.57 -3.08 16 15 C 0.51 6.60 3.36 36.01 0.12 6.72 16 16 F -0.17 -2.28 17.30 2.25 0.04 -2.24 16 17 F -0.17 -2.34 16.45 2.25 0.04 -2.31 16 18 F -0.18 -2.14 16.45 2.25 0.04 -2.10 16 19 C -0.03 -0.40 8.94 -39.48 -0.35 -0.75 16 20 C -0.19 -2.57 5.37 -104.68 -0.56 -3.14 16 21 C 0.51 6.43 3.31 36.01 0.12 6.55 16 22 F -0.17 -2.26 15.96 2.25 0.04 -2.23 16 23 F -0.18 -2.15 17.24 2.25 0.04 -2.11 16 24 F -0.18 -2.15 17.23 2.25 0.04 -2.11 16 25 C 0.00 -0.07 8.98 -39.17 -0.35 -0.42 16 26 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.39 8.75 5.93 -40.82 -0.24 8.51 16 28 H 0.15 2.28 5.94 -52.49 -0.31 1.97 16 29 H 0.14 1.46 7.59 -52.49 -0.40 1.06 16 30 H 0.16 2.54 6.74 -52.49 -0.35 2.19 16 LS Contribution 300.45 15.07 4.53 4.53 Total: -1.00 -26.79 300.45 -3.24 -30.03 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -0.82 Total: 7.24 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -2.90 Total: 5.93 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.66 Total: -33.60 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.08 Total: -15.21 kcal Atomic # 9 Polarization: -13.32 SS G_CDS: 0.23 Total: -13.09 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.79 -3.24 -30.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071651049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -285.304 kcal (2) G-P(sol) polarization free energy of solvation -26.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -312.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -315.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds