Wall clock time and date at job start Tue Mar 31 2020 15:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48502 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47127 * 300.00204 * 3 2 1 6 6 H 1.48505 * 109.46945 * 60.00324 * 3 2 1 7 7 C 1.39046 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00137 * 138.08469 * 7 2 1 9 9 N 1.36888 * 119.99541 * 318.08482 * 7 2 1 10 10 C 1.34774 * 119.99757 * 291.67121 * 9 7 2 11 11 O 1.21595 * 120.00822 * 358.07137 * 10 9 7 12 12 C 1.47664 * 119.99678 * 178.06988 * 10 9 7 13 13 C 1.39696 * 120.15602 * 256.19176 * 12 10 9 14 14 C 1.37874 * 119.88485 * 180.02562 * 13 12 10 15 15 C 1.38421 * 120.20282 * 359.97438 * 14 13 12 16 16 C 1.38387 * 120.31520 * 0.02562 * 15 14 13 17 17 Cl 1.73598 * 119.94384 * 180.02562 * 16 15 14 18 18 C 1.38248 * 120.11145 * 359.97438 * 16 15 14 19 19 Cl 1.73599 * 120.10102 * 180.27552 * 18 16 15 20 20 C 1.46497 * 119.99753 * 111.67490 * 9 7 2 21 21 C 1.54269 * 110.03322 * 50.67784 * 20 9 7 22 22 C 1.54966 * 104.16120 * 217.13467 * 21 20 9 23 23 C 1.54893 * 102.77404 * 37.88724 * 22 21 20 24 24 C 1.53871 * 110.03234 * 293.46355 * 20 9 7 25 25 H 0.97000 * 120.00387 * 4.99930 * 1 2 3 26 26 H 1.08003 * 120.05507 * 0.03487 * 13 12 10 27 27 H 1.08001 * 119.89965 * 180.02562 * 14 13 12 28 28 H 1.08001 * 119.84075 * 179.97438 * 15 14 13 29 29 H 1.08997 * 110.01482 * 172.07240 * 20 9 7 30 30 H 1.08999 * 110.48666 * 335.78507 * 21 20 9 31 31 H 1.09006 * 110.48071 * 98.42782 * 21 20 9 32 32 H 1.08997 * 110.71979 * 279.57871 * 22 21 20 33 33 H 1.08998 * 110.92235 * 156.29824 * 22 21 20 34 34 H 1.08997 * 110.48277 * 203.40034 * 23 22 21 35 35 H 1.09000 * 110.59304 * 80.82319 * 23 22 21 36 36 H 1.09007 * 110.03007 * 238.56870 * 24 20 9 37 37 H 1.08999 * 110.03029 * 359.94778 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7077 1.3464 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8889 2.3964 1.2126 7 6 2.0089 -1.2042 -0.0005 8 1 2.8816 -1.3235 -0.6254 9 7 1.5871 -2.2383 0.7910 10 6 1.6814 -2.1423 2.1320 11 8 2.1734 -1.1520 2.6377 12 6 1.1873 -3.2399 2.9873 13 6 -0.0262 -3.1082 3.6668 14 6 -0.4820 -4.1364 4.4643 15 6 0.2587 -5.2986 4.5932 16 6 1.4619 -5.4380 3.9238 17 17 2.3826 -6.9000 4.0918 18 6 1.9313 -4.4153 3.1207 19 17 3.4371 -4.5932 2.2755 20 6 1.0332 -3.4493 0.1803 21 6 1.9861 -3.9725 -0.9142 22 6 1.0387 -4.4993 -2.0215 23 6 -0.1129 -3.4636 -2.0082 24 6 -0.3010 -3.1261 -0.5148 25 1 -0.4851 0.8368 -0.0732 26 1 -0.6062 -2.2027 3.5674 27 1 -1.4203 -4.0350 4.9894 28 1 -0.1037 -6.1002 5.2197 29 1 0.8819 -4.2150 0.9411 30 1 2.6079 -3.1634 -1.2973 31 1 2.6063 -4.7803 -0.5255 32 1 0.6675 -5.4930 -1.7709 33 1 1.5390 -4.5084 -2.9899 34 1 -1.0235 -3.9004 -2.4184 35 1 0.1671 -2.5717 -2.5687 36 1 -1.0996 -3.7358 -0.0920 37 1 -0.5368 -2.0685 -0.3971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:10 Heat of formation + Delta-G solvation = -32.632773 kcal Electronic energy + Delta-G solvation = -24291.602092 eV Core-core repulsion = 20698.962773 eV Total energy + Delta-G solvation = -3592.639319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29461 -39.67328 -38.34789 -37.56472 -37.49152 -35.40182 -33.79762 -32.13377 -31.73172 -29.32277 -28.48510 -27.04491 -24.58116 -23.78642 -21.78787 -21.43451 -20.90475 -19.13803 -17.98040 -17.63867 -17.19463 -16.83219 -16.53859 -16.16379 -15.90455 -15.27020 -15.20695 -15.04267 -14.86320 -14.24588 -14.04071 -13.68016 -13.26969 -13.11908 -12.89870 -12.83984 -12.78590 -12.47996 -12.38499 -12.32085 -12.16918 -12.09292 -11.88912 -11.71966 -11.67113 -11.34173 -11.11567 -10.57974 -10.50407 -9.91862 -9.81001 -9.09114 -8.34365 -6.13454 -0.14428 -0.10933 0.74946 1.11118 1.28624 1.41452 1.51644 1.98205 2.24520 2.38966 2.80616 3.03872 3.63662 3.82827 3.93720 3.98868 4.02624 4.14935 4.25198 4.31621 4.48660 4.59789 4.78279 4.85972 4.90041 4.91486 4.99135 5.06165 5.19998 5.20566 5.26705 5.35408 5.50282 5.52728 5.54310 5.67633 5.97716 6.40711 6.97241 7.02591 7.48069 8.14094 8.56447 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.005686 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.054373 B = 4922.789573 C = 5506.113620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.070 3.930 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.291 1.291 7 C -0.379 4.379 8 H 0.063 0.937 9 N -0.423 5.423 10 C 0.517 3.483 11 O -0.605 6.605 12 C -0.103 4.103 13 C -0.088 4.088 14 C -0.082 4.082 15 C -0.082 4.082 16 C -0.037 4.037 17 Cl -0.041 7.041 18 C -0.028 4.028 19 Cl -0.051 7.051 20 C 0.128 3.872 21 C -0.122 4.122 22 C -0.110 4.110 23 C -0.106 4.106 24 C -0.149 4.149 25 H 0.273 0.727 26 H 0.129 0.871 27 H 0.186 0.814 28 H 0.185 0.815 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 -14.495 4.963 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.142 4.142 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.218 1.218 7 C -0.504 4.504 8 H 0.081 0.919 9 N -0.141 5.141 10 C 0.304 3.696 11 O -0.490 6.490 12 C -0.107 4.107 13 C -0.107 4.107 14 C -0.100 4.100 15 C -0.100 4.100 16 C -0.064 4.064 17 Cl -0.012 7.012 18 C -0.056 4.056 19 Cl -0.022 7.022 20 C 0.025 3.975 21 C -0.161 4.161 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.188 4.188 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.203 0.797 28 H 0.202 0.798 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.922 -14.049 5.139 15.465 hybrid contribution 0.900 1.298 -0.176 1.589 sum -3.022 -12.751 4.963 14.013 Atomic orbital electron populations 1.69955 1.07899 1.28640 1.40065 1.25858 0.94604 1.01820 0.91901 0.85901 0.80464 0.80488 0.77254 1.20081 1.19330 1.21780 1.18394 1.12298 0.91575 1.28173 0.91917 1.43318 1.53646 1.14741 1.02377 1.18818 0.80485 0.86238 0.84015 1.90593 1.49503 1.34499 1.74430 1.20133 0.96938 0.93356 1.00286 1.21443 0.93217 1.00665 0.95409 1.21551 1.01152 0.90810 0.96484 1.21585 0.90812 0.99651 0.97960 1.20820 0.96132 0.88628 1.00870 1.98375 1.73286 1.32927 1.96603 1.20872 0.90648 0.94603 0.99473 1.98385 1.30326 1.97382 1.76119 1.21962 0.93763 0.86846 0.94909 1.22548 0.97930 0.99408 0.96180 1.22415 0.95784 0.98489 0.98052 1.22121 0.98450 0.98045 0.95737 1.22702 0.95719 1.04593 0.95764 0.91731 0.85307 0.79720 0.79786 0.91884 0.92541 0.92103 0.90259 0.90895 0.90905 0.93804 0.92906 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.91 11.60 21.68 0.25 -44.66 16 2 C 0.07 3.82 4.89 84.96 0.42 4.23 16 3 Si 0.93 45.55 29.69 68.60 2.04 47.58 16 4 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 7 C -0.38 -20.75 6.94 84.10 0.58 -20.16 16 8 H 0.06 3.55 7.14 -2.91 -0.02 3.53 16 9 N -0.42 -21.00 2.36 -612.82 -1.45 -22.45 16 10 C 0.52 26.24 5.99 86.73 0.52 26.76 16 11 O -0.61 -36.12 16.78 -4.02 -0.07 -36.19 16 12 C -0.10 -4.10 4.12 -20.07 -0.08 -4.18 16 13 C -0.09 -2.87 9.79 22.54 0.22 -2.65 16 14 C -0.08 -1.75 10.03 22.23 0.22 -1.53 16 15 C -0.08 -1.64 9.82 22.35 0.22 -1.42 16 16 C -0.04 -0.99 6.32 22.31 0.14 -0.85 16 17 Cl -0.04 -0.96 27.95 -2.72 -0.08 -1.04 16 18 C -0.03 -0.96 5.22 22.64 0.12 -0.85 16 19 Cl -0.05 -1.86 26.54 -2.72 -0.07 -1.94 16 20 C 0.13 5.31 2.80 45.72 0.13 5.43 16 21 C -0.12 -4.57 6.39 31.70 0.20 -4.37 16 22 C -0.11 -3.33 6.91 31.91 0.22 -3.11 16 23 C -0.11 -3.63 6.83 31.67 0.22 -3.42 16 24 C -0.15 -6.02 6.34 31.31 0.20 -5.82 16 25 H 0.27 13.83 8.31 -92.71 -0.77 13.05 16 26 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 27 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.06 2.48 5.42 -2.39 -0.01 2.47 16 30 H 0.06 2.41 6.24 -2.39 -0.01 2.40 16 31 H 0.06 2.11 8.04 -2.38 -0.02 2.09 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.09 4.54 5.22 -2.39 -0.01 4.53 16 Total: -1.00 -67.66 333.90 5.05 -62.61 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.10 Total: 8.00 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.32 Total: -11.92 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.20 Total: -67.11 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.07 Total: -36.19 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.04 Total: 47.58 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.15 Total: -2.97 kcal Total: -67.66 5.05 -62.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.978 kcal (2) G-P(sol) polarization free energy of solvation -67.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds