Wall clock time and date at job start Tue Mar 31 2020 14:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48503 * 109.47218 * 240.00146 * 3 2 1 5 5 H 1.48496 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46713 * 120.00501 * 3 2 1 7 7 C 1.38802 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 N 1.31281 * 126.48767 * 0.02562 * 14 13 12 16 16 N 1.28517 * 109.86239 * 180.02562 * 15 14 13 17 17 C 1.30296 * 110.07965 * 359.97438 * 16 15 14 18 18 N 1.36542 * 126.48533 * 179.71764 * 14 13 12 19 19 C 1.46497 * 127.13983 * 359.97438 * 18 14 13 20 20 C 1.52994 * 109.47258 * 85.00370 * 19 18 14 21 21 F 1.39902 * 109.47020 * 60.00067 * 20 19 18 22 22 F 1.39899 * 109.47296 * 179.97438 * 20 19 18 23 23 F 1.39902 * 109.47369 * 299.99840 * 20 19 18 24 24 H 0.96996 * 119.99880 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 28 28 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 29 29 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 30 30 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 31 31 H 1.07999 * 126.34339 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47238 * 205.00655 * 19 18 14 33 33 H 1.09004 * 109.47525 * 324.99918 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 16 2.5166 -8.0028 -0.0005 14 6 4.0343 -8.8979 -0.0005 15 7 5.2429 -8.3853 -0.0001 16 7 6.1168 -9.3275 -0.0008 17 6 5.5238 -10.4877 -0.0012 18 7 4.1760 -10.2559 0.0049 19 6 3.1062 -11.2568 0.0123 20 6 2.6438 -11.5197 -1.4222 21 9 3.7203 -11.9933 -2.1798 22 9 1.6226 -12.4759 -1.4151 23 9 2.1659 -10.3306 -1.9834 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7314 0.8895 26 1 3.1245 -3.7314 -0.8905 27 1 1.3704 -5.4846 -0.8897 28 1 1.3709 -5.4841 0.8902 29 1 3.7594 -6.1478 -0.8909 30 1 3.7605 -6.1476 0.8891 31 1 6.0070 -11.4535 -0.0014 32 1 3.4785 -12.1832 0.4496 33 1 2.2675 -10.8878 0.6027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075076479.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:04 Heat of formation + Delta-G solvation = -103.223433 kcal Electronic energy + Delta-G solvation = -22230.382266 eV Core-core repulsion = 18129.205329 eV Total energy + Delta-G solvation = -4101.176936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.038 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.25560 -48.77559 -48.75177 -44.05600 -36.68290 -35.74229 -34.59330 -31.96284 -30.74594 -28.61336 -27.58233 -25.36654 -23.91789 -23.60312 -22.56321 -20.04760 -19.66195 -19.57427 -19.44959 -18.41759 -17.44175 -16.92271 -16.88821 -16.57444 -16.42857 -16.08928 -15.65782 -15.56651 -15.37886 -15.15388 -14.90695 -14.87898 -14.85842 -14.15406 -14.09754 -13.68670 -13.53778 -13.44970 -12.97455 -12.92106 -12.68784 -12.45984 -12.04605 -12.03298 -11.66368 -11.51766 -11.35754 -11.25343 -11.13246 -10.34589 -8.81582 -8.65981 -8.37242 -6.13115 -0.15391 0.31182 0.87165 1.14869 1.32652 1.41242 1.47921 1.56532 1.67227 1.75496 2.28109 2.55594 2.75074 2.97232 3.01201 3.30330 3.44782 3.61207 3.82190 3.91121 3.94392 4.01165 4.13326 4.32335 4.35553 4.61625 4.67762 4.77459 4.99273 5.16983 5.40713 5.49514 6.18560 7.05389 7.40478 8.71864 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.002282 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.298874 B =12267.536101 C =12986.188683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.992 3.008 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.073 0.927 9 S -0.187 6.187 10 C -0.087 4.087 11 C -0.074 4.074 12 C -0.091 4.091 13 S 0.034 5.966 14 C 0.159 3.841 15 N -0.327 5.327 16 N -0.331 5.331 17 C 0.194 3.806 18 N -0.475 5.475 19 C 0.067 3.933 20 C 0.436 3.564 21 F -0.184 7.184 22 F -0.168 7.168 23 F -0.184 7.184 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.277 0.723 32 H 0.199 0.801 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 -30.592 0.992 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.688 4.688 8 H 0.091 0.909 9 S 0.042 5.958 10 C -0.238 4.238 11 C -0.114 4.114 12 C -0.242 4.242 13 S 0.264 5.736 14 C -0.217 4.217 15 N -0.169 5.169 16 N -0.167 5.167 17 C -0.096 4.096 18 N -0.171 5.171 19 C -0.057 4.057 20 C 0.380 3.620 21 F -0.165 7.165 22 F -0.150 7.150 23 F -0.166 7.166 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.292 0.708 32 H 0.216 0.784 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.810 -30.032 0.965 30.430 hybrid contribution 1.887 0.827 -0.439 2.106 sum 6.696 -29.205 0.526 29.968 Atomic orbital electron populations 1.70135 1.07593 1.28638 1.47900 1.26034 0.96030 1.03010 0.93757 0.85099 0.77976 0.76245 0.79323 1.19057 1.19898 1.18966 1.23018 0.94792 0.92051 1.58964 0.90925 1.84553 1.13334 1.00872 1.97057 1.23159 1.00528 0.96569 1.03497 1.20932 0.96014 0.90096 1.04350 1.23556 1.01511 0.91819 1.07288 1.85437 0.96126 1.00060 1.92023 1.27234 1.01956 0.85642 1.06895 1.74715 0.95997 1.24911 1.21324 1.73915 1.26067 0.97428 1.19297 1.27797 0.78812 1.02385 1.00592 1.46488 1.08448 1.04787 1.57383 1.23515 0.93371 0.97009 0.91783 1.21073 0.75750 0.74507 0.90650 1.93226 1.55594 1.88558 1.79164 1.93253 1.60413 1.64450 1.96847 1.93297 1.88654 1.47051 1.87585 0.91917 0.91459 0.91690 0.90213 0.89835 0.88922 0.88460 0.70793 0.78386 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.58 13.22 21.65 0.29 -54.29 16 2 C 0.02 0.96 5.49 84.86 0.47 1.43 16 3 Si 0.99 44.13 29.55 68.60 2.03 46.15 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -31.22 9.50 67.95 0.65 -30.57 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.19 -9.79 21.44 -56.49 -1.21 -11.00 16 10 C -0.09 -3.41 5.67 71.98 0.41 -3.00 16 11 C -0.07 -2.23 5.22 30.59 0.16 -2.07 16 12 C -0.09 -2.36 5.23 71.98 0.38 -1.98 16 13 S 0.03 0.73 20.97 -56.49 -1.18 -0.46 16 14 C 0.16 3.51 7.72 179.55 1.39 4.90 16 15 N -0.33 -9.31 11.60 -56.86 -0.66 -9.97 16 16 N -0.33 -8.29 12.17 -59.32 -0.72 -9.01 16 17 C 0.19 2.66 12.80 179.77 2.30 4.96 16 18 N -0.48 -6.49 2.69 -527.79 -1.42 -7.92 16 19 C 0.07 0.30 6.00 86.38 0.52 0.82 16 20 C 0.44 4.57 3.29 71.98 0.24 4.81 16 21 F -0.18 -2.35 17.24 44.97 0.78 -1.58 16 22 F -0.17 -1.67 17.32 44.97 0.78 -0.89 16 23 F -0.18 -3.24 15.94 44.97 0.72 -2.52 16 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.28 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.20 -1.11 8.14 -2.39 -0.02 -1.13 16 33 H 0.16 0.32 8.02 -2.38 -0.02 0.30 16 Total: -1.00 -78.50 333.57 7.03 -71.47 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.15 Total: 0.73 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 6.50 Total: -20.71 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.52 Total: -81.19 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 2.27 Total: -4.99 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -2.40 Total: -11.46 kcal Total: -78.50 7.03 -71.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075076479.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.758 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds