Wall clock time and date at job start Tue Mar 31 2020 15:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47694 * 270.00893 * 3 2 1 5 5 H 1.48501 * 109.47149 * 30.00866 * 3 2 1 6 6 H 1.48506 * 109.47172 * 150.00414 * 3 2 1 7 7 C 1.37867 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00159 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00152 * 288.97613 * 10 9 7 12 12 C 1.52992 * 109.47535 * 265.27729 * 11 10 9 13 13 C 1.53005 * 117.50336 * 245.98830 * 12 11 10 14 14 C 1.53000 * 117.50249 * 177.32758 * 12 11 10 15 15 C 1.34778 * 119.99766 * 108.97929 * 10 9 7 16 16 O 1.21558 * 119.99867 * 178.57854 * 15 10 9 17 17 C 1.47772 * 120.00025 * 358.85749 * 15 10 9 18 18 C 1.39619 * 120.14795 * 327.84404 * 17 15 10 19 19 C 1.38012 * 119.85051 * 179.74703 * 18 17 15 20 20 Cl 1.73600 * 119.92278 * 180.25337 * 19 18 17 21 21 C 1.38527 * 120.15481 * 0.51147 * 19 18 17 22 22 C 1.38251 * 120.30398 * 359.76181 * 21 19 18 23 23 C 1.38153 * 120.14390 * 359.97438 * 22 21 19 24 24 Cl 1.73602 * 120.07872 * 179.97438 * 23 22 21 25 25 H 0.96999 * 120.00713 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47058 * 60.00468 * 9 7 2 27 27 H 1.08996 * 109.47014 * 300.00157 * 9 7 2 28 28 H 1.09000 * 109.46925 * 25.28020 * 11 10 9 29 29 H 1.08999 * 109.46740 * 145.27466 * 11 10 9 30 30 H 1.09001 * 115.55004 * 31.65691 * 12 11 10 31 31 H 1.09009 * 117.49174 * 0.02562 * 13 12 11 32 32 H 1.08991 * 117.50432 * 145.01373 * 13 12 11 33 33 H 1.09005 * 117.50148 * 214.98092 * 14 12 11 34 34 H 1.09002 * 117.49886 * 359.97438 * 14 12 11 35 35 H 1.08007 * 120.07168 * 359.97438 * 18 17 15 36 36 H 1.08007 * 119.84580 * 179.74751 * 21 19 18 37 37 H 1.08002 * 119.92506 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0467 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.9928 -3.9012 -1.2003 12 6 2.2867 -4.9759 -2.0293 13 6 2.9825 -6.3314 -2.1686 14 6 2.9255 -5.3737 -3.3614 15 6 2.3526 -4.3714 1.1033 16 8 3.1236 -5.3112 1.0949 17 6 1.5746 -4.0648 2.3216 18 6 1.2344 -2.7446 2.6225 19 6 0.5031 -2.4657 3.7593 20 17 0.0734 -0.8254 4.1318 21 6 0.1157 -3.4909 4.6065 22 6 0.4540 -4.7999 4.3176 23 6 1.1810 -5.0938 3.1803 24 17 1.6054 -6.7381 2.8196 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 3.0959 -2.9933 -1.7945 29 1 3.9803 -4.2582 -0.9080 30 1 1.1981 -4.9723 -1.9743 31 1 3.9432 -6.4576 -1.6692 32 1 2.3517 -7.2195 -2.2057 33 1 2.2571 -5.6322 -4.1828 34 1 3.8486 -4.8695 -3.6475 35 1 1.5397 -1.9437 1.9653 36 1 -0.4530 -3.2666 5.4969 37 1 0.1491 -5.5945 4.9826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103438417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:56 Heat of formation + Delta-G solvation = 19.557374 kcal Electronic energy + Delta-G solvation = -23586.938660 eV Core-core repulsion = 19996.562476 eV Total energy + Delta-G solvation = -3590.376185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03563 -38.24643 -36.80229 -36.34851 -35.80702 -34.95119 -32.60169 -31.29410 -30.17558 -27.82227 -26.56341 -23.64282 -22.67438 -22.41205 -22.01669 -20.50216 -19.11276 -16.93268 -16.70382 -16.49808 -15.95815 -15.37577 -14.99356 -14.55943 -14.42110 -14.36019 -13.78197 -13.61772 -13.11365 -13.03309 -12.45526 -12.19861 -12.06486 -11.98343 -11.68323 -11.31208 -11.21460 -11.10448 -10.99676 -10.80703 -10.63312 -10.57872 -10.41440 -10.22981 -10.10165 -9.78473 -9.55839 -9.09498 -8.85696 -8.53228 -8.26596 -7.77921 -6.29788 -4.39789 0.97494 1.32629 2.29453 2.52605 3.17128 3.22008 3.25757 3.28901 3.67313 3.98006 4.19704 4.25360 4.86245 4.94268 5.05073 5.12790 5.24082 5.30498 5.38333 5.44944 5.58099 5.80154 5.88962 5.99407 6.05371 6.17395 6.19259 6.26932 6.33703 6.41190 6.45996 6.58862 6.73614 6.89764 7.11943 7.41216 7.62765 7.88403 8.26093 8.66220 8.89196 9.29231 10.75113 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.007220 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.842210 B = 3877.200079 C = 6745.146498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.213 3.787 10 N -0.583 5.583 11 C 0.155 3.845 12 C -0.158 4.158 13 C -0.171 4.171 14 C -0.181 4.181 15 C 0.553 3.447 16 O -0.541 6.541 17 C -0.114 4.114 18 C -0.061 4.061 19 C -0.047 4.047 20 Cl -0.058 7.058 21 C -0.085 4.085 22 C -0.126 4.126 23 C 0.010 3.990 24 Cl -0.046 7.046 25 H 0.268 0.732 26 H 0.033 0.967 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.202 0.798 36 H 0.139 0.861 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 -7.016 4.505 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.084 0.916 9 C 0.094 3.906 10 N -0.312 5.312 11 C 0.032 3.968 12 C -0.178 4.178 13 C -0.208 4.208 14 C -0.219 4.219 15 C 0.340 3.660 16 O -0.420 6.420 17 C -0.118 4.118 18 C -0.079 4.079 19 C -0.074 4.074 20 Cl -0.029 7.029 21 C -0.104 4.104 22 C -0.145 4.145 23 C -0.018 4.018 24 Cl -0.017 7.017 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.218 0.782 36 H 0.156 0.844 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.029 -7.363 4.471 8.614 hybrid contribution 0.126 1.066 -0.037 1.074 sum 0.155 -6.297 4.434 7.703 Atomic orbital electron populations 1.69910 1.05899 1.27669 1.47474 1.24920 0.94834 0.99202 0.94129 0.86584 0.80131 0.83006 0.78464 1.20363 1.20846 1.19507 1.21391 0.93872 0.90138 1.53430 0.91639 1.20145 0.88125 0.82768 0.99587 1.48038 1.41040 1.31257 1.10910 1.20842 0.93491 0.97127 0.85323 1.22733 0.99567 0.96969 0.98505 1.22928 1.02593 0.93606 1.01641 1.22912 1.02826 1.04461 0.91699 1.17947 0.82613 0.82514 0.82927 1.90737 1.38133 1.29265 1.83861 1.19845 1.02363 0.92460 0.97133 1.22822 0.92446 0.98081 0.94591 1.20902 1.02664 0.86606 0.97181 1.98380 1.91827 1.18644 1.94005 1.21107 0.99101 0.91024 0.99160 1.20798 1.00352 0.96722 0.96627 1.21021 0.98811 0.86412 0.95555 1.98380 1.91883 1.16973 1.94463 0.92196 0.94933 0.92347 0.89250 0.91071 0.88058 0.88714 0.89676 0.89271 0.88961 0.78159 0.84356 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.27 13.29 55.43 0.74 -21.54 16 2 C 0.08 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.55 -13.24 7.16 -34.44 -0.25 -13.49 16 8 H 0.07 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.21 4.81 4.68 -5.19 -0.02 4.79 16 10 N -0.58 -12.01 2.53 -176.21 -0.45 -12.46 16 11 C 0.16 2.85 5.53 -4.05 -0.02 2.83 16 12 C -0.16 -2.61 5.98 -90.62 -0.54 -3.15 16 13 C -0.17 -2.53 10.18 -26.69 -0.27 -2.80 16 14 C -0.18 -2.46 10.25 -26.69 -0.27 -2.73 16 15 C 0.55 11.50 7.19 -12.36 -0.09 11.41 16 16 O -0.54 -11.73 14.52 5.31 0.08 -11.65 16 17 C -0.11 -2.20 5.44 -104.94 -0.57 -2.77 16 18 C -0.06 -1.19 7.14 -39.15 -0.28 -1.47 16 19 C -0.05 -0.79 6.31 -39.56 -0.25 -1.04 16 20 Cl -0.06 -0.97 28.95 -51.86 -1.50 -2.47 16 21 C -0.08 -1.18 9.82 -39.47 -0.39 -1.57 16 22 C -0.13 -1.76 9.82 -39.61 -0.39 -2.15 16 23 C 0.01 0.17 6.34 -39.07 -0.25 -0.08 16 24 Cl -0.05 -0.76 26.55 -51.86 -1.38 -2.14 16 25 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.36 4.04 -51.93 -0.21 1.15 16 28 H 0.09 1.65 7.74 -51.93 -0.40 1.25 16 29 H 0.07 1.31 7.33 -51.93 -0.38 0.93 16 30 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.09 1.45 8.04 -51.92 -0.42 1.03 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.20 4.42 4.04 -52.48 -0.21 4.21 16 36 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -25.83 342.14 -10.19 -36.02 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.13 Total: 5.07 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.69 Total: -10.48 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.29 Total: -34.00 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -2.88 Total: -4.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -25.83 -10.19 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.576 kcal (2) G-P(sol) polarization free energy of solvation -25.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds