Wall clock time and date at job start Tue Mar 31 2020 15:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47694 * 270.00893 * 3 2 1 5 5 H 1.48501 * 109.47149 * 30.00866 * 3 2 1 6 6 H 1.48506 * 109.47172 * 150.00414 * 3 2 1 7 7 C 1.37867 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00159 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00152 * 288.97613 * 10 9 7 12 12 C 1.52992 * 109.47535 * 265.27729 * 11 10 9 13 13 C 1.53005 * 117.50336 * 245.98830 * 12 11 10 14 14 C 1.53000 * 117.50249 * 177.32758 * 12 11 10 15 15 C 1.34778 * 119.99766 * 108.97929 * 10 9 7 16 16 O 1.21558 * 119.99867 * 178.57854 * 15 10 9 17 17 C 1.47772 * 120.00025 * 358.85749 * 15 10 9 18 18 C 1.39619 * 120.14795 * 327.84404 * 17 15 10 19 19 C 1.38012 * 119.85051 * 179.74703 * 18 17 15 20 20 Cl 1.73600 * 119.92278 * 180.25337 * 19 18 17 21 21 C 1.38527 * 120.15481 * 0.51147 * 19 18 17 22 22 C 1.38251 * 120.30398 * 359.76181 * 21 19 18 23 23 C 1.38153 * 120.14390 * 359.97438 * 22 21 19 24 24 Cl 1.73602 * 120.07872 * 179.97438 * 23 22 21 25 25 H 0.96999 * 120.00713 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47058 * 60.00468 * 9 7 2 27 27 H 1.08996 * 109.47014 * 300.00157 * 9 7 2 28 28 H 1.09000 * 109.46925 * 25.28020 * 11 10 9 29 29 H 1.08999 * 109.46740 * 145.27466 * 11 10 9 30 30 H 1.09001 * 115.55004 * 31.65691 * 12 11 10 31 31 H 1.09009 * 117.49174 * 0.02562 * 13 12 11 32 32 H 1.08991 * 117.50432 * 145.01373 * 13 12 11 33 33 H 1.09005 * 117.50148 * 214.98092 * 14 12 11 34 34 H 1.09002 * 117.49886 * 359.97438 * 14 12 11 35 35 H 1.08007 * 120.07168 * 359.97438 * 18 17 15 36 36 H 1.08007 * 119.84580 * 179.74751 * 21 19 18 37 37 H 1.08002 * 119.92506 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0467 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.9928 -3.9012 -1.2003 12 6 2.2867 -4.9759 -2.0293 13 6 2.9825 -6.3314 -2.1686 14 6 2.9255 -5.3737 -3.3614 15 6 2.3526 -4.3714 1.1033 16 8 3.1236 -5.3112 1.0949 17 6 1.5746 -4.0648 2.3216 18 6 1.2344 -2.7446 2.6225 19 6 0.5031 -2.4657 3.7593 20 17 0.0734 -0.8254 4.1318 21 6 0.1157 -3.4909 4.6065 22 6 0.4540 -4.7999 4.3176 23 6 1.1810 -5.0938 3.1803 24 17 1.6054 -6.7381 2.8196 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 3.0959 -2.9933 -1.7945 29 1 3.9803 -4.2582 -0.9080 30 1 1.1981 -4.9723 -1.9743 31 1 3.9432 -6.4576 -1.6692 32 1 2.3517 -7.2195 -2.2057 33 1 2.2571 -5.6322 -4.1828 34 1 3.8486 -4.8695 -3.6475 35 1 1.5397 -1.9437 1.9653 36 1 -0.4530 -3.2666 5.4969 37 1 0.1491 -5.5945 4.9826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103438417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:55 Heat of formation + Delta-G solvation = 9.120193 kcal Electronic energy + Delta-G solvation = -23587.391250 eV Core-core repulsion = 19996.562476 eV Total energy + Delta-G solvation = -3590.828775 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51999 -39.63212 -38.15151 -37.65813 -37.14969 -36.57285 -34.43686 -32.63270 -31.49626 -29.56183 -28.08974 -25.26362 -24.24207 -23.73435 -23.17118 -21.85624 -20.60193 -18.59430 -18.35932 -17.94284 -17.40520 -16.77294 -16.51196 -16.14785 -15.89194 -15.73306 -15.14475 -14.97541 -14.61444 -14.46698 -14.22094 -13.68042 -13.39517 -13.29454 -13.15647 -12.88385 -12.79689 -12.56240 -12.34488 -12.30217 -12.19974 -11.95660 -11.90485 -11.76276 -11.66120 -11.28022 -10.85922 -10.68763 -10.58072 -10.01462 -9.61547 -9.43886 -8.19631 -6.34491 -0.35669 0.01933 0.98582 1.21218 1.41028 1.45155 1.52254 1.77035 2.16628 2.40071 2.57193 2.96281 3.09794 3.49908 3.75009 3.86332 4.01585 4.04433 4.13204 4.15616 4.28368 4.41689 4.68305 4.74222 4.78173 4.84667 4.87321 4.91582 5.00638 5.02420 5.18317 5.23600 5.27981 5.29209 5.51605 5.67491 5.76562 6.01637 6.55659 6.78442 7.23502 7.38580 8.84681 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.007220 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.842210 B = 3877.200079 C = 6745.146498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.230 3.770 10 N -0.587 5.587 11 C 0.156 3.844 12 C -0.182 4.182 13 C -0.167 4.167 14 C -0.155 4.155 15 C 0.548 3.452 16 O -0.556 6.556 17 C -0.138 4.138 18 C -0.081 4.081 19 C -0.055 4.055 20 Cl -0.060 7.060 21 C -0.065 4.065 22 C -0.107 4.107 23 C 0.001 3.999 24 Cl -0.044 7.044 25 H 0.269 0.731 26 H 0.008 0.992 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -7.774 5.634 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.074 0.926 9 C 0.110 3.890 10 N -0.316 5.316 11 C 0.033 3.967 12 C -0.201 4.201 13 C -0.204 4.204 14 C -0.192 4.192 15 C 0.336 3.664 16 O -0.436 6.436 17 C -0.143 4.143 18 C -0.100 4.100 19 C -0.082 4.082 20 Cl -0.031 7.031 21 C -0.083 4.083 22 C -0.125 4.125 23 C -0.027 4.027 24 Cl -0.015 7.015 25 H 0.078 0.922 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.189 0.811 36 H 0.197 0.803 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.300 -8.125 5.589 9.866 hybrid contribution 0.228 1.244 -0.328 1.307 sum -0.072 -6.880 5.261 8.661 Atomic orbital electron populations 1.69985 1.06826 1.28178 1.48424 1.25443 0.95386 1.01450 0.93907 0.85818 0.79052 0.80114 0.78422 1.20029 1.20585 1.19551 1.21455 0.93386 0.91006 1.53097 0.92604 1.19811 0.88051 0.82976 0.98180 1.48060 1.40881 1.30862 1.11845 1.20880 0.93390 0.97543 0.84864 1.22569 0.98704 0.97744 1.01129 1.22934 1.02036 0.93137 1.02244 1.23027 1.02983 1.02360 0.90863 1.18266 0.82558 0.82173 0.83383 1.90704 1.38845 1.29825 1.84269 1.19790 1.03826 0.93268 0.97368 1.22459 0.94385 0.97407 0.95716 1.21051 1.02665 0.87316 0.97165 1.98376 1.91767 1.19110 1.93874 1.21544 0.97554 0.89966 0.99281 1.21273 0.97963 0.97788 0.95477 1.21245 0.99244 0.86020 0.96150 1.98379 1.91964 1.16565 1.94602 0.92183 0.97384 0.92625 0.90007 0.91383 0.89522 0.89329 0.88733 0.87346 0.87751 0.81100 0.80255 0.80013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.58 13.29 21.44 0.28 -46.29 16 2 C 0.04 2.08 5.46 84.65 0.46 2.54 16 3 Si 0.94 40.32 29.54 68.60 2.03 42.35 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -27.41 7.16 25.60 0.18 -27.22 16 8 H 0.06 2.83 7.81 -2.91 -0.02 2.80 16 9 C 0.23 10.85 4.68 85.63 0.40 11.25 16 10 N -0.59 -25.19 2.53 -829.67 -2.10 -27.29 16 11 C 0.16 5.93 5.53 86.38 0.48 6.41 16 12 C -0.18 -6.07 5.98 -10.79 -0.06 -6.13 16 13 C -0.17 -4.81 10.18 30.62 0.31 -4.50 16 14 C -0.15 -3.98 10.25 30.62 0.31 -3.66 16 15 C 0.55 23.37 7.19 86.76 0.62 24.00 16 16 O -0.56 -24.49 14.52 -3.90 -0.06 -24.55 16 17 C -0.14 -5.39 5.44 -20.07 -0.11 -5.50 16 18 C -0.08 -3.19 7.14 22.55 0.16 -3.03 16 19 C -0.06 -1.81 6.31 22.28 0.14 -1.67 16 20 Cl -0.06 -1.98 28.95 -2.72 -0.08 -2.06 16 21 C -0.06 -1.59 9.82 22.34 0.22 -1.37 16 22 C -0.11 -2.60 9.82 22.25 0.22 -2.38 16 23 C 0.00 0.05 6.34 22.60 0.14 0.19 16 24 Cl -0.04 -1.40 26.55 -2.72 -0.07 -1.48 16 25 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 2.71 4.04 -2.39 -0.01 2.70 16 28 H 0.08 3.15 7.74 -2.39 -0.02 3.13 16 29 H 0.07 2.58 7.33 -2.39 -0.02 2.57 16 30 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.09 2.67 8.04 -2.38 -0.02 2.65 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.17 7.82 4.04 -2.91 -0.01 7.81 16 36 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 37 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -56.89 342.14 4.59 -52.30 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.11 Total: 18.09 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.48 Total: -11.08 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.82 Total: -73.58 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.06 Total: -24.55 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 17 Polarization: -3.38 SS G_CDS: -0.15 Total: -3.53 kcal Total: -56.89 4.59 -52.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.420 kcal (2) G-P(sol) polarization free energy of solvation -56.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds