Wall clock time and date at job start Tue Mar 31 2020 14:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86806 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47013 * 240.00529 * 3 2 1 5 5 H 1.48504 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46873 * 120.00037 * 3 2 1 7 7 C 1.39040 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00521 * 179.97438 * 7 2 1 9 9 N 1.36867 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00297 * 180.02562 * 9 7 2 11 11 O 1.21595 * 119.99898 * 359.97438 * 10 9 7 12 12 C 1.47721 * 120.00144 * 180.02562 * 10 9 7 13 13 C 1.39648 * 120.15190 * 359.72064 * 12 10 9 14 14 C 1.37940 * 119.84693 * 180.27682 * 13 12 10 15 15 C 1.50702 * 119.92458 * 180.02562 * 14 13 12 16 16 F 1.39897 * 109.47095 * 269.98002 * 15 14 13 17 17 F 1.39904 * 109.46869 * 29.97495 * 15 14 13 18 18 F 1.39898 * 109.47053 * 149.98046 * 15 14 13 19 19 C 1.38377 * 120.14984 * 359.97438 * 14 13 12 20 20 C 1.38378 * 120.30842 * 0.02562 * 19 14 13 21 21 C 1.50699 * 119.92511 * 180.02562 * 20 19 14 22 22 F 1.39897 * 109.47020 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.46882 * 299.97804 * 21 20 19 24 24 F 1.39898 * 109.46972 * 59.97397 * 21 20 19 25 25 C 1.37931 * 120.14974 * 359.97438 * 20 19 14 26 26 H 0.96997 * 120.00448 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00380 * 0.02562 * 9 7 2 28 28 H 1.07994 * 120.07752 * 0.25514 * 13 12 10 29 29 H 1.08000 * 119.84657 * 179.97438 * 19 14 13 30 30 H 1.07998 * 120.07656 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.1012 1.6966 -1.2126 5 1 1.2824 2.7465 0.0006 6 1 3.1013 1.6965 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3246 -2.3894 -0.0005 10 6 1.9986 -3.5566 -0.0005 11 8 3.2145 -3.5566 -0.0010 12 6 1.2600 -4.8360 -0.0011 13 6 -0.1364 -4.8398 0.0042 14 6 -0.8197 -6.0380 0.0094 15 6 -2.3267 -6.0442 0.0146 16 9 -2.7885 -6.0434 1.3352 17 9 -2.7999 -4.9050 -0.6455 18 9 -2.7906 -7.1897 -0.6409 19 6 -0.1245 -7.2345 0.0089 20 6 1.2593 -7.2381 0.0036 21 6 2.0077 -8.5462 0.0024 22 9 3.3840 -8.2959 -0.0038 23 9 1.6715 -9.2767 1.1472 24 9 1.6620 -9.2801 -1.1373 25 6 1.9552 -6.0472 -0.0017 26 1 -0.4851 0.8400 0.0004 27 1 0.3547 -2.3896 -0.0005 28 1 -0.6802 -3.9067 0.0046 29 1 -0.6644 -8.1699 0.0134 30 1 3.0351 -6.0514 -0.0054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071651049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:49 Heat of formation + Delta-G solvation = -329.729157 kcal Electronic energy + Delta-G solvation = -27658.864408 eV Core-core repulsion = 22395.519133 eV Total energy + Delta-G solvation = -5263.345275 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.043 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.26697 -51.24260 -48.77485 -48.75195 -48.70389 -48.70046 -41.33691 -39.51090 -36.23722 -34.11088 -33.55087 -32.77818 -27.66373 -27.37588 -27.06282 -24.78331 -23.00429 -21.66255 -20.51945 -19.80880 -19.60868 -19.60288 -19.53836 -19.16405 -18.17166 -17.67670 -17.60679 -16.70208 -16.44524 -15.80655 -15.71306 -15.58079 -15.56753 -15.49906 -15.28396 -15.13682 -15.13551 -14.94644 -14.87677 -14.85197 -14.84654 -14.80309 -14.06758 -13.99477 -13.82371 -13.60165 -13.07301 -12.97637 -12.69026 -12.46043 -12.13791 -11.64857 -10.80519 -10.69407 -10.51393 -10.18311 -8.61834 -6.05997 -0.62789 -0.55555 1.32021 1.35100 1.42972 1.53336 1.55030 1.58698 2.21847 2.39030 2.45792 2.52398 2.66363 3.00741 3.05890 3.17208 3.25432 3.33816 3.48302 3.65733 3.75965 3.92208 4.08859 4.28493 4.58578 4.70401 4.89190 5.11613 5.30537 5.83212 6.39025 6.94650 7.30739 7.86696 8.54175 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.004334 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.771146 B = 6458.883758 C = 8401.519257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.004 4.004 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.090 0.910 9 N -0.542 5.542 10 C 0.459 3.541 11 O -0.628 6.628 12 C -0.111 4.111 13 C -0.021 4.021 14 C -0.184 4.184 15 C 0.522 3.478 16 F -0.173 7.173 17 F -0.176 7.176 18 F -0.167 7.167 19 C -0.003 4.003 20 C -0.187 4.187 21 C 0.524 3.476 22 F -0.176 7.176 23 F -0.170 7.170 24 F -0.169 7.169 25 C 0.001 3.999 26 H 0.285 0.715 27 H 0.398 0.602 28 H 0.147 0.853 29 H 0.179 0.821 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 -15.070 0.012 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.207 4.207 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.108 0.892 9 N -0.175 5.175 10 C 0.248 3.752 11 O -0.518 6.518 12 C -0.114 4.114 13 C -0.041 4.041 14 C -0.185 4.185 15 C 0.467 3.533 16 F -0.154 7.154 17 F -0.157 7.157 18 F -0.149 7.149 19 C -0.021 4.021 20 C -0.188 4.188 21 C 0.469 3.531 22 F -0.157 7.157 23 F -0.151 7.151 24 F -0.151 7.151 25 C -0.019 4.019 26 H 0.095 0.905 27 H 0.234 0.766 28 H 0.165 0.835 29 H 0.197 0.803 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.131 -14.889 0.012 15.748 hybrid contribution -0.173 0.807 0.002 0.826 sum -5.304 -14.082 0.013 15.048 Atomic orbital electron populations 1.69613 1.07072 1.30374 1.47070 1.26195 0.96558 1.02778 0.95150 0.84894 0.77829 0.75860 0.79275 1.19365 1.19254 1.19373 1.19812 0.93336 0.83383 1.49964 0.89212 1.41903 1.09675 1.04794 1.61160 1.18045 0.87316 0.83969 0.85857 1.90599 1.14632 1.87471 1.59065 1.19875 0.93099 0.93818 1.04635 1.21383 0.93216 0.98558 0.90928 1.19753 0.91828 0.95044 1.11891 1.17876 0.87453 0.73903 0.74030 1.93249 1.90320 1.96141 1.35706 1.93238 1.89991 1.51393 1.81085 1.93213 1.90255 1.50231 1.81153 1.20947 0.92099 0.98838 0.90242 1.19778 0.94676 0.92243 1.12110 1.17821 0.77037 0.84062 0.74147 1.93204 1.32165 1.94138 1.96221 1.93242 1.92082 1.79223 1.50539 1.93242 1.91845 1.79049 1.50935 1.21245 1.01924 0.89569 0.89156 0.90474 0.76599 0.83550 0.80322 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.54 13.05 21.68 0.28 -45.26 16 2 C 0.00 -0.20 5.50 84.96 0.47 0.26 16 3 Si 1.00 40.02 29.55 68.60 2.03 42.05 16 4 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.34 -18.03 9.68 84.10 0.81 -17.21 16 8 H 0.09 5.09 7.15 -2.91 -0.02 5.07 16 9 N -0.54 -26.67 5.23 -309.74 -1.62 -28.29 16 10 C 0.46 21.50 7.72 86.75 0.67 22.17 16 11 O -0.63 -33.84 15.92 -4.01 -0.06 -33.90 16 12 C -0.11 -3.94 5.87 -20.09 -0.12 -4.05 16 13 C -0.02 -0.64 8.89 22.54 0.20 -0.44 16 14 C -0.18 -4.47 5.45 -19.90 -0.11 -4.57 16 15 C 0.52 11.84 3.36 71.24 0.24 12.08 16 16 F -0.17 -4.03 17.30 44.97 0.78 -3.25 16 17 F -0.18 -4.48 16.45 44.97 0.74 -3.74 16 18 F -0.17 -3.39 16.45 44.97 0.74 -2.65 16 19 C 0.00 -0.06 8.94 22.34 0.20 0.14 16 20 C -0.19 -4.51 5.37 -19.90 -0.11 -4.62 16 21 C 0.52 11.51 3.31 71.24 0.24 11.75 16 22 F -0.18 -4.30 15.96 44.97 0.72 -3.59 16 23 F -0.17 -3.55 17.24 44.97 0.78 -2.77 16 24 F -0.17 -3.55 17.23 44.97 0.78 -2.77 16 25 C 0.00 0.02 8.98 22.54 0.20 0.22 16 26 H 0.29 13.42 8.31 -92.71 -0.77 12.65 16 27 H 0.40 18.36 5.93 -92.71 -0.55 17.81 16 28 H 0.15 4.47 5.94 -2.91 -0.02 4.45 16 29 H 0.18 2.62 7.59 -2.91 -0.02 2.60 16 30 H 0.15 4.84 6.74 -2.91 -0.02 4.82 16 Total: -1.00 -58.91 300.45 8.57 -50.34 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.72 Total: 18.11 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 2.70 Total: 15.73 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.34 Total: -73.55 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.06 Total: -33.90 kcal Atomic # 9 Polarization: -23.29 SS G_CDS: 4.53 Total: -18.77 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -58.91 8.57 -50.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071651049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -279.388 kcal (2) G-P(sol) polarization free energy of solvation -58.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -338.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -329.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds